XLOC_000061 (gene) - C. hemisphaerica

Overview
NameXLOC_000061
Unique NameXLOC_000061
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000001:2147059..2156560+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000061 ID=XLOC_000061|Name=XLOC_000061|organism=Clytia hemisphaerica|type=gene|length=9502bp|location=Sequence derived from alignment at sc0000001:2147059..2156560+ (Clytia hemisphaerica)
CCGAAATCAGTTTTACTGGATAAAGTTGTTTACTTGAAACGGAGCAGTAA
CTCGATTCACAAAATGaaggttttgattttaatatttcttggaattttAA
CCCTGGTTCAAAACCAAATGATGGATTTCAAATTTCTGAATCCACTCAAA
GACAAAAAACTGGTCGATGAATCTTTATTTTTATACCAAACTGACAATGT
TCCTCAACAGAAATGTGTCATCGATTGTGCCGCATCTCCGAAATGTGGGT
CTGTAAATCACCATGATAAAACGCAGACCTGTATTTTGAATCGGGAGCCT
AATTCAAATGGAGAAGACGTTAAAGACTTTTTAACAAATGCAGAAGGATG
GATTTTCTTCCAGAAAACAAAAACCAAGGTATGttacaatagacgatatc
ggcttaacgtgNattttatttatttgttataaTTTGTTTTATACAAATTT
CGATTTATTATTGAGTGATATTTCTAAGTTTGTCATTATGCATTgttcaa
tagacgatatcggctttacattaaaactcagatttgacccccgagaattg
cccacaatgctttgtatGGAAAGAATTTCATCGTGAactttttccgcgca
aagcattgtgggcaattctcgggggtcaaatctgagttttcacgttaagc
cgtaTATCGTCTATTATTTTCCACTCCCAACGATGGTGCTGTTTCTTATG
CGACTCCACCTGTCACTTATTGTGAAAAATACCGCAAGCCTGCAAGGGGT
GTATTTGAGAAAAGTCTCGATTTCCGAGAGGACTTGAACTCATTTAAAGA
TGTAAAAATTGATACCAGATATCCCAATATCCCCTTATCTTAGATATCAC
GTCCAAGGAAAATGGTAGAAAGGTTTAAGACTTCTTTCGTAAGGACATAA
CACAAAAAAATGGGCTCGTTCAGAAAGAATTTGAACATGGGTGAGGatat
aaccttttttttgaaatttactcCCTGGACATAGATCGCAGATCACAAAT
TGCATATAGAAAACAGATCTCAgcccccggacattcaaaattactcctaa
acagagcaagtttgctCCCAAAACAAGgtaaattttacagatttttcact
acccctccGGACAATATATTCAATATATCCTCCACACTCCATGTACAaag
attttctggaagagcccaatgaggtcgcttaacctttttgtttacatttt
atacaGGATTCACCAAAGATTCCAGAAGGCGATGTCATCAATAAGAATGA
AGGTATTATCGAATTTTAAAATCACCGTGAAAATTTCAGgcataataaaa
tataaattataaaaaaaaaattttcagaaaaggtGCCCTAGgactagacg
atcctatcgtctacacaagatcactaaaaagggaatagtttaggagaggc
gtgataaattcgggtggagtaagcagtggcggagatgtttacagtgttcc
aaaactctactgccacttttttcccgtaaaccgccctgacgccctaactc
tttctcgcatttactttaaacggacgatagcatcgtctacccTAGAGGAC
CCTCCAAAAACATAAAGCAGGAGTTGTTTTAGTCAAAGTTCTATAAGTCT
CAATCTCAAATCATCAAAGAAGAATAGTTAGTTCCAAGTTAGACCTAGTC
CCTAGTTCAGTGAAATTTAAGAAATCTCGTAACATCCCTGTTCCCTCGAA
CTGTGTTCTATTGGAGAAAGAAGGGAATCTTCTATTCAGGGTCTCCACCG
TGAGAAAGTTACTTACTCCAATTTCTACACTTCCATCAGCCACGGTGCAA
Caattttcctcagtggggataaaaattcctattaaatcccagtggggata
aaaattcctattaaaTCCCAGTGGGGGGGTAGATATTCTATTGTTCGAAG
ATTAGTGGGGATGGTTTAGGATTGCAATTtctaaacatttaatttcgagt
gggaataaaatataagtcaatttcccagtggggctgaatttCGGTgtatt
ttcctaccggggacgaaatttttgcaaggtttcccagtggggctggggtc
ccagcgggtatgtgacacaggggtgtatttctAAAACACTGAAATTTCCT
GCGATCAGGGCTTTCATTTCAATATGAATCTCTTTCAGAATTTTACACAG
AAAGGGGAAAAATCATCCAAGAAATGGACGTATTACCTTTACAGTGGAAA
TTATCCTTCAAATTCAAGCCGAGGGTGATGGGCTATGAAAAGATTTCATC
TCTCATCCATTTCCAAAGCAAGAAAATTTCCGGTGGAAGTAAAGCAAATA
TTATTGCAGCTGGGGTCTCGAAAAACCAGCATTTGTATGTCAAGCTCATA
ACAGCGACGAATTTCACAGCATTTTATACCTATTCGAAGGAACCCCTTCA
ACCAGAACAATGGATTTATGTTCGAATCAAGTAAGTCTTATCGTGGCCGA
GTTTTGATAAATTGGAAAGCTCGATTAAGTGGCTCGGTAGTATATGGTTT
TCCACTTCAACCAAAATGGTTTTAAAGGAATCAGCTGAGCAATATTTCTG
ATTAATTGCTGAGTAAGCACATTCCGGACATCCCGCATATCCCTTTGGAA
CCAAAAAAGCAAGTGGGCCAGCAGGGCCAGCATGGTGTTTGTAGAATGTA
CGATTCTCTTATTTTGCCAAGGTTGCAAAGGTTTTATTTTACCCTAGAAT
ATTATGCTGCATGTTCACCTATCAaccataggccatttcacagttgCAAA
GCGTAATTGGTAATCAGGACCATTGCACACTAACCAACGGGAAACCGTTA
TTTGGGCGCAATCaatcctgattacccatgatccatttcgactgtgaaat
ggtctATTAAAGTATTTGAAGATATGCGTAAGTTTAGCAGGAAGAATTGA
CGTTATTCCAAGAATAAATGGTCGAAATCCCACCTTGAATGTGACTTTGT
GAACCATGGGTTTTTAGCTTCCTTTATACCTCTAGTTCATATTTTTCGAT
GGTTTTCAGCCAGATTAAGTGGTACTAGGTTCGTACCAGTCTTAAGTTTA
TCATTTTTTGTCGAGATGGagttttacaagctcttatttgattttgttgg
tcattaaccagtaataaaactttttctaaagaacgcgtcatttttattac
ttcaaatgaccaattaaagtatcttataaaaactccatctcatctgcttT
ATTTCCTAGTAAACTCAAGCCCGGTGACCTTAACATTTTAAGGGCTGACA
GAATTTTTTATATTGTCACCATAGCCTGTATCAATTGAACAACGGAAAAT
ATTATATATTCTGGGCAATTGATAACCAATTACAAAACGATGTTGAAGTA
CCAGGATGGGGGACTGTTTACACCGACATCCAAGTTTTGGTTACCGCTAA
AGGATCGAATGTAGTGTCTGGTAAAATGAAAGAACTTAAGTTCCAACCTT
CAAAAGGTAAAAATAATTCtattacagtatgtggcccccaaaacggcgat
caaatttgaaatttctctcatatctagaggaaaagagattttacaaaaat
ttttgctgcatgaaaacctttaacatNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNcaactgaaactgaaaatattaagctttaaagatatttttctc
ctatattttgcaaaaaaatgacagaatttgccgtttttgctgattcagcg
aaaatttttatttttataatgttattttttgttataaactattaactcaa
ggtgataggaatagaattccaagattttttgctttttctgatatttagaa
tttttggttttgtcaatgctgattcagggctccaaaatactggttgacct
tcaagatgctatatcttttacccagcctctaaagtcacagatttacattt
tctgaacggcattaggtgtagaaagtttcctataccccttattttcaata
tccaagggagctagagtgagttatatgcaatttttatctaattttagttt
taaaatatattctttagacgcaaatttgttattttgaatccgtctcaaac
cagcaaaaacatgctcatttttaagtataaccatcattctttcaaaataa
accaaaatcgtttaattctgataaatctacaagtcagaatcttcatttga
atgaaaacctccgttttgggggccgtctccgttttgggggccatatactg
tatgaAGAATCCTGATAGCNtctcgaaaaactatatagaagacttttaaa
cgggtatagccgatttcattacctaactcgagataattcacgcagaagat
gctatttatggtcaattttgcccaaagtgtggcgaaaagtggaacttgcg
catgaaatatctcgagttaggtaatggAAATCAGCgataaccgtttaaaa
gtcttctatatagtttttcgagtttcagctagatcttatttttttcctac
aaacagcctgtatttttgtaacacgaccacactatacAGTATGTGCCACT
Ctcctgaccatagtcggaaaaatagtcggaaaattgattttagtatttga
acataaaagttctattttagattctttaacacttttaacaaagaacgTTA
TTAAAGAACGTTAATGACGTTacgaactttaaaaagacgttaataatatg
ttgcatcaccttcttttataaaaagtgctaagttttaatgggtaattaac
ctttttgtttcgaagttttttcaaactgtcggcaaagaattgaaccgttt
taaatttttcggaaaatttttcaaaattaatgcatcaaaagttatgttat
ggttgtttttctataaaaaattgggatggaaaattggtcaaaaagcacga
ttttcaagattttgaatcgaataagcttttaaaaaaattttccgaaaaac
taattttagttcgataaaataaactaagctcttcaaagttgaaatactct
tctgaGCAagagtcttcattttcttctttatcaattttttttcattgcga
ttcttaaattttcagactcacagatggttggcctaacagaaaatgtataa
catgtcaaatTTTCTCCGCTACATTAATACAAATTAATACAATAtcttca
gtacagcccgaaaaaaccggtcgttattgtatttgttaaccgtttcctta
agcttcgattgatttttagcgctttatctaGGAAAAATAgtgaaataaag
cgaaaaaaaaaagcgaaaagagataaaaaattgttataatttctgagtca
gtaataacaagcaacatgctgaatgaacctacctaatgattaacatcagt
tgaaaataagaaaaaagtgacaataattgtacaaaaattcagaatggaaa
aaaNNacgaaaatcacttaaaccattcagacccaaaaaaccttttaagct
gtttttggcccaaatttgcccaaaaaaaatttccttaaaaatctggctcc
gtcacattgtgggcattgtcattttgcatcattgtgcaaaaaatcagaaa
aaaattatgagtcaacattgagaagctatattttcttatttggttaaaag
gaatttccccaaaatacgaaaatccgtcttttaaccctattcgtactagg
gggtggggggctctttctgttcggaggtcaaactcttgctaatagctcct
gaaataatagagcttttgccgtgaaattttctgtaaattcctaactttta
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTCacaaaattgacacttttccaatacaaatttattttcat
tgtcaaatatatcgtttaaaccgtaatttattgaatatttagaataaaat
aagcattttaaacgcaggcaatttttttctaaagcatTTGTTAGAacaca
atagctatttataagaacaaaggaaattttcggtttttgctcactttagg
catgagtgacgtcatcaaaaaaaatttttgtcaaaagttaccttgcgtca
caaggatcttgtgtgccaaatttcatccaaaaagacacactagatcaaaa
gttaaggggtggtacaggaaaagcccccccccctagttctgaaccgcccc
taaaagcctaagttgaatagggttaaggcgaataagaattttccaggaaa
aaacacttaagccattctttaaagaatcttgccctccatctttgtacaaa
atatcagaaaaaagtaatgacaggattttgcacaaagtccaaaaaaccct
atttttaggtagtttttggcccaaatttgcccaaatattatttttttcga
aaatcgggctccgtcacattttaggcattgccattttgcatcattgtgca
aaaaatcagaaaaaaataatgattcaactttgagaaaagctatattttct
tatttggttaaagggagtttccccaaaatacgaaaatccgttttttaagg
cgaataagaattttccgggaaaaaccacttcagccattctttagagaatc
ttgccctccatcttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaatcagaaaaaagtaatgacagaa
ttttgcacaaagtccaaaaaaccctatttttaggtagtttttggcccaaa
tttgcccaaataaattttttctcaaaactcgggctccgtcacgttctggg
cattgccattttgcatcattgtgcaaaaaatcagaaaaaactaatgagcc
aatcctgagaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaa
cgcattgttcattttcctttgaaaaagtgacgtcacaatgaattttccta
acgacgggcaactctggacagtgtaggcccgtcgtcatgcgaaatgaaac
aatgaattgcgcaaaaagccgtgtagctcgcttcgaaaaagtaaccggtt
aacaataggcaaaaatgcatattttgaatgtggcaaatattaaaaattca
ctatggtcagagcccttaagggtaccttttttggatttccaaagtcccgc
taagggtcggaaaaatctgTAAGTAGCGTAGACATTTATGGAAGAGTGCT
GGTTTTTAAAACACTGCAATACACAGGATGCGAAATTAAAGTCTGAAAat
aaatcacgcttttactcgaaatttttatgtgcttgttacatgacatttct
gattggttcaaatttattgacactaataaagttatcagctgtaagttgta
aagcaagtaacataaaatcacgtgaacgttttcgagtaatcacatgtttt
gactaaACTGATATCAtgttgcaacccgtgtattagctattcataatata
aaagaATTATTAGTGTGTCATAAAATCTGAATtcctcttgtctacgctac
tgactCCCCAAGATACTTGAAAACCTAAATCTAAAGAACCGCAAGCCACG
TGGGTCCGTTAAACTTACAACCTcgagtttttttaattcaaagggagaat
caaaatggtttgagaTAATTGGCcagcataaaatttctttgGTCCAGAGT
AAAGCCTTCTATTGTATTTTTGTCTAACTATTTCTCAAAGCGGAGATAtc
ccaatttgaaatttctaaaaatgggtTCCTTTACAGTTCTTAGGTCAAAA
TTCTATTTGTTTTCTTACTAAAATTCAAAACTTGTAACTTGGATTTTTGG
accccgattttcgaaaatagcaaaaatattttgagattttaatgATGAAA
CTAGAAGGAATTCACacgccaaatatctcaaaccatttAATAACCCTTTT
AACTTTGAActtataaagcattaaaaactaTTTCTTTTATAGGAATTACT
TATAACAGtggattgttacaagaaatcaTTCCAAAATGGGGAAAATCATG
GCTCATAAAAGTCTCATTCAAAGTTGTAAAGCAACCAATAGAGAAATGga
attgtatttttcatttcgtaAAAGATGGAGGCTACTTTAACCGTCTACCG
ACAATGTACTTCAAATCTGACACAAACGAAGTACAATTTGTACTTTGCCA
AGACCCTACAAATCGTAATCTTTGCCTAAATACCTTCCTACCGTCATTTG
TTTTAAATACAAAATATGATTTCGAAATCAAACATCAATTGGAAGGAAAT
GGATATTATATGTCTGTTTACATCAATGGCGTACTAGAAAAACGTGACGT
TACTTTTACCAACCCGGGAGTTTACGAGAATGTTGAAGTGTATATTGGAC
CA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000113TCONS_00000113Clytia hemisphaericatranscript
TCONS_00000114TCONS_00000114Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000113-proteinTCONS_00000113-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2147059..2156560 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.08	0.08	0.04	0.04	0.31	0.04	0.25	0.11	0.1	0	0.39	0.1	3.28	2.6	0.82	0.83	1.48	2.19	3.23	3.61	3.51	2.88	0.63	2.18	2.34	2.99	0.37	0.25	0.04	0.2