XLOC_001535 (gene) - C. hemisphaerica

Overview
NameXLOC_001535
Unique NameXLOC_001535
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000023:662190..670084+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001535 ID=XLOC_001535|Name=XLOC_001535|organism=Clytia hemisphaerica|type=gene|length=7895bp|location=Sequence derived from alignment at sc0000023:662190..670084+ (Clytia hemisphaerica)
cgttgcgtcacagcgaaaggtttgtttttattttagtttgtatctttgaa
agaccccatcggctttaggctgggctgtcggctttaggacctctcacggt
aatGATCGATAACAACCGAAGGTGATCAGTGACCACttaaggcggcaatc
aaaaatatgttgcgTTCGGGTCGGCCAACCGActgttttttacaagaaaa
cctGATTCGGAAAGTCGGTAAAATCGTCGGGTTTTTTTGGACGCTGTTCG
CAGGTTGGGATCTTTCCTATAATGGCACGGGCGAACGGAGCATGTCTTTA
AATCATTAGTTTTTGTTTCCTtataacccacattgagtcccgttcaagat
tttcatgtacccttattgaaattttacagTAATGTCAAAATTCAGCAACG
TGGTAGGGCCAATACCGAAAGTAAGGGTCGCTTTAAGGTTAACACATGCG
CATGcacatttagtttggcaaattaaagatggtgggcggcataagattct
gttgattgccgacttgattcatcggaatttactagatcttaaaaatccga
caaaatttactaccgaccgaccgaccgatcgaccgactggatttgaagat
gttttaggatccgaatgaaacatattttttattgccGCCTTATCGATTCT
ATTGGTGATCGATTACTCACTCAACTCCAAATCATGAAATTTCTTTCGAC
CATTTTCGAATTGTTCGATCGTTTCAATTACTGTTCGATTACTTTCAATC
ActttcgatcatattgaataccttcaaTTGTGTCGGATATGTTTCCTGTA
GCAAAGCAACAGAATCTTGAACCAAGTTTATCTCGTCCAATAAAATACGA
GACTGAGTTTATTTCGTCCAATAAAACATGCAATTTACGCGCGAAAACCA
CTTGGTTAAtttgaggaaacccagggcgaGCACACTTAAAATGGCAGGGA
AGTACTGAAGGTGATTCTTATGGCTTCTTTTTGTGGTTTGGTTTTAGGTC
AATGTTTTCGGTTTTTCCAAGGTATATCTATGTAATCAACTGGTTATCAA
AGAAAACATGGTTATCAAAGTTATcaaaagtaatcaataacaatcaaagt
actcgaacggttatcaagttttcaaagggttgttaagaaagtgatcaAAG
ActcagaatttttttgaaatttgggtACCCGaaattcgattgttaatcga
taaaTGGTCATTCGATTACTTCAATTATTATCGACGATTACTTCGATAAT
TGAATTTATCGATTAGTATCGTCTGGAATAGCCTTTGATGGGGCATTTGA
TACTATCAACtgttctaacttgggacgattggttgaaacatgggactggt
tgacaGCAAATTTGTTtagataactccaccaagtttatcaatcatacttc
ttcgttcctctttGAGTGCACAGTACACTCGCGTACTACagatctttttc
aaatttcaatttaaaagcctactcggtgcgaaagagaaatcgtgtatttt
ttaatacgccgttcattaattcaaatcaaatgactttggatgttcggtga
aatggtggctgaattgctgtcccatgttttgtcacaTAGTCCCatgttag
agcagttgacggtatattcAATGATTAATCGATGCTGTCAAAGTacaaaa
gaacccggtttctaGACTAAGAATCTTGGTGCTTTCCCGGAATCATTACC
ACTTTTTTTTCCGGGTATACTGCAAAGGTGACTTCAATATTgtagaatgg
aaaaataaagagaTAAATACCccgtaaatgaaaaaaatgaggaaaaaatc
atttgtaaagaattttttcaaaaataatggaTTACTGGTACAAAGTGACa
gtaactaactttttttcaaaaaaaggaccaccacttagtaccctGGTACA
TCCAATTtgtaggtataaacttatttttgTAACCGTTCTGCTCGCTATAA
TATAGCGAACCTAATGGTTCGCTATATGAACCTGGTTGAACCTAATTggt
aaaaaaaactgaaatatttGTAATAATTATCGGAGCCGCGAACTCATTCA
AAACAATTATACGCAATTATCTCATTTAGCCGCGGCTTTTTTATCTTAGA
AAGAGTAACCACGGTAAAACATAtctgaataaaaaaaacaatcaaatcaa
atcctTGATCCAATAAGACCAAAATTGACCTTTCTCCAAGCTATTAACAA
TTGCCTGTGTGTTATTTAAACTTTAAAGCTTTTGCAATCCTTGTAGtgtt
gttttcattcaaatttgcTCGTAATGTTCTTTAACAACTCATTAAATATC
CATTAAAATGCTCCATATGTAAATCATTAGGTATGTTTCGACTGATGAGT
CTCATGGGTATTGTTGATGAAACGGCCCCATATCGAAATGCATCCTTTTT
ATCACTTAATTTGGTAGAAAAGCATGTTCAATTCATGAGAGTAGTTGGTA
TGACGAGTTGCTTTGAAATAAAGAAGTGCATATgctattcttaatatttt
gcaaAATCATGTTGATTGAAAACAAAGTCCCCTTTCAAGCTCTCTTTTTT
GATCCTTGCAAACTTTTTCAGTTCGTGATTGAgagagtgatatatttttt
tacttctGTTTAGTTGATATAAAAGGTCTGCCAAACACATCACCGGAGAG
CCTTTAAATTGTGAGCTTccctttaaactttaaaaaggATAGAAAGAGAA
CGAAGAGTGTATTCTCCTCTCGCTGAGCTAATGGTTTGTTTGCTCTTTCC
ATTGTTGGTCAATTACCTTACAAATGGTTTATGTAAATCTAATAGCGAGA
GATTGATCTCTTTCGTGTTCTCCCGTTCTCtttctcttcaaaaacatgta
aaaaaacTAGCAAATTGACACTCAAACTGCTACTCTGGATTCTAAGAGAT
TCAACTTCCTGTAAAatgcaaagaaaagaaaaacatgacaGTAAAGATTT
TTGCTAAAGTAGCGATATAAACTTTCAGATTAAAAACATTTCTGTAGAGC
TGTATTTTTAGGAAGAAAACAGCtctaaaacgcttgaaattgagcttttt
ttattGCAGTTTTTTGTTgaaccgccatctttgtttatgcAAAGATGCCA
TTTTTAAAGGGACCTTTTACGAATCCTGGATTAATACGGTTAATAAACAA
TGTTCTAAATgttttcgccaacaaaaatcataaaaaagaaataagtttat
acctaagcTAACCAGAGCTAACCAATTTCATCAAGCAAAACCTTAAAAGG
TTTGTAATTTTGGAGCTCATTaaccaaatttgatgttttatacGAATCCC
TGTCAGGATTTGATGTCATCAGGTGATTAATTCTGTCTAATTCTGCTATA
GCGACTATCTGGTATGCAAAGTAGTtggagtgatttttttaaacagcttt
ttcagaaggttttatttataaacatttaaaaagacCAGTTCGTTGCTATG
GCAAAATTAGGCAAGGTATGTAGACACTACACAAAGTTACCGTACTAAAA
TTTGGCAGGATTCTTTTAgaactgtttttctaataaaaactTTCTCTCAG
GCCAGTTTTCAGATGTTGGAAAAAGGAAAGGTTTTGCCTGGGATGGAGAG
TAAACAGCAGGAGGGCTGACCTAAAATGGGTCCAGGGCAAGAAACTCCAG
AATCCCTAGAAATTGTTATTCAATAGAGTTTAAGTTATCATTTTTGTAGG
TATGGCCTCGCTTCACTGAACAGGTGGTAAATTAGGCTGAAAACAAATCA
ACTTTAGCTACCGTATACTGAAATTACTGACATTTAAAGACAAAGAGATG
GAAGGTGCTGACGCTTCTCACCAATCCTAAATGCTgcccttgaaactttt
tggacctacctccgggtaccccggtggaggtcctataaattaacccatgt
ccgtccgttcgtccgtctgttaccagcttttctcaggatttgctcattag
tttttttattatttttggcacaatgatgcaaaatggcaatgcctaaaatg
tgacggagcccgattttcgaaaaaaaatatatttgggtaaatttgggcca
aaaactacctaaaaatagggttttttggactttgtgcaaaatcctgtcat
tacttttttctaattttttgttcaaagatggagggcaagattctctaaag
aatggctgaagtgtttttcccggaaaattcttattcgccttaaaaaacgg
attttcgtatttttgggaaattccctttagacaaataagaaaatatagct
tttctcaatgttgactcgttatttctttctgattttttgcacaatgatgc
aaaatggcaatgcctaaaatgtgacgaagctTGATTTTCgaacaacattt
ttttccggccgaaaatgctggacaacgccgtttttctggattttcattgg
atttttttcttataattggttgttttttcattcaaaaacatttttaatag
cCATGCctaccatcaagcatgtttcaattttcaaaaacttgatctttgaa
gccggaactattgaAAAATCgtcggaacaacctattttcgccagaaagac
agtatttcttgaatttctcgggctgtacttaatatttttttatgaaattt
tgcgcaCGGATGAAAgactttctatttctattttccctactcccttccct
cttcccccatcaacaatcaatgataaaatttaatgtgttatgcattttcg
caaaACGCTATAAATcatctgactgattgttttcatttttctccttattg
ccttattatctagctttcatcatcaggtaggtctttcagcatgttgcttg
ttgaattttaaatttatgCCCTTGCCTGAGGGCACTAACACAACCTTTCC
TGCTCTTGCATTTGAGAAAAGTGAAGGGACCTGAAAACCCTAAGAAAACT
CATGCAAAGAACAGTTTTGTTCAACCCCTAAAAGCCAAACAATTGAGAGC
AATAAAAAATGCTTGTACAACTTTTTATCATATTGCGTGAAAGGTGTACT
ATTAGACCtatttgaataattaaaaactatgATGATTAAAAATTTTATGA
TGCTGTGGCTGTTGTCAGTGTTAATGACACTCAAGGTAGGATATTATAAT
TACATTCTATTAACTTCATGCTGGTATTACTcccaaacttttttaattta
ccTCTTTTTCAGTCGTCATGCAGCAGATGCCTTCAGGGTCAACGTTATAC
ATGCAAGAGGACAGATTCGATCACCTGTAACACACATAGCTGGCACAAGC
TTTTTTCACGTCAAAAGAGGGAATGTATGGATTGCTGCAGTCTCAAAACA
GAACTGCAATGCTGCACTTGTATtcgaatttttattcaaaactgTAGAAG
TTATGGCCAATTATTTTGGAAAAGTCTCggaagaaaatgttaaaaataat
tttgtattgATTTATGAACTTTTAGATGGTAAGTTTGTTTTAATTCTATC
TGGAGAGCAAGCTAGTCACCAGAAAAGTAAAGAATAAATGTGATTGCTCA
AGCAAATTTAAGTTCATGAAAAGTCGAAATACCTCCTTTTTATTTTACCG
GTCTGGCACCAACTTTCTTGAACAGTATTGAAGGCTAATAAATGGAAGAA
AGCAGACCTTCTAGCTCTATAAATAGTGCTAGCcacttttaatttgtttt
tggtTGACAGCATCATTCATAGCATCACTTTCAATCACGCAGCCAAGTTG
TTAATAAATATTAGCTCCAAATTGTTATCGAAATCACAAGATCAATTTAC
TGGTTCAACAATCTTCCTCTAGCCAATTGCAAAAGATACTTTCAAAAGTT
ACCCTCTCTATATTTTACCACTTTTCAGTCGATCTGTCTGATACGATCTT
TCAGGTACTTAGAATTGTTCGGGGAGTCACAAATAAGACCTTATTTTAAC
AGCTAACCCTTTTCCTCAGCTCATTACCTGTGGATGTGTTCTTTGTCAGA
TAAAGCTGCAAGTTTCCAGTCCAAACTATAGCTAAAGACTCAATGATCTA
AACAGATATTTGCATTCATGAGATACTTAACAGATTGAATTACACAAATT
AGAATTAGGTTCTTCCTGCTACCAAACATTCTTCTGAGCTCATAGTCAGG
CAAATTGTACTTATTTTCAATCATTTATTGACTTATGATTCTGTACTTTG
gtcttttattttcataatacataatataatatacacagaattttgtttct
ttttacaGAAATTAACGATTTTGGGTACCCTCAAAAGACAGATGTAGGAA
TTTTAAAGACTTTTATAACACAACAAGGAATTCGCTCACAGGTATGACGA
TGTCTACTATGTAAAATCAATATTCTCTGAAGGGCCTAACCAGTAATTTT
AAAGGGACATCTAATTACTTGTgaaatttataaaatcaaaCAATGTCATT
GTGAACGGTTTCAAAACATTCTGTAGACGTTGAAAGACACGTGGTTGTTC
GtgtaatgtttacattttacttatGCCTCTTTAATTTTGAACACCAATAA
TTAATTGATACCAACCCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAACGATTTTGGGTACCCTCAAAAGACAGATGTAGGAATTTT
AAAGACTTTTATAACACAACAAGGAATTCGCTCACAGGTATGACGATGTC
TACTATGTAAAATCAATATTCTCTGAAGGGCCTAACCAGTAATTTTAAAG
GGACATCTAATTACTTGTGAAATTTATAAAATCACTGCAAGCAAGGGGCT
GTGAAATCAAACAATGTCATTTGTGAACAGTTTCAAAACATTCTGTAGAC
GTTGAAAGACACGTGGTTGTTCGtgtaatgtttacattttacttatGCCT
CTTTAATTTTGAACACCAATAATTAATTGATACCAACCCTTTTTTATGAA
TTATTCTGTGACAATTTATTTGAACTTTGAATTGATTTTCAGACGAGAGA
AGAACAAGCACAAATCACAAGTCAAGTTACAGGACAAATTGGTTGGAGGA
GAGAAGGAATTAAATATAGACGGAATGAATTATTTCTCGATGTTTTGGAA
TCAGCGAATTTACTGATGTCTCCTCAAGGTAAGTACTCGACTCAAACTTT
ATTTTGGATTATAGTCAGACTAGTTAACTTTTAGATATTCAAAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002816TCONS_00002816Clytia hemisphaericatranscript
TCONS_00002817TCONS_00002817Clytia hemisphaericatranscript
TCONS_00002818TCONS_00002818Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002816-proteinTCONS_00002816-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:662190..670084 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
285.46	271.71	328.19	318.92	284.94	214.76	269.76	283.68	250.42	263.84	209.12	199.22	213.54	237.27	201.72	206.07	274.37	274.46	136.94	135.7	173.62	165	130.92	164.81	126.79	130.45	211.44	177.09	193.35	181.55