XLOC_001616 (gene) - C. hemisphaerica

Overview
NameXLOC_001616
Unique NameXLOC_001616
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000024:72036..76084+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001616 ID=XLOC_001616|Name=XLOC_001616|organism=Clytia hemisphaerica|type=gene|length=4049bp|location=Sequence derived from alignment at sc0000024:72036..76084+ (Clytia hemisphaerica)
CAGATGTCGCAGAAACAATAACATCAAAGAAGTTAGTGCATAGAACTTGG
ATAAAGTGAAAGATTTcttattaagtttttttttatattttgctcGCTTT
TCATTACGGAGCAGAAGCAAGCTTAATTAACCAAACTTTATGAATATATT
TTTCGAGCTGAAGCGCAAAAAATTAGTTGCACGCTAAAAGGTGACTTTTG
ACTAGACAAATCCAGCAACAGTTTTCAAAGACTTTATATCAAGATGTGGT
TACAGATTGCTTTCGCCGCTATCATTGTCTCGTTCACTGCATTCTATNTC
TCAAAGACTTATTATCGAAATGTGGCTACAGATTGCTTTAGCTGCTATCA
TCGTCTCGTTCACTGCATTCTACTTGTACATGAAACATAAAATGTCTTAC
TGGAAGCGGCGAGGGATACCGGAAGATAAAGGATATTTCCCCTTCGGTAG
CAAACATGCTTGGGATCTTTTACAAAGGAAATTGCCGTTCATGCATATGA
CAAATTATGCATATGAGACACACCCTGGTGAAAAGGTCGTTGGAACTTAT
GATATGTTTGGAAGCCCAGCTCTGGTTATTCGTGATCCTGACATTGCTAA
ATTAATCTTGGTCaaagattttgataatttcatGGACCGTAAACCATTTC
ATTTTAACATGTATGGTCCTAAAAGTAAGAATAACAGATACATGCCATAC
ATGTTGTTAGAGCTTCGTGGCCAGAAATGGAAGAATGTAAGATCGTCATT
GACACCTATTTTCACTAGCGGCAAACTGAAGAATATGATTCCACTCATAC
ATAAAGTTGCTGATAACTGTGAAACATACTTAGACAAAAATATTGGTGTT
GAATTTGAGGCGAAGGAGTTGTTAAAGGGATACGCTTTGGATGTAATCAT
TTCAACCGGATTTGGTTATGAGAACGACACTATAAATAATCcagaaaata
tcttcaaaaagcATGCTGATGTGATTAAAGGGAAAACGTTCAGTCTGAAA
TTGATCATTGCTATTCTTATGTTCATGGCGTGCCCCAGGCTTCTCCGGTG
GTTGGATTTGTCcatattcaataaaaactcgGAAGATTTCTTTGCAGCAC
TCATTGTTAAAACTATCAAGGTGAGATTTTTCTTGGGTGATTGCTTcttt
atacccctgtctcgcagcctcactggaacttttttcctctcCTCGGTGGG
GATAGTAACATTCCTTTTGAATTTcggatggggatagaaattctattgtt
ccaagattaaaaaatccagtggggatggttttggagtacaatttttaaac
attgaatttcgaatggggatgaaatcaaaatcattttcccagtggggctg
aaattccattgtattttcccaccgaggacgaaatttttgctaaactttcc
agtggggctggggtcccagtggttctgtgacacaggggtatttTTTTGTA
GACAGTCTATTTTATTTTCAGCTATTATGGTATTTGACctaaaaataaat
atggaaGTGAGACTTTTAGATCCtgaatttctattttcaatACACCATCC
AGTGATTCGTTAAACGGTCGCGCATGTGCTCGTTGTTGCTCTCCGCCGGT
CTTGAGATGTAAACAAACCTGTTTACACCTGCATTTTAGggaagttgttt
tttttatttctgttgAACAGACGGGATGGTATTGGCTAAGCGGCTACTAG
CttcaaatgaaattattttgaattctcTTTCAGGAGCGCAAAGAATGTGG
ACAGAGAAGAAACGATTTGATAGATGTCTGTGTTGATATTTTGGAGAAAG
AACGAAAAGAGAATGAGAAAAGTGTAGAAGATGAAAAAGAggcaaaaaga
agaaattacGAAATGGAAAAAATAATCATCGCTAATTCATTGATCATGTT
TCTTGCAGGTGACCAGCGAATTATTTCACTAAGTTCTGCTAAATCTTTTA
TTAATCTATTTTGCTACCTTTAAAGGCCGGCCTCCACTTTCACGCGAAAT
GAGCGAAAACGCCGTATTCTTTTCTGTAGGTAAAAACGATTGATAAAAAG
ATTTCGATCATTTTCGCGTGAAAGTGGAGGCCCGCGAAATAAATCTCAAG
GTAGTTAGTATTTTTTCACATGAAAACACCTAATAGCATGAAGatttaat
ttcataatttttggaaattttaaaatcccgCTAAAGCGGAATAATCAGGG
ATCTTTCTGCaataaatttcctaaaattgtGGTTGAGAGTTGGTTGTAAC
AAGAGTACCCCAGATTAATTAACagggaaattttttcaatttggaAAGAT
AATGGTGTTGATATTGATACTCCATCCAGGAGGTACTATGAAGGGTATGT
GTGGATGGGACCTCAGaaaactgacccttagagagactaaatttttagtg
aaaaagttccccttagagagacttttttgaatgaGAAATTTTCTTCGACT
TTTGAAACATTTCTTTACCCTTAGAGTGACTTTTCTTGAggaattttctt
cgatttttgaaaattgtcttACCCTCAGAGAGacctttttacaatttttt
ctctcgaaatcaaaacaagttcttaaaaatcgtgaattttccgaccctta
gaggtaaaaaatttctgttttttttaacACCCTTAGAGAAACTTTTGGAG
CGAGGAAAAAACCGACCCTCATTGTCCGCACATATaaagcacccattttt
gcccgGGTACTGAATCAATTTAAAGCCAGTTAAAACTGTAAACCATAAAA
TCAAACCTTTTTGGTTATCGTTTAAAATAATTTCATCATTTCATTTAATA
GGATTTGATACAGTCTCAAGCACTTCATCACTGATGATGTATTTCTTGGC
AAAGCATCAAGATTGCCAAGAAAGACTCTACCAAGAAGTTCAAGAAGCTA
TCGAATCCACCGGCTCCACAAACTTCGATTACGCTACCATTATGAATATG
CCTTATAtggaaaaattcttccaagaaacCCTAAGAAAGTATCCTTTTGT
GCATTTAGAAAGGTGTTCCAAGGAGGAATATAAGATCCCTGACACTGATA
TAGTGATCCCAAAAGGTATTTTTGTTCGATATGCGGCCACCGCTGTggtg
aaagatgaaaaatatttccCCAATCCTGAAGTGTTCGATCCTGAGAATTA
CAGTGCTGAAAAGAAAGTTGACAGACACCCGTTTGTCTCTGGTGGCTTTG
GACATGGACCGAGGAATTGTATTGCACAGCGATTCGCGACAATGGAAGTC
AAAATTGTGATTGCACGGTTGTTGAGCAAATATAAGATTGCACCATGTTC
GAAAACTGTGGATGAATTGATTCCAGATCCCAGGTCAAGAAGTGGGCAAC
CGAAAGGGGATATTTGGGTTACTGTTGAGAAAAGGTGAAAAAATCTTCAT
ATAGGATGGcaataaaaaatcttttgcaAGGAAAATATGATTAGAACATT
ACTGATTTTAAATGTGAAAACTTTAGAACAAATATAGAACAGCCTGAGCT
GCAGACTAACAAATTTACTGATGTCGATtgagctattccagaaatagtct
atatctcctatgttgaggaggtgtgacgtccaggatggtctggaaaataa
aaaatccagggtagtcagaaaaatcgggttataaatccagggtggtccaa
agaaacgagagaaaaaaatccagggggtcaccttttaaaaaaaatctcct
caacatagggggaaaatttttttctggaatagcccatttttGTTGCATCT
CAACATAAATTCAAAAAGGTCACAATACGGTAGactgtttctttttttat
tgtaaagctaaatgatcaaataaatcttttaatttttgaataaaatttta
gaaatattatttctttattgtaaataaattaaaatcatggttattaattt
tcacaatttttgcgatttttggcatttttagcggaagttaatatttttca
aaattcttaacagggtaattcgaaaaaatcgtgaaaaaaatctgaaaaag
tctGATTATCTATCAAACTTcaaaatcgtaataaatatataaaattttc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002944TCONS_00002944Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002944-proteinTCONS_00002944-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:72036..76084 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.64	3.52	2.46	3.04	0.45	0.38	1.32	1.4	5.6	4.08	9.59	4.8	8.13	6.13	12.59	16.21	4.84	4.41	6.13	4.28	3.74	3.5	4.45	4.8	6.11	8.68	20.66	15.25	81.61	58.36