XLOC_001434 (gene) - C. hemisphaerica

Overview
NameXLOC_001434
Unique NameXLOC_001434
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000021:986638..996424+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001434 ID=XLOC_001434|Name=XLOC_001434|organism=Clytia hemisphaerica|type=gene|length=9787bp|location=Sequence derived from alignment at sc0000021:986638..996424+ (Clytia hemisphaerica)
caaatcaaactgAAGTATATATACTGAAGTAAGTAACTTCTGACTGACAG
tactaaaagccaaaaaaaagattctggaaaaaacGGCTTCAGccgccact
ttttagagaacctaaAAAGAGCTTTATAACTCGGTTTTTAAGGTACTCTA
GTAGAAAAATAAATGCTTTGTTAGAGAGAATAGtgatttagaaaaatcaa
agcgACAGCCTTGTGTGGTGGGTGATAAAATTATCAGACTCGGGTTTTCC
AGGCCTAAtaaagtcaaaatttaaaaaaaaaagaatcacaAGCTTAAATT
AAGAAAGAAACAAGATCATCCTTAATATGTATACCTGTATAATGATTACG
ATAATAATTTGATCCAACAAGCAGCAGGATTATCATGTCCTACGTGCAGT
CAAGGAGCTCTTTTAAAAGTTTCTTGGTGCAGTGGACAGTTGACGGGTTG
ACGGGTAACTAAAATAGTTTCCCGCCTTTGCTACCACCCCCGTAGAAATT
GATGGTGGACTGGCTTATGGAATTAAGCTTGAGGAATGCAAATGAGATAT
agtgaattaaaaaaatatattatctaATCGTTAAGGTGGCCATCCactgg
aaattgaaaaatcgacctTTTAACTTTAAATGTTGATTGCTTAATAACTA
AAAATGATATGGGCTTGAAACTTCCAGGTATTATTATTTATGACCTAAag
ttaatattaaaaaaaaattttagaaaaaaaaattggaagacgGGGGTTTG
GTAcgacttttcagaaaaatcaaaataatcttgTGTCAACGTTTTAGAGA
GAACTCCAAATACTTGGTTAATAATTTTTGGTATGTAGAGGCACTTTAGG
ACAAAGAATGGAAtgagcgaaaaaaatttttgaaaaatccaaaatccggg
ggtaaaagccaaaaaaacagttttttgaaaatatgagaTCTGGAATCAGT
GaaatctgaaaaatccttcGCTCATTCCACAGCCCTCATAGATGTGCAAA
TACCCTGAAAAAATCAGACCAATCGGACAACTAGATCCTGAGATTTTTCC
GCCACAGTAGTTGGGAACACCCGGATTGGCGTTTTGAGAAATCGtgcttt
taaaacataaattgccgttaaatgaaaagattatagttttcaatagggat
ttttttatgatttgagcCTATAAGGGAGTTTTCTACATTATTTCAAAGGA
ACTAAGGATTTAAAACTATTTAGAGTGAAAATTTTGTCCAATTTGAGTGA
CATTTTGATCATTTCCAGAAAAccgcaaaactttgaaaaaagaccGCAAA
ACTCATTTTCACCACGAAAACCACCCCGAAATGTAAATAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGCTGAAAG
CATAATGAAACCGCCAAAATCTAATCCCACACAGttgaaaaagtaatttg
aaGATGATTGTGTTGTTTTCTAAGAGATTCCTGgcaaaaaagcattaaaa
cagcacccaaaaaagaatatacaagcaaacaaaagttCTACATACCTTTG
GCGCACTACACAACAACCGACTGTGCtcttaatcaaaagaaatcacaaGT
TACATCATGATTAAATATTCCTTAGAGTTTTACAAACCTCCTTGTATAAT
AAGAGAACCATAAAACATCACTTACAGCAACAAATGTGGATGAAACACTC
AGCAAAAGTCAGTGAGCTTCATCCTCCAAAATACATTTCGCTAAATGCTC
AGAGCGCGCCGGcccattttccctttcctatctttcaccttacctgttta
ttctactttctgagacttagtttctcattNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCATGGGCGaagcattaaaagctt
aaaGGTAGGTAttttaaaacctaaaattttctgcttattctttactttta
tgaattgaaattttcagaggttGTTCTAGAGAAGTTATACTTGactttaa
gccaaaaaaataaaaaaccaccAAAAAAGTATCACTATTTTCAAACTCAG
TGGATGGCCACCTTAATATTTATTaataattaaagaaaaaataaaaagaa
tgtgAAGAATTATCAATTTTTTAATGTACTAGTTTTAATGAGCTAGTTTA
AtaaatgctattttttccatcttaAAACTTAACGCCCAAATCGTAGGCGT
AACCGCCCATAATTTTCCCGCCAAAATCGGACCACGttgcgaaaaataaa
aacgtgTTTTTCCGGGACAGGCGTTTTCACATTAACCCTAATTATCTACC
TTAATTAactattttttggaaaatatttttatgctgaATGCTTGCCCTTA
TTATTGTAACTAAAAATATTCTATTTTCTAGagttttaaacaatttttta
ctCCAAAATTTTAAGGTTTGATTTCCTCAACCCCCCTGGTGGGGTAATGG
TATGTTATTAGAAGGTCCGAAGTCGCTTTATTGTGCAATCTTATTTGCAT
AACAatagtttgttttgtttcgaaactttcacttttattgtttttttaat
gattcGAAAACTTTAGTACTGAAAATTGGAGTTCTCACATTTTCATTGAA
AGAGAAAAACTGCACTGACAACTTACTTCTGCTGCACCCAAACGAACCGA
ACTTCACGTATTTGAAAGCTTTGGTAGAGTTAGTCCTTCACAAATCAATA
TGGGAGAAAACGCTGTAAGTTATCTTTTCTACTGTACTTTCGCTTTTGTA
GCAGGAcgcatttgaaatttttccatgTGCTTAGTCCAGGCACCAGGGGG
AGAAGACTCAATTACAGTATAGAAGACGTCAAACTGAGGCAGGGGTGTCT
TGAGGGAAAATTCAAATGGGTGCATCTCATTCGTCCGACAACAAAACAGT
TCGAATCCAGACAATGGAATCAGCGTGAAAGTTTGTCCTCCAACTGCTTT
TTTGTCCAGAAACAATTGCCCAATCTTTGATGAGTCATATTTTGTCTGAC
AGCCAACCCAAAACCGTTTAcgttttcaatgttttcaatcaaatATCAAG
CACAAGCACAAGTTAGGCTGCGGTCACGTTGTGTTCATGTCATccaaccg
actcactttttatcttaaaaatctGACCCTTTTCTagtcagaaagtcaga
aaatgtgttggattttttaactatattattcaaagaattttgtaGATTGA
GTGTAGCTAGCATTTTgagtgtttttaagatttttatccACAATTTTTCC
ACAATTTTTTGCGTTAAAAAGCACTATGCAACTGCTTTTTCCAGACAGTa
ttaatcgaacgttcgattgtgatcaaaataatcaataatgatcgataata
atcgaaggtGGTTAGTGACCACCTATCCATTATATGGGTGATTGAATACT
CACTCGACTCCAGATTGTGGTATTTTCTTCAACCATTTTTCAtttcacgt
gcgtttgcgtagggtagggtaaaatggcgaaatgggaaaatcgaatttgg
caaaatttttcaacatttttcgtACACGTTTTTCGTgtgtattaaatttc
gtgattcactaaattgggcattttcaaaaagtgggaataaagaaagaaaa
tgactgattttgcttcaaacacaacgtattgggtgtaaacatacctaaaa
tagtaacaaaactaGTGAAAAAAATAGTTACTAAGTGTAAcaaatgtgac
tccccaagcgatccCCAAGTCCCTGAAAATGGGACCGGGCTTTAGACGGT
CTTTTAAGGGCCGGTAAATGACTggtaaaaatttaccaaaaggcCGCTAC
GAGTTTAGTTAATTTTGCTGCCGCTGCGAAGCGTAATCGCCTGGTTGACA
TCCTTTGACAACAATTTTTGATGTAATCGTTACTAAAAATCACTAACGAG
CGGCCACGAGCGTCTAGAAGCGGTCAGGAGGTCTGGAGGCCGATCTAAAA
CAAAAATCTGACCGCTACTAGACCGCTCGTAATACCGGACCAAGATCGGt
ctgattttcaggtactttttAAATCGCTTGGGAAGTCACAAAtgagtatt
ttcaatttttgacctattttgaaatttttttgcgtgtaattaatttcatt
attttgtatttttgaaaaatttaaacggtaTTAAGTTTCACAAAATTCGG
cctaaaaatttcgaaattaagtacccgcgaaatgtaacacgcgaaatata
ataccaataaggtatgttAAAAGTTTGAGTAAAGTTCAAGTAAGTTTGAA
GATTGAAAATCTGCCAATTCTATATTCATatttagaaaggcagggcagcg
tcTGTTGGTagtcaaaaagggcactttttctagtgtttttaccaaatttt
tagTGGTTTCAGTAATACTGGCTTTTTAACAATTTCACTTTTACTGGCCA
AGATTCCACTTTTACCGGGTCCTGCCTCTTTTTctattaccttattggaa
ctaattttcgcgggttttaattttagcgttgaaagtcgaaaaccgcgaaa
attaattcccgcgaaatacaattttttccaattttatcgaaaaatttgaa
aaatccctaggaaaataaaagaaatttgtccaaaaaaaatgaaaaaccgc
gaaaattaaaacccgcgaaaattccagaatggaaaaaaccgcgaaaatta
aaacccgcgaaatgcaatttttcagatattttttttcgaccgcgaaaatt
agttcccgcgaaaattagttccaataaggtagctATGGATCAGTCACACT
TGTTTCACTTTTAAAGCTTTCTAAGTAAACTGTGTTTTGTGGCCAGTCGC
TGCCAATCAGGCTACAGTCCGGTAATAAGACCAGACTATACGTTTTCCGG
CAACAAGAGAATAAGAACCAACTTTTTGGAAGCTTTATTGCagaacaaaa
gtttttccctagggattttccaacttttttgagttctttcttCTAATATA
TTAAATGAAACTAGCCATATGCGCAGCGTCACGCTGTGTGTCCCAATATA
GCGAATCACTATAAATCTAAAAAACTTTAACGGAAGAAAGATAGCTGCCA
ATTGAtaataagattttgattttataaaaaagataacatagcattgcaat
ttttaaccacaattgAGTAAATGGCCTAGAAGAATTAGATTTTAGATCTT
TTTAGACATCGTGGCTGGCCATCGTGGCTggacattcgagggtgactttg
aaagaatttgaaaaaatttgaaagtgataggaagccgctattgtaaacag
aaagtttaaagagcatctgaataagaattcttcaacatgaaaaattatat
ttgggaagaaggttgattttaaacCATCCAGTTCCAAGGTTCCTGTATAG
AAAATGGTCTCTTggcgtctcaaagttagtctagtggtaggaaatttGCA
TAtggtgcaaaaagatgatggttcaagGCCATGGAGAGGAggcttgtaga
gctttgttagaagtattaatatatagattagagaAACAATTTGAAAGTGA
AAGTTTAAGAGACCTTCAATGAAATAACTTATTTAATGCGTGCCACAATT
GCCATTGGCTTGCTGGTTCAAAAGAAtgcacattcttcaaaaagaccaga
aaagttttgaaagtgataggaaGCTGCtattgtaaacaaaaagttttaaa
gagcatctgaataagaattcttcaaaatgaaaaattatatttgggaAGAG
GGTTGTAGAAATGGGGTGTAGATGACTgccttagctctagtttagacggc
tgactttctgccctgcctattttAATTGTGGAGAAAGTGGGTtcaaagtt
ggcagttaaaatctttgcttgaaaaagattgaaagaagacattgcattga
cgtcaaaagagggcaatgcattgactttagacagcaaACTTTAagcccac
tttaattcacaattagaataggcagggcgaaaagggggctgtctaaacta
gagcttagacTTAACTCACTTTGCCAATATTTGGTCTTAGGACACTTTAA
ATCTGAGACAACACTATTAATCAGATTAATTTGCTTTAAAGTGAGCACTT
ATTTCTTATGTGAAAACCACTCTCAAAGGAAGTTCTCTAATTATACTAAG
ATGGTTAGTTCATGGTAGCAAAATAGCGTCAAACTTAAAGGCCTTATTTG
AAGTCCTGTGAATTCATCTGTTAATGTCAGTAGCCGAGTAGTACCTTTTA
GGCAAACatagttcggaccccccccccctttcttaaggggggggatgaca
ccttccaaaaaagtgaagaagggggatcagaaattttcattaaaaaaggg
GGGGGTAGCAAGGAGGGGGATCGTTTAAGAAGAGGGGTGGGGGCTTACAT
ATATTGTAGACTATTTTCTAGCACTGTTATGAAATTTGGTCTGCATGAAA
GGAAgttctttattttcactaaaaagtggtattatatttgccagacttaa
tttttctttactgtttcccttccctttttaccataaaaaatttagcccaa
aacctATAtaggataggcatttttaaaggttgggggttagaaccctttcc
gcactatgggCAAAGCTTCAGACTATGAATActgaacaatttttcaaaaa
taaaagcaaaatcaaGGAAATCTCCAATAAGGTATCTTGCTGTCAAGAAA
TGATCATAAAAGGTCCTTAGTAAGAAATTTAGCTCCTAGGGTGAAAAGTT
TACTTCAGCTAATCTATAATTTGAGAATGTCTGTCTATGTATGTGTGTAT
CTGTTTCTTTCTGCTCAAACTTTTAGGACAGGCTGTAGACTTAAAAATCG
TCAGATTTGACACTGGTTCCTTTTGTGAATAGGCTCGAGACCTATATAGC
TAAAACGTTCCACACTTTTAAGAGACTTAACTTTTACCACAGAAATATTC
TAGAGACTCTAGATAAACATTGAGTAAAATTtgtttgtttcagaaaacaa
cgGATATAAAGGGTAACGTTCTTTTCATTTTATCAGGAAACAAAAACGGA
AGAAAACCACATCAACTTGAAGGTTGTTGGAGCAGTAAGTAGATAATTAc
tattttaagttcttcttttcaaaattttacaaaacgGGTTTTCACCCAGC
CAGGGCAAGCCACTTTGACTCATTTCCTAACTAAAGAGAATTGAACTTGA
GAATTAATATGTAGAAGTTCTAACCATGGGtaaattgaattattttgaCC
ATCTTCTTTTCTAGGATAATTCAGAAGTACATTTCAAGATCAAAAAGACA
ACACAACTAAAGAAACTGAAACAAGCATATGCCGACCGTCAGGTAACTTA
AATGAACATTgttggaaaaataaaattgttgataGCTACTCGGCAGTCAA
AGTTCTACACGTTCCTAATTTCTGTTACGCCCCTACATTTCAGGGGTCGT
ATTTTTAAAATTCCAAGTACAGCCGAGCGAGTGGTTATTAATAATCTCAA
TTTTCGACCCCCTAGGTCTCAAAATTATCTTCTCATTTAATGCTTTTAAA
TCTGTTCATTTTTTAACTTCCTCCTTCAGGGTGTATCTTTACAATCGTTG
CGATTTTTATTTGATGGACAAAGGATAGCTGATGATATGTCACCTAAGGG
AGTAAGTAGTTTTCTTGACTTGATGACAATGCGTTACTTAAAAGAACTTA
TTATTGTGATGGACACCGACATCTAGCAGAAAAGGTCAGATCATTGTCCc
tattaaatcaaaattgataatTGCCTTTTGGCATTTTGATTGTTCAGCTG
TTTTATTTTCTGTCTAATACGAACGACTTTGAATTTCTTTGGCCTAAATA
AAACAATGTACATCCTAAATTTGACTCAATGAATATTTCTCAACCTTAAA
TTAATAAATCGAAATTATTTCTATAGCTCGAAATGGAAGAAGGAGATGTA
ATCGAAGTATACCAAGAACAAACTGGCGGAAGGTGATATAAGGTATGTCT
ACTCTAGAGAACAGATTGTATCATGTTATTTTTGTTGTTGGGGGAGATTC
ACTTGACTTTCGTCTGACCATACCCTTACGAAAGTGTGCTGATGTTAAAA
TTAACTTCaagcatagtcattataaataACCCTGGTCTGGCAATGtgttg
ttttagctttttgttcaattttattttgttacgaACAAAAGACACGTTGc
tatttgcatactttttgatcacgttaccaaaatctcctcttgggattact
ctattttctaatcacatgatcaaaaagtttgcaaaataaatcgatttggt
acgtaagctccattttttaacaataaaaagagacaaaagccttccagacc
agtgcttttataatgactatgcttCAAGATTACTGACTGACCCAAAAATA
CCCCTAAACTTCGTCCTAAACTACTAAACTCTCCAAGTGTTTTGATCCCG
GGCTCTATTACCCCCTCTTCAAGTTTTGGCAATGGCTTCAATAAAAGTTC
CTATTTACTTGTTTAGATATTTGGATTAAATGGGACATTTTGTAATTCGT
TAACATCGAGGAGACGCCGCGGCGGCCACGCAATGCAGTATTGGTTGGTG
TTTCGGAACGTTTGTAGATGATTTTAAACACAACTTGTAAATAAAAAGCG
ATAAAACTTGGAAATTCTGAGACATTGTTACCCTAATACTTGTCCTTTGT
TGTTGAAAACAGACATTTcttgatgaagatgaagaagaaacaaatctttt
tttgcgATAAAAAATGATTCATTTTTATTAGAGTTCTCCCCTTTTTTACt
gtgtacattttttttttgcttcaatATTTAGTCAATTATGACATCTTTGT
ACTCGCATCATGGAATATTGTTGAAACAAAAAGGCAAACCTTTTTATATG
AAAAGTTTCATGAGTATGTTATTGATGTTTCTGCTTTTTAGACCTACCTA
GTAGGTCCTATAATATAACCCTTGTCCGCTCGTCcgtctgttcgtctgtt
accagctgcTTTTCTCGGGACTGGCCCAttaaattttcctgattttttgc
atagtgatgcaaaatggcagaACCCATAAAGTGACggggcccgattttcg
aaaaaaaaagaattaaattgagaattaaacttgaataaagctgaaaatta
attcaagaaattgaaaaatcataaaaagcattccata
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002648TCONS_00002648Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:986638..996424 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
617.35	613.74	866.72	879.19	584.14	459.93	377.68	384.74	208.43	196.62	191.62	214	185.49	210.56	178.15	155.22	228.52	214.02	140.9	137.47	184.4	179.58	373.63	303.49	268.11	287.41	175.9	167.3	225.35	244.46