XLOC_000279 (gene) - C. hemisphaerica

Overview
NameXLOC_000279
Unique NameXLOC_000279
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000002:575606..585982+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000279 ID=XLOC_000279|Name=XLOC_000279|organism=Clytia hemisphaerica|type=gene|length=10377bp|location=Sequence derived from alignment at sc0000002:575606..585982+ (Clytia hemisphaerica)
GGAAAATGGGCGAGAAGAATAAGTTCGGAACACTCCGCAATAAATACAGT
catgtgaaaaaaatttcgtCAAAAAATCCAAGAGTGAGTATAAGAGTGAA
AGTTCTTGGCTTTCCAGTTCTTTCACTTCTAAATTGTTAAAgctgattta
attttttctaaaatatttgggCTGTTTGTTTTATCTTCACGTCAACCATT
AAATTTGTTGTGCTTTGATCGTTCACttgaaaattgtttggttcagagaa
ggacttttttcaaattttaatacgTACAGTAGCTAGCTATAAAAAATGGA
TTaaattttgtgtgaaaaaacttttgcgcATGGAATGGAGGATCAAAATT
CTTCGCGTAGACAAATTCTTGCCaatcagcctctttttcacccaatttct
tttgttttcctaaGAGGTTTCtgttttataaatattttgtgcaaattAAA
ATAGGACCCTCCCGACGCGGTGCCTCGGAAACTTCTGGAGTTTTCggagc
agctaaaaaaacactatttttctctccgGAAATTCCAGAGCTCTTCCGGT
GCTTCcggagcaagtgatttttaacactttctaaaaaaccgtttaaacat
ggttacaagcaaaaaatattcaaaatattgatattaTGGTTCAGCCATGG
atgtataaagaaacaggagaagtatgctattgtaaccatgctcgccctac
gattaaaaatattacgaggtatgcatgctcataatctcatatatcgtgca
tttttaatgagctcttttgttgataggtaaaATCTtgcttattggctaac
ttaattGTTGGAAATAATATAAGATgggacgagattcattgtttctgaca
ttggtgtaagaaaatatttggattaaaaaagggcctgtaaactttgcaat
ccttcatcaaatgacaagatttttNNNNNNNNNNNNNNgtcaacattttc
ttcaaggtgaactctattgcttaatactttcctccaaaattctccagtga
ctttttgtctacaaattgggtctgaaattgtgtgtgcttataaagaactt
ttcattttctggcttgagaaaatatcttttcaaaacaaaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgcctagaatttcttttgatttattacataaaagaaatca
aaagactttaacgaccaattaccgacaaattcatctcctgtctttcttta
tacctctatggttcagccattaatgaaattgaatttgtcacattatATTT
AGAAGCATCACTTTGGTCGAAatatcgaaaaaattaaaaaacgtgAGGGT
TCACATGAGTCggctgattttttttaaatacgtgCGTGCGCAGTTAGCTT
TCACATGATTAGCACAGCGAGCGATATCGTAATTATATCACAGACATCTT
CTCCGGAACCTTCAGGAGTTCCGGTGCAGACCAATCACCGAAAATCTAAC
TCCGGAACACCGGAAGTCCTCCGGAATCTTCCGGTGTTCCAGAGCATGAA
AAAAAACAGCACTTTTTGCTCTGGACAtttccggagcgccgggagggtcc
tatAATAAAATCCTCttgaaatttaatccactttaGGCAGGCAGCAGAgc
cacaaataacttgtgttcgcgTCGTCCGACCAACTCAgagtttttcttac
ttttccaaatcttttgagTCGGAAAGTCCTGCCTaactcaaatttgaaaa
aatttcatatttccaaCAATTCCGATTGCCGACCTTATCTACCATACCAA
CTCACTTTTTGGAGctgaacacaagttatttgtgaccGCGGCCTTAAGAA
TGTACATAAGGTAAGACGTGTCAAAAGAAATGGATTAACATTTGattcat
attttgttttttcacaaAAGCTAATGGAGTTGGATGTTCTTGCTTTTTTA
GACAGTTTAGCCAGAATCATGTTTTTTCTTCAATGACACTAAGCAAGcat
tcaataaaagaaaacaaagattttaaaaagaaaaacccaAATAAAGGACT
AAAAATGATTGTTGACCAATGTTGGGGATATGTAAAACTCAAAATCATCC
TTTGATATATATAACCAAGGGGCCTGAAGGGGCACTTGAGTCTCAACCCA
AACATACACAGtatcagggaaatccctcaattgcggtagtaatttcttac
tgcaattgcggtataaacgtcacttttaaatttttcatatagcgcaattg
cagtatattcaagaaacagaattcaagattcaaggagaaaacaggcaatt
tttgtacataattggtcatatctttttaacgcacagacaaaatatttttt
ccgtagatcagattattttaataaagaaaagctaTCTTCTCGTACAATTt
tttacagtcgatgtttgtttatctttgtcgaccagcactatatgtagcTG
TTATAAGACTTTGTAGGCTAATCACGAATGAAaactactgcaattgcagt
atacagcaattgagggatttccctgactgataCACGAANACTGTTATAAG
ACTTTGTAGGCTAATCACGAATGAAaactactgcaattgcagtatacagc
aattgagggatttccctgactgataCACGAAACTTTTGCgatcatgttcg
ggccaaaataaaaaaagcatgCAATGTTCAGGACGTGATATGATATTGGG
CCACAAAAATTGGGATTTTAACCTTCAAAAACCTGGCCCGAATATGGTCC
TTGAAGGGAAAATATGTTATATGGCggaattgttttattttgttcaaatg
tgccaaatgtttttaaaaatccaATCACAGCGATATccaattgttttgtt
ttgttttgttcaaTCACATTCAATTGTGTTAAAAGTATaaacatcaaatc
aaatgaaagtgctttcatccaatcaggcgaaccctaaaaatatttttgtt
tccggtccaccgggtgacgaaaaaaacactcacccggccggccgcaaaaa
aattttttttggctaaatttcgatcccaaaacacgattttttaaagcact
cgtagaagttaaaatgctggtcttctttaccttaaatctgtagtaacttg
acaccgctacaggctttggcataagaaaaattcacgtgtgatcatcgcac
gcctagaTTTTAATTTATAGTGGTCTAGGCGTGCGATTATTCAAATACAA
TTGAATATTCAATATCTCTAAGAacactctctttcattttgaatatttat
cttcaattgctaaaggctccaaactgtgattacgaagtgaacttttttga
gaaaaaagtggagtgagagaaacatttccccaattttttaaatcctcact
ttatgaatgtttctttttattttactcacaagtcagcatgattcctttta
taaaaataaagctgtttacttactgaaaagtccccacattgtgaatgttt
ctatttattttactcacaaatcagcatgattcttttataaaaaccaagtt
gtatataaaaaaaacattcttaaaagttgagttgtaagcaagaattaaca
aaaacaatgcagggtttagtttgagattaataaaatttcatttctataac
aatgatcaggataaaaccttcattccaagtgatttctaggcgtgcatttt
acagtagaatataaaatatcacgtgCGATAAATCANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
taaatcacacgcctcaaaaactgattcacgaaagttttccaaacaaacaa
actaaccctaaccctaacgatgatgtacgaaaaaaaatgcggccgggtga
cgatgaaataaattttcacccggccggtggaccggaaacaaaaatttttt
tcgggttCGCCTCAGAAAGGATTTTTGACAATCTTAACTCTGGCATCAAA
TTCCAGCTTTTGACTTTTGACAACTATACAAGGATCctgttagcctggat
atccaagctcaaaattttagaaaaacaaaaattagtccggcggcgatcca
ggatcacccttacaattagtaaatatgggtttttattttattttcccatc
atatggtcccttgggaccccaaaaccagtttttgccaggctggcaaagct
ggggaaaGTTTTTTgtgggggcttgaagggggtagggtcattttagcctg
ggggtccttagaaagtcgatttttgaagttctcatttagctaaaactgat
tgtgccatcagatagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CATTTGGCGGACTTAGTCTCCCGGAATTggctgatacgtcttcaaaaatg
caatattttatgctgacgtcagcatttttgagagaatttccaGCGAAAGA
AACCACTTTTAACcgatgcgtctcgaagagtactatcgattagaggggtc
atttatagggtttcctaggctagatcatgagatattagagtttgaaattt
tgctgactcagcagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNagaatgcaaatcgctctagggagaccaggctgtaaac
cagaacataaaatatcaaaaactagactgtgaaatagtttacagcctgga
tatccaggctaggatCCTGTTGATGGATTCTAATTCTATCTTTAAGGGGA
ATTAGAGTGTGTTTCGTCAGTAAGTTTGAAGGGATTTGAATTTAATTGAC
AATGGGAAATTATCAAACAGTAAAAGGTCAAATTGGAGAGCATCAGCTGT
ATATTATCACATTTGAATGGAAAAGAATAGTAAAAAGTCTTGCTCATCTT
TACAAATTTGCAGTTGGCAcgcctcaaaaaaaaaaaaataaatactttgA
TTACAAAACGATCATAGGCTTATCGCCAACTTACAGGACTTGTATGCCCT
TCTCACACAGAAGACCTGCGTTGACTTTAAAAACTAATCTTAAGTTAGCT
ATTTTGTTGAAGGTGTACCCCttcttaaatttgaaaatttgtatcGGCGT
CTCATATAATCTATATAtctgtatatattaatacgcttaaacgtgtgtgt
ttacaacattttgtaaaaagttttcgaaaatctaacaaaggtctacaaag
cctcctcttcatggcgttgaaccatcatctttttgcaccttaagcagatt
tcctaccactagactaactttgagaccccaaaatactattttctattcac
caaatttttggagcttgatgggttaaaatcaaccatcttcccaatttttt
ttgtcattttaaaaaattcttattcttaaaaatttctgtttacaatagca
gctccctatcactttcaaaacttttcaaaacttttcaaagtccttcaaag
tctttcaaaatctttcaaagtctttcaaagtcaccctcgaatgtccAACC
ACGATGGCTACTGTAGCCACGATAGCTAAAAGGatctaaaatatactttt
gttaagccatttatttaattgtggttaaaaattacaatgcaatgttatct
tctttctcttttatttcctaaaatcaaaatcaaatcatcaatCGGCAGCT
ATCTTTCTGCCGTTATaattttttagatgtgtagtgattcactggaatgg
gacacgcagcgtgcgacgctgcgcatacggctagtatTCTTTTATAATAA
TATTCTTCAATTAGAACGTCAAATCTTTTATTGgataggttttttttttc
aaataatagtGTTAAATTTCCTGCTCAACCAAAGCTTGTCTACCTTCCTC
TCGAGTCTTGCCTGGAAAGATATAAAAAGATGGAAGTAAAATGGGGACAG
GTTTTTTTTAGGgttaatcaaaaagaaatatctAAGAGACCCCTTTGCAT
ATAATTATGTCTGTTATTATAATTATGTCAGGCCATGTCTGTGATGTGCA
CGTCAAAATTTTATACTACACGGTACCAcatagtttttttgttttaacaT
GAAATGTacactttaatcgtagaaattttagcgagactaattttagcgtt
ttagcaagttttccctattttcgctaaaataaatctcgctaaaacgcACC
GAATTGACAGattgctaaaatttatccgcgcgaaatttttcgaaaagctg
attgctaaaataaatccagtatgttttttcatcattttgttatcattttc
atatttttttcaaaaactagtaATATGGGCGTAAATTTCCAAGTTTTTCT
GTTCTTAGTCAAGAATTGTGTTACAAAGANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcgtgattcgct
aaaataaatccaaaaaaaatcaagattttcctgactcgctaatatgcgct
aaaattaatctcgctaaaatttctacgattaaagtatatgATTAAATCAA
TATATTGCTGGATTTAGTTTTGAGCGACAGAAGAATGATTATTCTATGCT
GAGAGTATTTAGAACATGTCATGTTTTAATGTTGTAGTAattgttttttt
caactttgCAATTAGCAAAGAAAGTTTCCAATAAGTTATAACAAAAAAAG
GTGCCCATTCCATTGATTAAAACCAAAGAGGGCTACAGTATTCACATTAT
CAATATTTGAGTGAGTTAATGCACCAACTTAGAGTGCTCCTAATGAGTAT
TTTATTATATTGGACTGGCTATTTTCTAAGAACATTATATTATACAATGT
TTTTAAGATATAGTAATTACTTAACAAACTGCTATTAAATCTGTTAATGA
GTTACTGACGTATGTACCTCAAAGCTGTTTACAATGCACTAATGTGAAAG
ATGAAAATTGatgattaaaaaacaaaaaactgatttCTTACATCATAGTA
GATCACATGTATACTACACTCATCCTAATTGCGTTTCTTTAATGTTGAGT
ATCTATTTGGAAAGTAAAGTTTGTTTATAATATTTAAAGTTTTACTAGCT
ATTATGTCAAATGTAATTAATCATGTTGGTTGAAGtttacataaaattgt
catctTTCAGatagtaaaatataaaaaagatgcAAGCACCACCAGCCTAT
AGTGAAAAATCACAAGATCCATATGCGCCACCACCAGGCCAACCGTATCC
TCCACAACAACCAGGATACCCACCCACCAGCCAACCTGGTTATCCACCAA
CTAGTCAACCTGGTTATGCACCACCACCAGGAGCCTATCCACCCCCTGGT
GCCTACCCACCACCACAACAAGCAGGATATCAACAACAATATGCTCCACC
ACCTGGTCCACCACCAATGGCTACCAACCAGGCCGTCCACCAGCAAACCA
CAGTAATCACCACACAGCCAACAACACAAGTCCTAGCTGTTAGTTTTGGT
GAAATGCCTACTTCATGCACATGTCCTCATTGTCAAGCACAAATTGTGAC
CGCTGTTCATTATGAAGCTGGTTCCCTTGCATGGATCATTTGTTGTGTCC
TTTTGTTTGTGTAAGTAAACAACTTCTTTTACCTTCACTGCTCAGTGTGA
ATTATTGAGTGATGTTTGTCCTACAAATTACTGATGCACAATTGCATCGT
GTTGAATATTAGTTGGGAAGGTGAATGTTTAATACTTTTTTTCTTAAGGT
TATCAACCACACTTTGAATTTAGCAGTTTTACGGTTACAATGTTCACGGG
GTCAATCATATACTTTTTAACACTATCACTTTAGGTATCCTTTGTTTCAG
TAGAAGCTTTTCATACAATATCAAACATTATATAATGATGTAAATTTCTA
TGTTAAATTACATTCTTCTTGTTATTTTCAGCTTCTGGCCTTTGATGTGT
CTGCCGTTCTGTTTGACTTCATTGCAAGATGCTGTTCACACATGTCCTAA
TTGTAAGAGACAAGTTGGTGCTTTCAGACGTTAAGGGGGATTGTGGGGTC
TGGGCCCTATTTCTTTGTGGTAGTGTGAGAAGAAGGAgagagaaaaattc
ttttatattttaaatatgtTTATTGATAATATTATGTGTTTTGTCGGTTT
TATGTTTTAGGGTGATAGTTATGTATCCCTTTTATTATATATCAGTTTTT
AAGTTGAAACTTTGTTTTTGATAACTACTCCCATTTGACTTATAAGTCTG
GAGGATAACTCGTTTTATTTTAAGGTTGAGTCACTAGAAATTTATAATTC
TCTTTATAAAGAATTCAGTTCTCAAATCGTTCTATTATATTCAGGTAAAA
GGATAAGGTACTAAATAACATAATTATAAGTACACTTTTCCATTCCTTAG
GCTATTATAGTCGTATCCTTAGtgatcaaaatttcatttagaAAGGCTAA
GactttcaattttctttgtatatTGTATGTTTTATTCCAACTGCAGTCAA
ACACCATTGACTTAATTGACTGACACTCTACATTTCACAATCACTTTTTA
GTTTGTGGAAGTTTTGTTTCAACAGTGGATCACCTTTCAACCTCAAAAAT
CACTCTTTCTCGAAAGGGAAATTCCTGTACTTGCTCTCAAATCAAAAGTC
TAATCACCCAATCAGTAGAATTAACTCCCTTCATATTTTATAGTTCAATA
AAGCTTTTATTAATTTGTGTATTATTACTGAAATGATTtccacttgtttt
ttttttcaattttggagttttctataatttttgtttgcatttttatttgt
aaaatgATAAGAATGAAATATATCTGCACGTACGTCTACACTCTTTTAAA
ATGATATggtattttcaatttaaaaatctagTCATCAATGTTGATTTTTA
AAACCAGTGATCTTTTTTCATAAACTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000430TCONS_00000430Clytia hemisphaericatranscript
TCONS_00000431TCONS_00000431Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000431-proteinTCONS_00000431-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:575606..585982 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
LITAFPREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X2 Homo Sapiens
CDIP1cell death-inducing p53-target protein 1 isoform a Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
110.16	95.83	402.23	468.15	178.57	145.14	217.93	240.93	268.35	359.48	279.66	182.79	330.3	304.38	315.13	389.27	270.26	268.41	316.96	426.58	331.28	357.5	179.59	198.09	256.2	257.68	345.57	386.96	305.02	260.51