XLOC_001638 (gene) - C. hemisphaerica

Overview
NameXLOC_001638
Unique NameXLOC_001638
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000024:160360..169041-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001638 ID=XLOC_001638|Name=XLOC_001638|organism=Clytia hemisphaerica|type=gene|length=8682bp|location=Sequence derived from alignment at sc0000024:160360..169041- (Clytia hemisphaerica)
AGAGAATTCAGCTAAAATAAATCAAAATCATTTATAAATTTATAAATCAT
GCATAAAGAACATTGACAAAAAGCAAAAAATGACAGCAACGGACAAAACA
ACCATTTTGGTTCTTTTTTTCTTTCACGTTGCTTTTACCGCCATTATTGA
TGTGGATCGAGATTTCCATGACTACAATGATCGCTTTACCCTGGGTTCAC
TGAAAGAGTACCAATACAAATGCAATTCGAAGGGAGGACACAAATGCGAA
TGTTATTATCGTGGCACATATTTCAGTCCTGAAGGCGAACAGGCCATGTG
TCAAAGAGGTGAGAATGTTTTTATGATACTCTAACCATTGACATCTATAC
TCCTGGTTGGGTAATGAAGCCACTCATTTCCCATCCAGAACGTCCGCATG
TGGTTTTTACACAAACGCTAGATTTCAAAAAATGCAGTCCTCAAAAAGGA
ATGAACCACTAGATAGAATCCGTCGTCATGATTGCAGCGCGTCTCAGGCG
AGTTCTGGATTGGAAATAAGTGGCTTCAATTTTTCTTGCCTGGTAAAGGT
TAGAGATTCTACTCTGGCCCTTCGGGCTTTAAGCTCAATGACTCTAACCC
AATAGTTCGCTTTTTTATGATTCTGAAAGCGCTCATGAAGTGGGTAACGA
GGTTATTGTTCAATTACGAAGTTTTCTTACGAATTCAGGTAGATTTTAAC
AAATTCCAGGAACCTTTTCAATTCATAAGCTAACCATGTTCTTCCAAAGA
TGTACTTACGTTTCCCCAAAAATTTCAGCCTCAATGTTCTTATAACCTGG
GTTCTAATATTTCTATTTCTATTTGGTTGAGTTGCAGGAGGCTTTAGAGG
CCTATTCTCGCAACTATAGACGCTTACTAATGAGCGTCCCGTCAGCACCT
TGAATNNNATTGACTACCCAATTCCCCTCACATGGCATGGGTTAACCCGG
GCGAAGGAACGTTCACTTGCCAAGTGAACTGCCGGGAGTGGGAATCGAAC
CCTGGCCTCCTGAACAGAAGCCAAGGTCGACTACCACTATACCACGGCAC
CTATACCGGCATAAATAAGTCTGTATTTATCTTTTAGACGGTGCGTGTCC
AAACAAACATCGTAGCACCATCAGTACATACCGTATGGGTCAAACAATCA
CTACTACCCTCACAAACCAGCAACAATCTGGCATTCAGAAGATTCTTTTC
TGGACATTGATCAACGGTCGAGAAGCAGGCACTTTTCTTGATTACACTTC
ACAAGCATTGCAATACTTCAAAATCACAACGGATGGGAAACTGGTATGTT
ATTTGAATTCAGGATATTTTTGACGTAATGTTTATACAAAAGTACCCAAG
ATAAAACGGGTGTTTGCCACTAGTTTAAAAGCTGTTGGAAAACTCCCAGT
CCTCATAAAACATTACGTCATGAATATCATAAATTAGTGTATTTTCTGCA
GTTAACCTAGACTAGGCTCTCATCGGTGTTAAGTGTAAAATTACCAGATG
CCTAACCATCATAATCTTCGTACAGATTCCGATAACTCCGCCCTGGCATG
TATTCACTCTAAAGGCAATGGCTCCGTAAGAGTCTCTTTCAAGGTAGGCG
CTCTGTTTGATATTTCCCGTCCAGATTCGGGATAAACATTAAATGAGCCT
TTGAGCGAGCTGATTGGCTAAACCAAAACAGTCGCACCAAAATCAAAAGC
CAATAATAAACATAAACATTAGAATCCAGTCGCTTTCGCTTTCGTTTAGA
AAAAAAGCAAAGCGGTTTTGATTGTTTTGGCTGAAAAACCAGGCCAGATC
ATCACACTCGCCATATCCTTTAGAACGCATAATGGATGATCTGTTTTGAG
ATTAAAGCCATCCCGATCATTGGTTTCAAAGCCCCGAAGGTGCTAGAGAG
GAGTCATCAACCTTTTAGACATCGAAATACCGAAAGTTTCTTCAAACACC
GAAACAGCGAAACACCGACAGAAGAAAAGGGAAAATACCGCCACACCGTC
AAACCCACTCCCCTATTTAATCCCCGCTTAGATAAAAGCTCTTAATAGAC
AGGTCATCGACACTGGGGTGTTATTAATTCATAATATCAAAACCCTGGGG
GGGGGGAGCCAAGCAAATTGACTGACGGGTATGTGCGGGCATTAAGGGTG
GGTTTTTGCTGCCTGCACTGTAAGGGTACGAATTTCTAAATTCTAACAAA
AATGAAATTATCCAGTCAAAGTTTTTTTAAGGGATTCAATCCCCTTTACC
TAATTCTTCTTCTTCTTTTTTCAAACGAAATCTTTGTTTGATCCATTTTA
ATCACTTCAGGGAAAAAAAGCTAGACTGCACTGTAAGGGTATTCAACTTG
GTGAAAAATGCACTGTAAGGGTGTATTTTTCAGGAAAAACCACTGCACTA
TAAGGGTGCGATTTTGAACGCCAATTTTTAGCCCGCACATACCCTCAGTC
CAAAATCCGACTGCCCCCCCCCCGGGATCAAAACTATACAATATCATATT
TGTTTTTCAGTCAATCAGTGGGATTCCAACAACATGGGGAGGTCAAGTTA
TCCAAATTGTATACACAGATGGGTCGTGTTATTTCATCAAAATCGCTGGA
AGCATACAGTGTAAGTACAGTCAACTCTATCGCTAATTCGATCCTTAAGG
GATGAAGACTTTCCTTCCAATTAAAGAAAGATTCGAATTATAGAGAGCAG
CTTATACTAACTTTCTACCTAATGGGGTCAATGGTTTAGTTCGAATTACA
GAGGTAGAGAAGTATAAAAAAGGTTTGAATTAGGGAGTGTTAACTGCAGT
AAAACAAAAATAATAAAATGCAGACTTGTAGACTTATTATCGGCCCAGGT
CATAGTGATCAAAAAAAGTGTTTCTGTGTCTGATCAAAGATGGTGGATAT
AGTTTTGTTCCGGGTTTATAGGTCAGATGACCAAGGGTAATATTTTTAGT
AAAACCTCAGGCAAATCAGTTAATTATTGTACTTGTGAACCTTTTTTTTT
GTTTCTCGTTATGACTTTGCGCTTTATCGCAAAAATACAATGTAGAATTT
TCTTTGAAAAATTGACACGACAATGAAGTTTCATACAAAATGAATCAAAA
GCGTTGCGTAAAAAGTCATACGTAAAAAAAAACTGGGTAAAAATGGGCAA
TCCCATTACATATCCTGAGAGGGGGTGAACCTTTCCGGGGGTAATCGGAG
AAGAATTTCCCAGGCCTTCCAGGGGTTTAAAGGTGTATTTTTTTCTAAAA
TCTCCAGCGGGTAAAAGACTGATTTTAGTTAACCCACCCTCACTTTTAAG
GTATGTAAGTAATTTTAAGGATTCTTTTTCGCCATTTTCCAGGGGTATTC
ACACATTTCTAAGAAACTTTCTTTTTACGTTAAAAATGTTCCCAGCTGGC
ACACAACGTCATTTCAACGTTTATTTAACGTTCACAACGTCCATATAACG
TTAGATGAACGTTGAAACAACGTTATATGCCAGTTGGGATTGTTCACCTC
CTCCCCCTGTATGGGAATTTAATGGATCCCCGGAAGGGTTCCGCTTTTTT
CGAGTACAATCATTTTTGACCTAATAGAGTTGTTTTTATAATTACCTCTT
TCAAAGAGTAATTCTCACTGTTCTGGGTTTAATAACTTGAGTAGGAATTT
TCAAACACTCAATACGTTCAAGAAATGAACTTGGAATTTCTTGGAATGGG
GTACTACTGTTTGCGAGGTGACGAGTATACTCAAACAAAAGCTCGAAAAT
CGACACTGTGGAGACTGAATTTTCTTCCCCAATTTTTAGCCATAATTTTC
ATACTTTAGCCGCTTGCTCTCTCTTCTTCTTTGTCTCTAATTTCTAATAT
TCTTCAATCTATTTCCATTACAACTTTCTTTTTCCGTTTCAGATCCATAC
GACTTTTCAAAACTTTTTCCAACTCAACCTACGACACAATCTCCAACAAA
AACCACATTCAAAACCATCATAACAAAAAGAACGTCAACAAAAACAACGA
CCACAACAATGAAATCATCACCGACCACATTCAAAACCGACGCTAAAACA
ATCTTTACAACAATACCGAAAACGTCAGTGACAACCAAAAGTCCTCTAAA
ATCTTCAAGTCTACCTGTGACGACAGCTTCGCACAAAGTAAGTTGATTTC
AAGGATCAAAAGCTGGAGCTGGATAATTCGGCTGGGTATTATTGGGGGAA
GGGCGTAGATTAAAGTCTGCTTCTAGCTGAATCTTGCTTTTCGCTGAGTT
CAGTGAAGTAGACTAGGAGTAGACTTGGTGAGGTCACCATTTTGAAGAAA
AACACAAAAACGGGCCTCTTATCAGTACCATCCAGTCTACCACAAAGCTA
TAACAGGCCAACGGGCTAGGAGGGCACAGACCAATGAAGTATAAGCCCGA
AGGGCTAGAAGTCAATCTCCTTGGTAGGATTTGAAGCCAACAAATCCTAC
CAAAGTTGCGCGGCCTTGAGCGGCTCCCCTGGTTTCTACACAAATGACAG
ATTGAAACTAAAATTTACCGCTAATTTCGAAAAAAAAATCAATCGTAAAC
AAAGGAATTGCTAGATTCAATCTGTCGTCAAAGGCTTCACTTTTTCTTGC
CTGAGAAAGGTTAGAGATTGAACTCTAGCCCTTCGGGCTTTAAACTCAAT
GGCACAGACCTTTTTCAAGTAAGTTGATTTCAGGGATCAAGGGTAAGTTG
GAGTTTTAAAAACTTACGTCGAGATTGCATTGAAGTCTACAATTGGCACA
CAAAATTTTTTTCAAAAAAAAAGACACGAAATTTTTTGCACCTGAAAACC
ACTTTCACTGAATTTCTCTAGATTTTCTATCCCCACTATTGTAAAACTTT
CACTGAGGATGTGAGACAGGGATGTGTTTACTCCTCTTCCAGACTTCATC
CCCACCCAGCGCAGGTCAATCAGAATCAGATACAACAACATCACTTTCAG
ACAACAAGCCTTTGGTCATCGCTCTTATTGTCACCACCATCATCATCCTG
ATGCTTACAGCTCTTCTCATCATCGTTTGTCGCAAAAGGTTAGGAAATAA
ATTTTACAAAAAATGATACATCATTTACACGTTTTTTATAAGAACATCCA
AAAATTTTGAAGCTTTGCGATCTTAGCTTTTTAAGTTTTAAGCGTAAAAT
TGTTCTTAACATGTTCTTATTTTTGCTATTTTTTAAGTATATTGAATTGT
TCTAATTTAATTAGTGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGT
CTATTCGGGAGATAATAGTAACTGTCATACTTACTTAGTACCATATTAAG
GTAGGAATTCTAAATTCCGAGAGTCGAGCTCATTCCCGATGGGAGGTTCA
TAACATCATATCATTAATGAATTCTATAAATTACCAGAACATAAATTAGA
ATAATATTTTTCTCTATTTTTTATAGATTCCACAACGAAAAAGGTGAGCT
GTCACGGAAATTTGTTTTCAATTTTGATATTTTTTAGGCTGCTGGCATCC
ATTAACGGATTCCTCAGCGTAAAATTGAGAATTAGATTTATTGAATTTAT
AAGTGCTGTGTAGAAATATTAGAAACATTTGAAAACTGAAACACGCATAA
AGTTTCACTTTGATGAAAAAGTTGCTAGTGCCCCGCCTCAAATGACGGAG
GAGAAAACATATAAAAATTGGTTTCTAAAACAAAAAATGTTTCAGAACAG
TTGCAAAAAACTTTTGAAACTTTTCATTGTAGTTACATGATTGACGGTGA
CAAACATTGTTTTGTTAAGATTTCTCTAAGGCGGGCGAGGCCACTTGAAA
CAAAGTTTAGCAATTGAACTGCGACTCGTTTATGTTTTATTTCGATGAAA
TTTGTTTCAAGTGACTCTAGATCTTTAGCATTCGAGATTTTCTAACCAAG
GCCATCAAAATGTGAACCTAATTTTTGCTCTGTGTACTTACTATAGAGCA
TGTTTCCGACATGAAAATCACAAGGAAAACTACAAATATAGGATCAAAGA
TATGAAATAAGACAACTTTTACTTATACATTCTTTTTATAAGAACATCCA
AAATTTTTGAAGCCTTCGGATGTTTTTAACTTTTTGGATTATAAACCACA
AAATGTTCTTAACATGTTCTTAATATTATGGGCATCGAAGCCTTATGTTC
TTATATAGTTTGTTCTTTTATAAACAAACGTGTATTCGATTTCAGGTCCT
GAAGGAAGTATCAATTATAAAGGCGACCAAGCAGTATACGTTTCGCCTAC
TGAAAACAAATGCGAAGAGAACCCTGGTTTCTACGCTGAAAGTCAAGACT
TGAGGAACCCTCTATATAAAAGTCGGAAAGTAGGTGTAAACAATCAACCG
AAAGTGGAAACCAATCTTTATGAAGATTATGACAATCCTGAGATGTATGA
AACTTTTGAGACTACAGTTTATGATAATGAAAAATCAGGGTCTACAGGCC
GAAATGTGAGACCAGTTACTCAAGTAGGATACGATTATGTGGATGATTCA
ATAGACCCTAAAAATCGTCTCAAAAAGGTCGATGATTCTAGTACTGTAGG
GTATGCTACACTGACAAATGTTCCAGAAAACATTTATGCAGATACTACTC
AGCCTACTGTAGGACAGAATATAGCTCATGAGCCAGTAGACTACAAAAAT
ACTGAAGGACTTGTACCAGGCTATGCAGTTTTGAATAAGATGCCGGAGAA
CATTTATGAAGAAACGGTCAGGGAGGAGACTAGAAACGACTATAGTCTGT
TGGCAGGAACCACTCCACAGGAGGCTTATGCTGCTTTAGAGAACAGCAAA
TATGCGACGTTAGAGGAAAATAGATTCCAACAAGAAAACTATGAAACACT
GACGTCCAAAGATAAAAACCAGAAAAGTTTTTCTAAATATGTTGGATGGT
AATTATAGCGCTCTGCAACGCATACGTCAGAATTATTACTTTTCACTTTT
TTGACATTTGTACGAGTGGCAATTCCACAATTCAATGTAGCTCAATTAAA
GATACGTGCAAGTTGTTATATATCTTTTGTCAAATGATGCAATTAACGTG
CAAAAGAGATTAACGCAAAGGGTGATTTTTCACTGAGACTGTCTGGCGAA
AATCGATTAGCTGAAACAAAGAAAATTGATAGGAAAGCATTACTGACTCC
CAAAACAGTTTTCAAAGCGTTTACAACCCTTTGAATTTGAAGAAAATTTT
ATTAAAAATCATCAACTCGCATATCAAGGGATTTAGAATTACAGCTTCTA
ATGAACATTTTCTGTGACAAGATTCCTCGTCTTTTGTATCAAATCAATAC
AGATGAAAGTTTGCTCTTCAACTCTATCGGGAAAGAAAACACTTTTCCCA
TATGACTAATTTTTTACAAAAGAATCCCACTGCACGTTCTGCTACTTTTA
TGGCAACCAATTTATTTATGCTGCCTTTGGCTGCGTTTAGACCAGCCTGG
CATTTGTAATTGCTTGCAGTATTCTTTTGAATTCTATTGTTCCGCGCAAT
TGTTCGGTTTGTCAAATGCCTAATGATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCTTAAATGCCATGACAGAAAATACAATGGAAA
AGCTATTAAAATCGAATCCCTCATGAGCAAATGCCAAATTACAAATGCCA
GTTGGTCTAAACGCAGCCTTTTTCGCTTAATTGGTCTTTAAGCCAAGAGA
GGTCTACACCTCTCTTGGAGAACAAAAGGTTTAATGACCGATTTTCGACG
TTAAATCTGGAATGCTGATATGAAGCGATCAAAATCTGATGTTAAGCACG
AATCTTCATTGTATATTTTTTACAACCCTTAGAAATTTATGAAAAGGACC
GTTCATGAGAACCACTTATCTATCTAGCGTAGTGAAAAAGCACCCAAAGG
TTGATGGGATAGGGACTCGTACAAACACATCAAGAGCAATGATGATATCA
AAAATAAGATCTATTTTTAGATTCAGCGCGATGTATACAATAAATTTTTT
TCTTATAGCCCGAGGTCCACTTAAAGCTTTTTTTTTAAGCTGGAATAAAT
GACCCTATAGTACATGGTAGCTTTCAATTTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002981TCONS_00002981Clytia hemisphaericatranscript
TCONS_00002980TCONS_00002980Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002981-proteinTCONS_00002981-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:160360..169041 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18	0.27	0.44	0.53	0.17	0.14	2	2.57	1.83	1.46	3.93	1.97	8.29	8.77	6.76	7.7	1.73	2.41	14.99	13.37	4.5	4.65	4.05	3.81	4.15	14.02	0.46	0.83	18.74	16.94