XLOC_000035 (gene) - C. hemisphaerica

Overview
NameXLOC_000035
Unique NameXLOC_000035
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000001:1521423..1530269+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000035 ID=XLOC_000035|Name=XLOC_000035|organism=Clytia hemisphaerica|type=gene|length=8847bp|location=Sequence derived from alignment at sc0000001:1521423..1530269+ (Clytia hemisphaerica)
CTTGTGTCAAATTTCAAGATGGAAATTACCAAGTTTAGCGTTTTATGGAC
AGAGGTTAGTAAGAAAAATGGGTCTTATACTTTTCCTCCAAAAATTATCA
CATTATAGGATttgttcatttaaaaaatttaccgGTCGGGGATACGTCCG
TCGGGGAAACGTCCGGTCACCAATATTCGAATACTAACAGTTTGTCACTT
TCTAACGAGGATGAACTGTAATATTGAGCTAGTTTCTCGAAGGGAAATCA
CGAAGCCCAAGTACACATTTTTGCCATGTTCTTAAgatattcttaaaatt
tcgtCGACTTCCAGCCATGTTCTCATAAActtggttctaataaaaaagaa
cGTGTAGTATAGTACAGGCTAGATCAGTTCTTTTCGTTGGAAAGATTATC
TCAGATGATGGATAGTAAAATCTTGaattgaagaaaatattatcacccct
tctcacagaccgactgggaccccttcctactggaaaaactggacaaaata
tcgttcccagtggaaaattattctCCATTTTCGTCcatattgaaaataat
cagaaaagcAAATCCTCACTAAAAAGTattgttctattttttttatcccc
actggattttctggctcgaaagctgtgaaaaaacatgggaatatcaatcc
ccatcccAATTTTACCGGGACTTTGAAAAAGGGGGTGTATATTAGGGAGA
TAAACTTTGAAATCTAACACTCTAATGGGTAAGTAAAGATTAGGCTTGAT
AATGGATAGCGGAggatttcttaaaaatattttgaaagtacaATTTCTTT
CTGACTTTGAACGAACGATAATGACTATGAAAATCGATCAATTATTGAGT
GACTGTGCTAATAGTAATGATGTTTATATTTCAAAGTTAGtgaaaaatca
gtgattttttgaaagttcataGGGCAGATAGATGGATAGATTCATTATGT
TAGACTTGGTTGGAAATTCATTTCTATCGTGTGGCCTTTGAAGCCAAACA
ATCAACATCGCGGTCGAGACAGGGCCCCTATAATTCGCGTTTTCCCCGTT
TTTCGATACATTGTAAGGTATTGCACTGTGAGAGTTTTCATAGAAAGAAT
GTTTATAGAGGAAAGAAAAATGTATGAGATATAGAAGAAGAGAATAGTGG
AATGGCAGAAAATATAAGATAATTAGGAGGGggtataaagtaaaaaaaat
atagAGGGAAAAGAAAATTGGGTTGAATATATATCTTCTATGGTGgcgat
gaaaaagaaaagattttttgtgtGAATGAACATAAAcagattatttttgt
tttatgtttgttgatcttaaacaaaaagtttgatactgaGCCCTTTTTAA
AAGTTCGcgatttttactgatttttagtgagagaaaatgaagaaaaatgg
aCGTCATTTGCTACCAatcatcttctttttcaattctttcattttctcat
CTTGATTTAGGGGATAAGAATTAAGTAAAAAATTATCAGGAATGAATGAA
ACGACTattttagtttgttttgtttggttttttaatgtttttctttttgg
tgtTCTTTAAATAGGTTGCTAATTTTTATCCTTTAATACTATTTTAGATC
TgatttagtttcatgttttttgtttacatgaTGAAGGGGGTTGGTACAGA
GGTTTGACTTAAATTATCTTTTTCTAATGAAcatttaaaatgttaaaaat
ttgttAGTTAAgttttctttatatttctttttgacTAATTTATTCACAAA
TTGATTCACGCACATAGTtcaactttattttttaatatggtCTGTTtagt
acatgtttttctttcgaATCTAACAGTCATCATGTTGTTTTGATTATACA
TAGTAGACTTGTGGTAGACATGATAAATACAGCTACGTgctctcattttg
aaaatatgaaattttaaatttccttGATTCACAACGCTGAAACATCttga
atattttgttttgaatgattGTTGAGAGTGTCACCAgcatgaattttttg
tttgggAATGAAGTAAGTTTGATCATTTTAAAAGAATGCAATCTAAGAct
caaagattcttttttttataagaacaatgttttaagaacaacgaggctgg
aaaatataagaacaatttaagaataatgctgACCCTGTGGAACTGCCGAG
TTTCAAGAAATTCAaagatgttctttttttttaagatatctCAATCTTGC
TCCTAAAATATAGGAACAgtataagaacaatctgaggATTAGAGGTTCAA
AAATAAGAATGGTCGGTCCTTAAGAAAAGTTAAGACTACAAttcactggt
tcttataaaaaaaggagtATACGGCATTAAAGTTAAACCCGTAGCCGACT
AAGATTTCGACAgacctgtctcacagccccggtggaactctTTTTCTTAA
TGggaataaaaattctattgttccaaggttaaaaaatccagtggggatgg
ttttggagtgcaatttttaaacattgaatttcgagtggggatgaaatcaa
agtcaattttccaatggggctaaaattccagggtattttccaacCGCGCT
acattttccagtggggctggggttccAGCGGGTTTGTAACACAGGGGTGC
ATTTTGTCAAAACGAAAAAGTTAGAGGGTTTGATCAGACGAAAAGCTGAG
GCGTCAAAGAAGAAATGGACCAACTATGAAAAGCGGTTTCCGTGATGGCG
TGATAAGGAACTTTTTCTTGCGTAATAACgtgttttgcaaattttttatt
ccaTCTTTGAGTGATCAGAGGTCAAAGCGTGATTGTGAttggaaagattt
ttgagccgtgatgcgtGATCTGGACTTTCTCAAAAGGAATGCGTgattat
ccaaattttttatttattttcgtgatcgtgattgaagacaaaaaatagCG
CAACATTGTGATAAATCATAcattcaatttttgaagtttAAATCTATCCT
CTACTTTGAAATGACATGTATATGTGTTCATTGTACTGGGCTAAGTTACG
TTAATAATACTCCGGTATAGATAATATTTTGATATCCCGCACTGGCATTG
TTTGCACTCGTGGGTCTGTAAGAGAATTTGGCCAGGTTTGCTATTCAGAT
TCGGAACGAATTAACCCAGTCGCTTTCGAGCATGAGGCAAGgaggttttg
aatgttttgactAAACAACCAGTAAGATCGTCACATTCGCCATATCCTAT
TAGCAAAGCGTGGTAttcgcagaatggatgatctgttacacgttttttta
taccaacaaactatataagaacataaggcttcgacggccaaaattttcag
aatatttttaaggctttatggactcaaaaacactcgatttcttaggaaaa
tgggtaaaaatggtcaaaaatttgttaaaataagaacatgctaaggaCAT
CTCTTAGTGAAGAGTATGAGATGACAGACTTTTGAAAGATGAGGAAGAGA
GAAGAAACCACATATGATTCTAGACACGCGGTAGGGGGCGAAGCAAAGCA
GCTACCTCCATTTAATCGTGATTCGAATTAAAATAACTGAGATAAATCGA
AATTAATTTGCCATTCAAAAGGGTAGGGTTTCATTTTTCATAGATTCCAA
TTGAAATCTATGACGACTGCATAATGAATTGAATATGTCAAAATGAATTC
GATAGCCAGGGGAGGTGCTATTGTTTCgactgttcttttttgtttcctGT
CTGTGATTTGATGTATCGAAAATCATTTCCGTGTAAAGTTAACGTGACAT
GTGgggaagttgaatttttctGAGTCAGTTTATTTTCTGAGTCAGTTTAT
TTTCTGGTGTAAAAAATATTGAACCGTTGAACAGATTTAGTGTTGATACT
ACTAGAATTCCAAAATGACTCCACAGTCAACAGATGATGAGGTAGGATTT
ATCAACATTCTCCAATATACCGTGTGCATCAAGAAAAAGTTGATTCTTTT
TTATTCTATATAGGAAAActcaacttaaattttggtatatgaAGCTTCAG
TTCAGTCAATCAAAACCTAtgtttaaaaacctgaaaattttgaCCTACCT
AAAATGACAAAATCACACTTGCgtatgtttcttttctcttctaACTCCAC
ACTTAACAAATTATAAGGTGGGATTCAATAACATTCTCCAATATACAAGC
AAACTTTCTTCCTTGAGTAAATTATTCACTGtatgtttcttttgtttctc
ttttctaaaactttttaaaactgCAATCTACAGTACTAACggtacccggg
gggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaattttttcaaa
atctgtcgTTGCTATACATGAGGATATTTATAAGATTTTTCAGGAAAGTT
GTGAACGATTGCCGCGTTTACgcttgtatttttttaaattaaaatgccgt
ttgaagaaactttttgttaatttaatgCAGGCTGTGTACTGTATTAAACA
TTTTCACTTACACACCTCAAAAGCAAGCTCAgtaatatgcttgtaatatg
cttattttttagacaaattcaggTCTTGGTATgcttatgcttataaaaaa
aacatgtagtctaGATATTTTGCCCAAatatgctagaattttgaccattt
tttgctcaaaaaggattgaaaattTGGGAGGAAATGTACTCTAAGGGAAC
GGTACTCTTTACCAGAGCAGAGTGTCTATATCTTACGTACTGTGTGACTT
AGTATAGCCTTTCACTATCCCAACACATGATTTCTCTAGCACTCTGTGGG
ACAGGGTtgaggaaaaagccgtggtcgttTGCCGCAGTGGTAGTTACAGA
GCCAAAGCCGATCGAGCACCAAATAACGCCCCACGCAGCGAAGCCCATAG
TGATAAAGAGGCGGTGCAACAACAAGACAGTTAAGTCTGTGTGTGGATAA
GCCTGGTGTTATGTAGTGCGTTAATGAATTATGAATGAAATTCCGTATGT
ATCGGGTCTGGCATTATACATTCAGATATTGGGTACATCTACCTTGAAAT
AACACAAAACCAAGCTGGCGAATAACTCACAAAATTCGGTCAATTCGGTT
CGTCTCTCGAAGTATtcggaaattttcattttcagtggataCCTATGTTT
TCATTTAAGTACGGTACATCTGCTGGAACAAAGTAGTTTTGCCGTTTTTA
ACAAGCCAatgcaaaattttataaaatttgaaatttttcttcaagcCTGT
GCTTATCATATTTGCATGACAACTTTAACACCTTGAGTGAAAAGGCTCTG
TTGGACAGATTCTATTATGAATAAAATCAACATCTTAAGTGTGAAATGGG
TAAATATTAAGTTCAGTGAATTTCCAAATACTGTATATAAGCGAGCCTCA
AAGAAAAGCTGCAAACTTAAATTACCATCTGCAATGCTTGAAACTTTTCC
AGACAGTAGGGTTTAGAAAGTGAGAGAGCTTTTAACTTATTCCTGTCaag
actatatatatatatatacggGATTGACGGCATATTTAAGAACGTCATAA
tacagtctccataactcgaacacgttcgggaacacaaatttgttcgagtt
aaagagatttcgagatatggagtaaggtttacaTGGCATAACTgcggacg
agaaaacttgttcgagttaaggagatattcgagttaaagaggttcgagtt
aaagagactctactgtaattCTAAGCAGGGAACTCTCAGCAGGCACACAa
cgctgtttcaacgttcatctaacgttatatggacgttgtgaacgttagat
aaacgttgaaacaacgttgtatgccagCTGGGTAGTTATTGATGATAAGT
GTAGCCAAGTCTGAGAAGAAAACGTTTCAAATTCTTCATTTTATAAATTG
ATAGGTTGACAGAAATAGAGCAGCACAGCGGCCTTCGCTCAGCATGTTCA
TAGCAAACGATACAAGTACACCTTCTACACACGTCCGAAGAAGAGGCTCT
GTACAAAGTATAAATTCGGACACTGACTCACGTGGCGTGTATGATCAAAA
ACAATACAAACGACGACGTAGAAGAACCTGGGAACGAGGTGAAACGGAAA
ACTCGTTGAAACGAAACCCGAATAATGCACCGAGGATTCGGATCAATGTT
CGGGGACGGAAATATGAAACGTACATAGGTAAGATAGttgaatttccatt
tttcattgaaaactgaaaaacctCCAGTGTCACATCACGATTTGAATTAT
TTCAAACTCCTACAGGGTCAATGAATGGATAGACATTATTTGAGGCTAGA
AAAGCGTTGCTTCCAGCTCAAAGATTATCCAGAGGTCAGAAAGTTGGTAC
ggattttttttgtaagaagcctttgttcttttaacttttttagttttaag
cctaaagatgtttttattttcaccactttgtgggtatttctttccatttt
cctaagaaatcgggtgttttagagtccgcaaagccttgaaatgttcttgc
cttgttcttaaaatgttggCCATCGAaacattatgttcttatattctTTG
CAAAAAACATGTATCAATTAGATAGTGAGAAGGCNGTTCTTAAAATGTTG
GCCATCGAaacattatgttcttatattctTTGCAAAAAACATGTAAATTA
GATAGTGAGAAAGGTACTTTCAAATAAGTTTCCATAATATTAAACAAATT
CtccattttctttttattagacACACTTGACCGTTTTCCAGACACGTTAC
TAGGCAACAAAGAACTTCGTAACCAATATTACAATGAACGTAAAGAAGAA
ATTGTCTTGGGTAGAAATTATGAAGTCTTCGAAGCCGTGCTCTTCTATTA
ccaatcaaatgggatcttggGTAAGTTTTTAAGAAGACAAAACTCTCAca
acaagttttcaaaaaatcttggcGGAAATTACAATAAATCTTTTGTCCCA
TGGATCTTTGACCAAAGCCTTACCCTTACAAGCAAAACGGAAATCGTACA
AACAAGTTACGCAACTATACGATAAAGTCGTTCTTTCTAATAATATTGAT
TTAATCAAGATAATCAGGAATTTTATACACCATTAGCATcagcatcccct
atatcaaaacatatcagagggaaTGCGTGCAGCCTAATAGAATTTTAAAC
ATTATTCCATTCCAGCAAGACCAGCTTGGGTTAgcgaaaaagattttgaa
aaagaactaaaGTTTTATCAACTGCAACCATCCGAATCTGAAAAActgag
aaaagaaaaagaagctcAGAAACAAGCGGCTAAAACGTTAGCATCAGAGC
GCCGCCCTGCTTATCAGAAACTCATATGGAACCTTATGGAACACCCTCGT
TCATCAACGCCCGCCTTCACATGCGCCATTCTCAGTATCTTTACAATCAT
CATTTCAGTCGTTGTAATCTGTCTTGAAACGATGTCCTCGATCACAGACG
ATCCTGATAAAAAACGAGGCTACATTAATcgcaaagttttattttatctt
gAAACGACAGTCATGATATGGTTTACTATGGAGTATTTATTGAGAATCAT
TTCAGCTCCCAGAACGTTCAAATTCATATTATCACCTACAGGAATAATAG
ATTTGGTTGTTATATTACCTTATTACATCAATATTATAATCGGTGAAGAA
ATCCGTTCGTTTAATTTAGCGGTATTCCGTATAGTGCGAATGTTTCGCGT
TTTCAGGATTTTCAAATTAACTCGATACAGTACCGGATTGAAAGTGCTGG
GTCGTACTATTCTTGAAAGTTTTGGACAACTTGTTGCTCTCTTTCTCTGC
TTATTTTTGTCAGCGATTCTATTctccagttgtttattttttatcgaACA
CGATAGCTTGGACCATAATTCCGAAGTGTTTATTAGTATTCCGGACACTT
TTTGGTACGTCATCATTACTATGACTTCGGTTGGTTACGGAGACGTCGTT
CCGCGAACGTTAATTGGACGTGTAGTTGCTGCCTTTTGCATGGTAACAGG
AATTATAGTTTTGTTATGTTTACCAACACCCGTCTTTGTGACGCATTTCG
GACGATTTTATGAAGACGTCATCAGTAGGCCGGCCACTGAACAAGAAGAG
GATGATGAATTGACCGACTCTGAGATTTGGCGTAATGGTGAACACAATCT
TATGATCCCAAGGTGGGTCAATGATGATGCGTGGAAGGAGAAAATTAGGA
CTGATGTTAATCAGAATCTGACGTTACCAGGGTTAAATGTTTACTTGAGT
ACGTCTAATCTGTTTTTATCCAGAGCTTGCAGTCAAGAAGTGTTGCATAG
TATTCATAACTCACCAAGTAAGTAGAATctggtaattttgaaaaatgttt
tttttgtaaaaattatatactttttgggttttaccaaagaaataaag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000069TCONS_00000069Clytia hemisphaericatranscript
TCONS_00000070TCONS_00000070Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000069-proteinTCONS_00000069-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1521423..1530269 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42	1.2	0.29	0.26	2.8	2.22	3.43	3.73	2.03	3.5	2.8	2.42	2.83	2.99	3.73	4.97	2.66	2.71	4.57	3.57	1.99	2.24	2.93	3.38	2.28	4.08	0.42	0.92	1.31	1.16