XLOC_001620 (gene) - C. hemisphaerica

Overview
NameXLOC_001620
Unique NameXLOC_001620
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000024:244544..254059+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001620 ID=XLOC_001620|Name=XLOC_001620|organism=Clytia hemisphaerica|type=gene|length=9516bp|location=Sequence derived from alignment at sc0000024:244544..254059+ (Clytia hemisphaerica)
aaaaagattaaaaaaataaggaaagtATCAAAATAATGAGAAAAGTTTTG
CAACACATGAAATTTCGTAAATCTTTTCAACCACTGGTTACGTGCGTCAA
CAACAGCAAGTTATATATATGTATTCAAAATTACCATCTATTGATTGATT
GACGAAAACGCACCTGATGCCCACACTAATGAATGGTTCACAAAGTATTT
GCGAAAGGTAAAAGGGTCTGTAGtgtatttttaatttgtttcacgttgtt
ttcttccaaaatgcacttttgaaaagaaaaaaaaaccaaatTGTCGAAAC
GACGTCGCCAGAAAGCCATGATTCAAAAGCAGCTTTCATCTTCAagattt
catgctctttccaatAGTAACTACGAGAGTCCCGGAGATCTCTTAGTTCC
GGAGATTTAgcccgtcaaaattttttcagctagtggggacaaaaataatt
gactgaaactcgatggggatttgttttcaagtcagaaaaatcagtggggg
atgggaaaaatagtaaatattttgcagtgaggaatggtttatttgatcat
tttcagtGGGGAAAGAAATTAGAGGATAGTTTTCCACCGTGGCcgatatt
ttggctaatttttccggtgggaaggggttccagtgggtctgtgagaaagg
ggatGTCTAATCTCCAGTTTAAACAAACTTCTTCAAAGTGAAAAGAGAGA
ACAAGTTAAAATTTAAGTCGGTGGAATCTTAGTTCGGGAAATGAAGTCTT
ATGAAAAACGACGGTACGCTGCTTTTAAAGCAAATTGATGATAATCCATT
CTTTTGACTTTTGCAGTAGGTTAGTCTTGCGACTCCTGCATTAaaaatac
gcatgcgtaatttgtcgttttttttaaCCACGTGtaattaattcccgtga
taacaagtgatacttttatagaCCTACCCTGGGGGgtcactcatatgatc
tggcctacgtcatgtgccgcgcttaagggtgggttttttctgcatcccaa
aatgcactttaagggtgtgtttctgtgagattgcactgtaagggtcgaat
tttaaaacaaattcaaaataattgttaaaaagaaaggtttttacttctca
tttgtttgaaaaagtttctattgtttgataattacagctgacaagaataa
ttttctcagtttttctttgaaacagaaaatttcccaagcttctactcttc
acgcagatttactgctaagaaatatagtgcactataagggttgggtaaat
caagagaaaatgcactgaaagggtaccatTTCacccatattgaactgcac
tgtaagggtacgattttgaaaagcagattttgcgcggcacataccgtcgt
ttcaaaatcgagtgcccccccacGGGGgactacctggttatgcatttaac
acatatatattTGATAATTACGTAAgcatgaccattaaacaatcgttcag
aacacaaatagtgacgatttattaaaattagtcgtttgtttcttataaaa
aaaacgtttagaaaccaaaatttcatgctcttgaaaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtattcttatagataaagatg
cgttttttgagctgaaaatttttacctactttcatgcaaaaaatcagaaa
aaaacaacgatccaatatttcacagtccaaaaaaccctttttaaccgttt
tttggcccaaatttgcccaaaaacattttttttcgaaaatcgggctccgt
cacatggccaccaccattttgcacctttgtaccaaaaatcaaatgattcc
tatgattcaatctcgagaaaagctggtaacgaacggacggacggacagag
gtgaatttataggacctccaccccaccggggtaggtctaAAAAAAGAGGA
ATGAATCTTTAGGAGTGGTACGGTCATTTTAGGTCGGGGTTCTGGAcggt
aaaatatgaaatttgtcgttctttatgaaacttgtcgttctttttgtcta
tttttagtaatgcaggatttgttTGATAGGGGTTCTATAACCATTAGCAT
TTAAAAGTTGTTTAATTAAAAGTCGTAAGATAATGGGAATAGATTAGAAC
CACAATGATTGCTTATGATTTATCAtcccaattttattttttgtaaaggA
AGTATAAACATAGGAGGAGTCTCCATTACATTGATTCACTGATGTTCTTT
CCGATTTGAGTTGATAAAATTAAATtgagaaagttgtttttttctggaaa
aaaaacggtttttgcACCATGgaaatacagttgacactctctaactCGAC
GCTCTAcgattcgatacgctccattattcgataagatttaaagttccagT
CGTCATGAATTTCCCATAAACGACGCACTATTATtagataagctccctta
ttcgataaaaatcctattccccttgaaaatcgaattagagagcatcaact
gtatgcTGATTAGAGtctttgaagtagctcactccctttgaaactttttt
gacgtTCACTGTTCGGTGCGTCAGACTTTACACTGATACTGGTCTAGGCT
CTGTTGTATCGGGTGTTTTAAGTATCTTAATTATCAGGAGATTGTCCTAG
TAGCAAAGTTTATAGCTCTGTCTCATTGAGACTGTATGTAAAGAGTTAGA
GACATAAAAGGACGTtcaaacaatgttgtgtgccagctgggatgtgtttc
aaaacaatgaagtaataattttcaaaatatcaaggTATTATCGATCTTAT
TGCATCAAACTCTaaactcaaataaaaaataccttAACAGAATACCTATT
ATCataatacgtataatacatTTTTAATTATACAATACATGATTATCATC
CACCTTCATATTTGAAATCCACCTTATAGGAGCAAAACAATCAagtaata
atttttaaaatatcaaGGTATTATCGATCTTATTGCAACAAAATCTAAAC
TCAAACAGAATACCTATTATCGTAATACGtataatacgtataatacatTT
TTAATTATACATGATTATCATCCACCTTATATGAGCCTAATACCACTCTT
TGCAAGCTATAAACAAAAGGAAAAATCCCACTTAAGGAACGCCTCCTAGC
ATTAGGGTGCCCTGTATGATTTTTAAACcattttcttctattttctaAAT
ACCATCCCACCATACATATAAACTTCTGTTAAAAAATTGACAACCTTGAG
ATATTAGTCACATTGAAATTCTCATTTATTTCCAAACTAGTTTAAGAGGT
AGAAGGTAGAAGGTTGTAGTTGTAgtcatttggaaattttcaaggGACTT
CAAGATGAGATCgattttgtttttggtttttataGCTCGCTTTGGTAAGT
AAAATATAGCTTTATTATCAGTGATCTAAGTTATTCCATCTCAGGGATAT
gtataaaattagatttttctgTCTCAAAACTCAGtaagattttaagaatt
ttagcTAATTTTGGGGGTGAATTGTGGTCTATGTTCTACTTTtagcaaag
atggcgcattacTTTGCTTCGCCtgccgttgcttgggaaatacagagtag
ctctatctcgtattttatataaagtaaacgTTAAAAACACAGTTATGTAT
GCGACGTTTCGATGGTTGTCTTTATCAAGTAGTAAAATCgtagcccgaaa
ggctagagtagaatctcttaATCTtttccaggcaagaaaaagtgaagcca
cttatttcccatccagaacgcacctagaacgcgccgtaataatgacgacg
gattgtatctagcggtttctttgttttcgaggaCTCCATTTTTTATAAAG
TGATAGATgtgatagattttagtttcaatccggcgttagTGTATAAACCA
CGTGCCCGCACTGGATGGGAAatatgtactcttaggttccaaataaacgg
ccccccccccgcttgttaatttttcgaaaattttccaacccccccggacc
ttattaggacccccccgtttattaatctctaagaatattttcagctgtca
aagagaaggccccttattttgctctaaatagtctgattttagcctatttt
taccttatttttgggtttcagaagtacaatttccaacccccccggcccTT
ATTAgggcccccccgtttattaatctctaagaatattttcagctgtcaaa
gagaaggccccttattttgctctaaatagtctgattttagcctattttta
ccttatttttgggtttcagaagtacaatttccaacccccccggcaattag
gccccccccccgtttattaaaatctagaaaattttccaacccccccccgt
ttatttggaacctaagttCTCGcacttcgggcttggaagtcaatgatcAT
AGTATTATCATGtctttataatattttatattttgttttcactAGTGTAT
TGCAAGCCACCACAATTTGAGAATCCTGTGATATACGAGTACGAAGAAGA
TAAAGTATACAGTGCCAACGGTCAAAGTTATAATGATGAGAAACCCTTTG
GTTATCTTCGAGCTGTTTTACCACATCCACCCAATCATGACCGACACAAT
CCTGTTTTTGAACTTGAAGACCTCCAAGATCGACAAATTGAGATGAGAGT
AGGTTTTTATCCCAATGAGTTTCAAGGTCGTCAAGCGAccatagtgcagt
ggtagagcatccggctacggttcgcaaagttgtgggttcaaccctcagcc
gggtcataccaaagagttccaaaatggtacttgatgcctctctgcttgat
gttcagcaattaagagaaggatcaagggtatgtgtccagggagaaagagt
ggcgccctcatcccctaccttcgggtcgcctccgaatGCGGTCACATACT
TACTTCAAGGTCGAATGCTAGCGGCAAAACATCAACCTTGATCAATCAAG
AAAAAGTGTAGTTCGGATAACGGATTGAATCTAACCAtgcattcttttgt
ttttgtgatttacattttcaaaaacccTGGCCGTAAATGTTACTTCCAAT
CGAGCATTTGCatgaaatgggcttttccagaaaaaatttgaatatggggg
tggataatgtaacattttttgaaatttacccccggacatagTAAAATTTG
ACCCctcggacaagcatcagttgaccccctggacataaCTCTCAAGCcga
gcaaaattaccccaaaagagagcaagtttaccccctcCCCGGGACACTAT
CCTCCATCCCCATGTACGGATATTCTCTGGAAGAGCCCAAACCACGCGGG
ATGCGTAACACGTGGGAAAGTTTgcagtggcttcaaatcctaccaaggag
atccAACTTTAGTGGTCTCTGGGtatatattttaaaaaagcaaaataatA
CGTTCTCTACTATAGACGCTTGGGTACTTAGAAGGCCgggaaaattaagt
ttttagaCCGCAGctgttaaaattttaaatcccaaatttggcaaaaactc
TAAGGAAAATTAACGAATTTAGCAGAAAATAAGGCTGATTCGGGAAGTTT
TAATCAAGGCGAAAATTTTAGATTCTCAGCTCGCGAAAAAAGCCCTTGTA
AAAATCAATTCACTAAAGGTACACTTGCActgatgaataatttttttatc
tttcagCTTGAAACTTCACTATCGCAAAAGGGAGCAACAATTTGGtgagt
tttgaaataaaaagagcTGTTATTCAGAGCTTTCTAAGTGGCTAAGTAGT
TTAGCTGACAAGGTGTGCATAATACTCCTTTGACTAACTAAATTGACATT
TTCATCCCacaaatgacatttttttggccaaaagcggAGATATTTTCCCT
TCACTTGCCTACTAGACCTTTTCATGaatacgtcacaaacatcacttgcc
tcgtattcaaacaattaccatggtggttatgtctcttgagacattaaatg
atttttatgaataaaaagtagttttaagataatccgctgggagttaatca
tcttggcaataatttcaaaacgaggcaagtgatgttcgtaacatAATTTA
GGAAAAGGCCTATTGACTACTAAATTGACATATTTTAATCCCACAAGTGA
TGCCTTTTCGGCCAAAGGCGGAGAAATTTTCTCTTCACTCGACTACTTCT
TAAACAATAACGATCAGTTTGATATGTGGCAAAATTCCAGAGATACAAag
atctgtcaaaaataactggaattccacgGGGGTAGCTTTTTagatcctac
taaaattcagaggggtttaaacctgaaattgcctggaatttcAGGgagtt
acagcatttccagccacaacaGGGGTGGGTATACGGtttctttctggaaa
agcccattattaCACAGAGTAATTCAAGGATATTTTTATTATAGTATTCG
AGATAATGACGAAGGGCCAGACATTTGCTCACAGGTAAAATGTTAACTCT
TGCCTGGCTAAGTATCCAAACTCAACACAACAGTTGAGTCTCCTGAGCTG
GAACCTTTATTACTCGAATTTCTCCTTAATTCCAACAAATTTTCTTGCCC
CTTCATTTgataatgccttataaaccttactccataactcgaacaagttt
aaGTTCCccgtgtgttcgagttatagagacttcaCTACCGCGCAATTAGC
CGTACAAAGTGCTTTATAGCCTGGTGTACCTAGTACGTGCTTAACCTATG
GTTAAGTAATTCTTATTTGAGTGCAATAAATTAAGAGTCGTTAGGCCGGT
TGGCAGACGCCTGGCTTGTCTAGTTAACCAAATCTCAACTAGTAAAAACA
ACCCTAAAAAGGTCGGTGTTttagaaaagttgcataatttttttttcatc
tcagcttcgaggtatgcttagcatagggggggggggtactcaaggtaaat
gacctaccagacgttcggcccttaagggtaggttttcatagttcagctag
tgcactgtaagggtagcaCAGGAAAAAATCGTCAAATCACACTCGTGTGA
AAACTGATCTCCCACAGTGGGATTCGGTTCGTTTTTCACACGGGTGGGAA
AAGGTAATTATAGATATTTTGATAGATATTTTGGcgagatattttgaaaa
agtgcactgtaagggtatgatttttcatggaaattcactgcactgtaagg
gtccgattttagaagccaaattttgggccgaacgtatggtcgttttcaga
tcgagtgccccccccggggtatgcttataaacgttatgcttacaaaaaaa
gagtttattatacttaatatttttttatgttaCGGATAGGGTTCAATCAA
CCAGTGTTATATGGCAtcgaaatcaaaattgaaatttgaaatttactgTA
TGGAAAGTTGCCAATCGAGTGATGTCGAACTGTTTGTACGATTCGTCCCC
AGTAAAAAGAACGGTAAGATTCTGAaacacagatttctgtaaagctaAAT
CATCcgagcttctaattttcactttcattttcaagccccagcaaaagtga
tgacgtcacatggagaccagcaaaatggtcaaatttttatcaccactcgt
ttttgtaatcttatagacctaattgatcatttaaaaagaTTAGTTTGCTT
TAAACaagtctgtgcacacgaagaacattgtagctctcactaaagggcta
gatgtcgtactttaagccatcacaggcaaaaaaaaaatgaatatcgcaag
aaatatagttgttattgtttttgaaaatccgcgaatcagaaaaaaaaaat
gaatatcgcaagaaatatagttgctattgtttttgaaaatccgcgaagct
tctgattggtcaggcgctgaaattctattgtaatgtcacgtgacttagtt
aggatttcctacctgccacggcacacttttcagccaaagcacgacatcta
gccgtcttcgggctttataaatctatgtgcTGAAATGACATGAGCTTGTA
TATTCACCGGAGGTAGTCTAGACTGGTACGCCACTCGGGCTTGAATGGAG
TGGGAAAAGTAAAGTTAGGATATAGGTAAGAATAGGAAAAGAATTTATCG
GCGGGAGGGGCTGAAAACTTACAGTCTGTAAATCAGCACCTTTAAAGTTT
ATATTTCAATTGTCTATCCATTCAtgattacacccctgtctcacagcccc
tgtggaactttttttctcagtgggaTTAAAATTCCTATTggaatcccaat
ggggatagagcTTCGATCATCGTCTGTTTTTAGCCAAGTTCACGTTTTTA
AGAttcaaaattttgctcaaaGTTTATcgtttcaaaaatattataagGTT
TATAAATTCAGTGTCagtggttttgaagtgcaatttttaaacattgaatt
tcgaatgggaatgaaataaaagttaattaccAATTGGGAGCTGAAAttct
aaggtattttcccaccggggatgaCATTTTTGTCAATCCTTGAAGTGGGG
CTGGGCTCCCAGCGGGTCTGCCACACAGAGGTATATGATTAAATAACAGA
ATCAATCATCTTATTTATTTAGCCAATGATATGTGGTGTACAATGAGAGA
AACAGGTGGTTACCCTAGTGAGCTTATTGATGGGCCGCCCCTCGCTCAAA
TTGGTAAAGCGCCAGTTACGCCCGCACCAAGACGTGAGGGCGGGGATGGT
ACTGATTCCAGTGGTTCACATGGGCGTATGATTTATCCAGCATTGACAGT
AATGATCggaagtttgtttgttttctttgcTTTGTAGACCATTTGACTAG
CTATATTTTGTAACTAAGATTTTCTTTACGTTCGCTTGCACAAGACTTTt
agatggccaaaatattaagaaaaaggttATGAGCGTTTTGAGGCTTTACT
GATtctaaaacatccaattttttctaaatgaacaaaaaatactcaaaaaa
tggtgaaattaataagaatatttttagacttaaaactcaaaaagttaaga
acatcccaaaggcttcaaaaaaaaattaggtgtTATTATAAAAACCGTGT
TCTTATTACTAGCCGTAACTTGACTTGCATTAAAATCTGTAACGTTCACT
CGCTAATAAAGAACTAAGTCGACGTTTATCTTATTTTCATCTTTACCTAA
GTATacttgtttcaatttttaacttttccGTGCATATATTATATATCATA
TCTTGTCAAAGTAAAACCAATTTTCTCCGTCTATGCGAGAGTGTATACAA
TATAGCGTAGTCAAGAAAAACACATCATCTTTCCATGAATATTTCGGCCA
ACTGGccattttcaacattatatcaTATCATTGTTTCCTTTTTGCTATAA
TTTCGTGTATATTTTAGGCGAATTtcagaataaataaatttaacTTTCCG
TTACTGTTTTCAAGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002948TCONS_00002948Clytia hemisphaericatranscript
TCONS_00002949TCONS_00002949Clytia hemisphaericatranscript
TCONS_00002950TCONS_00002950Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002950-proteinTCONS_00002950-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:244544..254059 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51	0.58	0.2	0.13	2.41	2.58	0.27	0.43	0.23	0.22	0.37	0.38	53.84	49.47	0.42	0.47	0.22	0.25	72.88	73.54	0.09	0.21	0.14	0.19	3.32	2.09	0.41	0.3	0.1	0.17