XLOC_000048 (gene) - C. hemisphaerica

Overview
NameXLOC_000048
Unique NameXLOC_000048
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000001:1846916..1852957+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000048 ID=XLOC_000048|Name=XLOC_000048|organism=Clytia hemisphaerica|type=gene|length=6042bp|location=Sequence derived from alignment at sc0000001:1846916..1852957+ (Clytia hemisphaerica)
ctttcagtcgaaaagtaaaagaaacaaacaaaaaagaaaacacaatgAAG
GACATAACATACCATCAATTTAAAGACAAAGAATTATTTTGATATTCTAC
AGGTTTTTTATGTTTGACCctattttataatttattcTTCATACAATTTT
GCCCTTGATGCTTTCTAGGCTCCACTCTTTCCAATTCTAGGGAAATTTTT
GCTATAATATTTGTACATTTCACAAATTTATGCCTCTGAAAGCAGCCAGT
TTGAAAcgcaggtcaacaggtcacaggtcaacagggcACAGGACATAGAC
ACAGGTCATACacacaggtcatacaaactacagaACAGAAAAGTATAACT
TACTTCTAGCATAATTTATAAcatgtttcttaaaatattATATGCAATGT
TGTAAGCTATTTAGAACATTCAAGGACAAATCACTAACCCCAAGTATGTT
TTAGGATCCTTAGTAGGATCCTGGCTGTGTGAGTGGATATAGTTTGGGCt
tcttcagaaaaaaattgaatatgaggGGGTGTggggaggatataacattt
tttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNccccccccccccccaaacattgaattttG
TCTGAAAACACcttgcacctgaaaacctcaaattttgcacctgcACTTGA
CTTTTTCCGATTTGTGCACTCAAGATCTCAAGCAAACGTGCCACATTCTG
CAAACTGGGTTTGCCtctaaaacaaggcaaattttgcagacTTTTCAGTA
CCCCCTTAAAAATGTTCTAGATCAATATACCTCCAGTATGATATTTTTGA
CAATAAgtgttttcaaacattttctttttgctttttttaataattaaagc
tgacctgtgtcaataacctgtgacctgttgacctctTAAAGTTGATTTTC
ACATTCAGAatttcacttcattttattcacacaattttgttttgattttc
atgcATTCACCAAATGATACAAGCTTGTGTGTGTTTTCATGCAAGCTGCT
TTAGGGCCTGAAATAGATTTCAACTATCATATCTCCTAACCAATCCTAAC
ATTATACCTGACATTTGCTTActatttttaaacaaacaaagaaaatttgt
ttcTCTATTCCTGCCACTCAAGCACAAAATGTTTAGAATATCTCTTTTAT
TCTGCTTTTTCAGCATAGAGGTGTGCCTCCTTTGTATATCATATGAAAGA
ATATCTATAATCTAAGATTTCATTTATTTCTAGTTTTAAAAActtgttat
ttttcattataAGAATGGAGAAGACAAATGACAGAATTGAATCTTCCGCT
GATTTTCAAGGGGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGCAGA
CTGTTCCCAGAAAGATTATGATCATTTTGTTGAGCTATGTAAGAAAATGA
CTGATGCAGATTTCCTGtgcaaaattattgaaaagctCCTGAATTGGCTA
CCTGGTAAAAATCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATTACT
TGAAGCGTTATTTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTTATC
CAGCAATGCTGGAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTTTTT
GGGACCAAGTGGCTGTTTCGTCCAGAAATCTTGACAAAATTCATATCCAA
TCGATTTGTTCAAGAACCTTTGACTGTCGAAATCATTTTATGGGGTTTAC
TCAGAAAGGATTGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGATTTT
TGTACATTGTTACGGCATTTTGGCAAGGTTACTATTGAGAATGACAGAGC
TCAAGTTCATCGTTTTTacaaaacaatgatccaatttttaatcaagaatt
aCGATTGGGTATTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATTTCA
GATCACAATGAAGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGA
ATCATTGAAATCTGAACAAATCAAAATACTTGTTCAAAGTGGTATTTCAT
TTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCTACT
GAAGAATCAGAGTACGAAAGTATGTTGAAGtatgtaaaaattattttcaa
ggaTGACTTTTATTATGATATAGCAAAACAGCTGATAGCCCTTGACCAGT
TCAAGTCCAAAGATCACGAGAAGATATACAACACAAATAAAAAGAGCATT
TTGCAAAGACTGATCCATGATTTAAAAAAGGATTTCTATTACAATGAAAT
TTACATTGATCTAGTACGTGTTCAGATTGAAAATCTAAAGCCACTACAAG
ACAAAGGGTGTCCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGT
TATGACGTAGGTATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGT
TGTATCTGATGACTTTGAAAACGACTTGGAAATTGCACATGCGTGGATCA
ATGATCACGCTGGACAATATCTTGAAGATGGTTATAGCTTTTCTGCGGTG
GCAAGGCTATCTACGGAAGGCACAGTTGAAGTTATACTGCAAAAAGAACA
TCATATTTGGGAAAGGAAACGAGNGAAGGCACAGTTGAAGTTATACTGCA
AAAAGAACGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGA
TGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATG
CGTCTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTA
GATGGTCTTCAAATTTCACTTTGAATTACCACTTTTGTCAATAGACTTTA
ATGTATTACTTTAAATTTGACAGAATTGAATTTTAAGACTCATTTATTTG
GCTGACGGCTGACAAAAGTACCATGTTTTTATTAGAAAAAGACTTATTTC
AAGTCCGTAAATAGCAAGAATTTGGAAGATATATATAAAACGAgttaaat
ttggctgaaaaaaaaaaatttgcagtgTGTTTTGGGAAAATCTGccaaat
ttaccaaattttctttctgccaaattttttttcctattGTGAAGTGTAgc
ttattttaaaaaattttctcttcACTTTTCTGCTTGAATGGAGATTTTCC
TAGTGTAACAATTGATATATTCTTGTTTTGAGGGCcttataggggggggg
ggtaccaagATTTGCCAAGAAAATGGGGGATGGAAATGTAGGGGATCata
agaaaggggggggggttggaatatttttaaaaatttttttttttttttcg
agggGCAttataggggggggggtaccaagATTTGCCAAGAAAATGGGGGA
TGGAAATGTAGGGTGTCataagaaaggggggggggttggaaatgtttggt
caattttttattcatatACAAAATGGTCACAATGGGACCATTGTCTCGTT
TTATTGCAAAATTCGAAACATTCTTATATTACCTTATTTCTGTAAAATAA
GGTAATAAAAGACTTCATTACAGAAAGGGGGATGGGTATAaagggggatg
aaataaacctagggggtcATACCCCTACTACAAACTTTTGCACTCTTAGT
CTAAATTTGACCTTAAATTGTTCCTATTAAAGCCAGTATATCTATTCATG
GGTCGGTTTGCTAATTCTGCAAAAACATTCCTTTAGCTTCATTAAATAGA
ATATTGTATTTTAGATATTTTGGAAATGATAAAAATCCAATTATTCGAAC
AAAAGTCAACTTTATCTTTCTCGTTAAATCCACGCTCTCTTGCTTTACTT
ACATAGAAATACTAACATtgattatttgtttttatttttcagcaaaaaat
aaaaaaaacattgagacaaaaacaaaaaagaaattatcatTGTCATAGAg
ggtaaaacttttttttaccaTTCACTAAAATGACAGTTTGTCTACACgtt
ttgttttttggacctacctggaggtcctataaattaacctgtgtttgttc
gtctgttaccaacttttttcTGGATCgaatcataggaattttgcgatttt
tggtatttttaaaggtgcaaaatggtgataaCCAAAAtttgacggagccc
gatttttgaaaaaaaatatttttgttaaaaatctgttctttagtttttcc
taaatttttgtataaagacATAGAATTACAGTGTGCTGAATatgaaaaag
ttcatttttcgaaaaaaaaaatttggcaccaactttcaaaattttaaatt
attcagtTTTTGTTTCTACATTGCCTTCATTAAACtgttattattcgttt
tataaacaggtaggtccataaaagtatcacttgttttttttttcataaga
acatctaaaaattttgaaaccttgggacgttcttaactttttgagttttt
ttaagcctaaaaattgttcttcaccattttttgagttatTTCATAACAAG
AATGGAAAGTCAAACgaaggaaaaaaatcataatgattaTCAAAAAGACT
TTTGGGATGCTGCCCAACAACTTCATATATCTAACTGCTCCAAGGAAGAT
TATGAACGTTTTGTAGACAAATGTAAGACATTGACAGATCCGCAGTTCTT
GTCCGAAATCACCGAATATCTCTTGGGAAGACTTCGATACGTATATGAGG
AAGTTGATTCTACTAAGATGTTAACTTCATTAATGGAAAAGTTGATGAAC
TTATTAAACTCCAAATCTTACAGCAAAATTAAACCTGTGAAAGTCGATTC
TATGTATGCTAGTATTCTATTGCTTTTTGGTGTCGAACACTCAATGTTCA
ATTCAAAGATTCTAACCAAATTCATTCTGGCAAGTTTGATGTCAAAATCA
ATATCAGATGGACGCGTTCTTGGAGCAATGACTTTGGAATTCATTCTATC
AGGGTTTATCAAAAATGCTTGTTTTGATATAGAGGAATGGAAATCTAACG
ATATTTTTTGTACCTTACTGCGCCATTTTGGAAAGgctatttctaaaaat
aaccGATCTCAAATACTTCCTTTTTATAGAATAatcattcattttttcat
caataACCAAGATTGGGTGTTGGTTAAGGACATCTTGCCAACAGTGCTTG
ATATCTCAAATCACAAACAAAACTTTAGTGAATATATTGAACTATTTGAA
GGCTTGGACTCAGTTGATGCAGAGCGTCTCAATGTTCTCGTTCAATGTGG
TGTTCCATTTTTTGCGGAGGTTCTGCATCGTGAGTCCTTGAGCGTTATTG
GATCTACCAGAGATGCAGAATATGAAAGCATGCTGAAATAtgtaaaaatg
attttcaaagaTGATTTTTATTCAGATACAGCTAAAAAACTGATAGAACT
CGATGAAATGAAGACCAAAGATGATAACAAAATGTGCAACGCTGATGGGA
AAAGTATTTTGCAAAGACTGATCATTGATTTAAAAACAGAATTTTATCAT
CATGATTTTTATATTGATCTAGTTCGTGTTCAAATACAAAACCTAAAGCA
TCTACAAGTTAAAGGATGTCCAAAATTTTCATGGGAACAACCGGATGCTA
GATTCAATCGAAACACAAACATTCAAGATTTTCTGCACAGTAACAAAGTA
ACGTTGAAATTAATTGGTAGAAATATCTTTGTTAACAATCTTGAAATCGC
ACACTTTTGGATTAATGATTGGGCGCAACCACATATTGGACTTGGTTTTA
GTTTTACTGCGGTCGCAAGGTTATCAACGGAAGGCACAGTTGAAATTATA
CTgcaaaaagaacgacatatttatGAAAGGAAAAGAGATGGATATTTTAA
GCTGATGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTCTCAAAATA
TGATACATACTGGTACCAAACGAAAGTACAATATCGGAGAGGAAAATAGA
AACTGAATATTCTTACTTGAAAACTCGATTGATCATGGAGACCAAAGCTT
TGGCATTCAATGGTTCGTTGTGTGTCAATTTTGTGCACTCTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000094TCONS_00000094Clytia hemisphaericatranscript
TCONS_00000095TCONS_00000095Clytia hemisphaericatranscript
TCONS_00000096TCONS_00000096Clytia hemisphaericatranscript
TCONS_00000097TCONS_00000097Clytia hemisphaericatranscript
TCONS_00000098TCONS_00000098Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000095-proteinTCONS_00000095-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1846916..1852957 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.47	20.72	13.04	9.61	25.47	15.48	14.62	15.46	8.98	9.72	7.65	6.71	6.73	6.66	8.44	9.02	8.8	10.37	5.68	4.68	10.71	10.74	21.79	22.3	5.73	7.59	7.53	4.3	9.56	11.57