XLOC_001982 (gene) - C. hemisphaerica

Overview
NameXLOC_001982
Unique NameXLOC_001982
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000030:241339..247226+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001982 ID=XLOC_001982|Name=XLOC_001982|organism=Clytia hemisphaerica|type=gene|length=5888bp|location=Sequence derived from alignment at sc0000030:241339..247226+ (Clytia hemisphaerica)
gagtgttaATGAGAGAGGgaagacgatgagagaagtgctgctgtttataa atcatactttatcgcagaggtctccgtacgggaatgcacacagagtgtac tacgaagcgataaacgtgagatacactctggtacagagtactcAATGAGG TGTTTAGGAGAAATCCATTTAATGTCATAGTGGCCCGGGAGATACTAGGG TTAAGGGAggctgggtatgtgcgtgccggACCTTCCAAACCCTTACCCTT AGAGATActcatttttgttgaaaaggtgacccttagagagacctttttta ataattttcttcgtcctccccccccccccccctttaaaattttttttccc cccccctttttaatttttttttcaaccccccccccccccccccagtttaA ACTCTTTTGTCAACCTCAGCTTGTGTGTCTCAAATGTAAAAACGAAGACA TCGTAATAAAAGGAGGCTGTGATATGTCTGCTGACGCATCTCGACTTAAA CTCAAAGACGCTCTTGGCTTAACTTTGCCTGAGCCAAATTTGCATAGTTA GCGTCTATTGGTGAACTATGAGATAATCAccataactcgaacccagtcct tCGCTCTTATCTTATGATATCAACTTAAACAATAGAGTGTCCATTATTAC AATTCTTTGAAACAAATTTTCTGCTCGTCTGTCGATAAACCCTTAAACAA AACAGTTTTCATAACTTGATCTCTCTATTACTCGAATACTACATTTTTGT TCCTCGTGTTTGATCGAGTTATGGAGAAATTGCTGATCACCTTCCCTCAT TATAGGACCACCACGTGACGGCTACTCCACATGTACACCACCCACAGCCA CAAGCGTCGCATCAATACATTGCAGCAACGCCCGGCGGCGTTAACCAACA ACAAGTTGTGATTGCCGCCCACCATCAACAAGCAGCCGCCCATCACCAAC ATGCGCCGCAAGTGGGTCCACAGGAAGTTATTCAGCCTAATCAACCACAA CAGACACAACCACATTATATTACAAGACCGGTATATCGAACGCAATCATG TAAgaatttctgttttgttttgttttaaacttttttttgttactACAGGT GGTAAACTTTAAAACTTATTAAGGATATAATGATCTCAAAAATGTGAAAC AGTGTTAATAGATgcttgaatttcaaagaaataaacaaaCACTCTTCATT CGGACTATGTTTCGCGAGATTTAATTTCGAAAACAAATCTCGCGAAATTG CACGAGATCACTGACAATGCTATTTTTAACGTTTCATGGGTCACTTTATG CAAAATTTTGGTTGACGCAAAAATTTGTCTAATTAAAGTATCTTTGATCT AATAAAAGTTCGAGTTCACGGAGAGTTTTTAGTTCGACGGGAATTAGATG GATCGAACAAAGTTTGATGAATGAGTATATATAGACTCAatacattcaat atttttcctttttctaaaCAGATCCTTCCGCTGGCACGCCAATCGAGATG CAAAACAATTCACCCATATTGAGTAACCCAACATCGGTGTATCCGAGTGC AGCAGCGGGTTATGTACAGAATCAACCGCAGATGTTTGTACTGAACACGC AACAGTACCAGCAGCAGGTTCGTCTTAAGGTAGACTACACATAACTTTTT GATTAATGATTAATAGGATAAGATTCCTTGGATTTCTTGAAATCAAGTCC CGATGGAGATTTGAAATGATTTTATCAAGAATTCTgtgaaaaatagtgaa aaactactaaaaactactaaaatagaagaaaaaatgaaaattgagatCTT CTAGAGAGGAAAATATTGAGCCTACTCTTCTTTCGGAAAGTTagctttgt tttttgtaaacaaaggagAGATTTCCATGTGTAAAAAAGGTAAACTTGGT ACTTTTCTAAGTTGTTAAAGTCCGTTCACTTTATGCGTGCGCTAATTCTT GTTTTACACTTGCTTActaacatattatataccgttgaaaagataattca gagcgctttaatttttggggaaaatgattcaaaaaaaaatacaaaataaa gataaaaaatggAGAAGAAGAAAGATTTTTATCCTTTGTTTGTaggaact tcatttttggtacaGAGGTACTTTGAAGCCTCCTGATTTCAGCTatataa taattatttttctctcAAAGTTCCTGCATCGAGCCCCTAGAAGGTAGCTC GTTCGAGTcgaaaaatgttataaaaatggATTAATACTTTAGTTCGACTT ACATAAAGATTCAACTTGTTCAAATTCGAATAAGAGAGGTTTGACAGTAT TTACTTTTGCATCTTTCAGATGATGCAAGGTCAACAAGGACAACCTTATA TGACGGCGCCTCACCCTTCCGCCATCCGTTTCATCAATCCAGCACAGCGC ATGCCCAATACCGCCAATTTCCACCCACAAGATAACAATGCGACCATCGC ATCAAGTTATATATTACAAGGTAAGGTCcacattttaaacaattttgaac agaaatatttttacagcCTCGCAAGCCATATCTTGAGTGCTTACACACTA AAAGGACGNTTTAAACAATTTTGAAcagaaatatttttacagcCTCGCAA GCCATATCTTGAGTGCTTACACACTAAAAAGACACCTCTGTATTCTCAAA TATGTCATCGAAACGAACTTAAACATTTTCTCTTTTAGCGACACCTCATT CTGTGGCCACACCCCACCAAACGATGGCGGCTTCCTACCAACAACATCAA ACGCCCTCTTCTCCCGCCACAGGGGGCGCCGGTTCAGTGGTGGTCTCACA ACATTACGTACCGTCCCACCATCAGCAATACGTTATGAATAACCAAAATA CAAATTATCAACATGTTGCGCACTCAATGCATTCACAAGGTAAACTTTAC TCTATACTTGTATTTCCATCCTTAAGTTGCTGGGAAGAACTGATTCTAGA GAAATTCGGTCCCGGAAATATCACCCTACCCGGAAATCTCCTTTCGGGGA AAATTTCCAGGGTCTGATTGAACTTCTGTCACCGGCAGAAGTAAAGTGGA CTCTAAGAATTTTCCATAAGATGCTTTTTATGATTCGAATCTCTATGACA TTCCACCAAATTAGATTACACGCTCTGAGTCCGAATTAAgcaaaattaaa ggttttgtcttGATTGAAAGGTCCgatgatgctgatgtagtaaaaacaag tgcgacaagattagaaaaggttttgaaaaaacgaaaatacattgaattaa aaaatttttcttcaaaaaaagggATTTTTACTGATACTCTTCCGAATGTT TCATCTTAtattataatcaaaacattcggtTGTAAATCTgctcgaaatca actttgctattcttttgtttacaaaagcaataaaatgtgaggtcacatct cgaaacaactttcgatctttcacttgtttgcagAATATCGTTGCGTAAAA AAAGTAGCTTAAATTTATCTGACTCAGCTTGAAGACACTGCAtaaaataa gctccttttattcccgTAAAGAGCCTTTAAGCATGTACTTAGCATCAGCT TTACCAACAAAATTTACACCACGCCTCTAAAAACGTGTATTCCTGTTTAG GGAACCCAGCGGCGGCAGCAGCGGCAACGGCCGTGTACCAGCAACGACCA TCAGTATACACAGCGGGTGGACAACCTCATCATCAGCAACAACACCAACA ACCGNCGGCCGTGTACCAGCAACGACCATCAGTATACACAGCGGGTGGAC AACCTCATCATCAACAACAACACCAACAACCGTTCGTCGTTATACCACAA CCCTTTCATCACCCAGGTAACCGAAAACTCTTTGTGGAGATTTGTCAGTT TTGAATTGAACTTAGCATTGATGAAGCCAGTTTTTACAAGGCCAAGATAC GGCTGACGGCATTATAGCGTTATCGgcgctttaatgatttttatgtacgg aattttaagtttgccttgaaaaacaGATATTCactcacaacttaccatca gattttaccaagtgactgaatcaatctggcttagatCTCTAGGCTAGCAT TAGGCTATTGCCATTATTGATGGGTTtcgataagataagataagataaaa agcTGAAATGGAAAAAGAGGACAAGGTTAGATTGAGAGATTATTAGTTCT GTGAAATAAAAAGACGAAAACACATTATCTCGGCTCCCATTTTTATCAGT ATTACTGCTGTTTTTCCAACTTTAAGGTAGAGAAAAACTGAGGCATTTTC GTCTTAGGTAACTGAAAATTCAGCATCTTAAAGGTTTCCCGAGTATATAG CCAACGGTGCCNGTCAGTTTTGAATTGAACTTAGCATTGATGTAGCCCGA GTATATAGCCAACGGTGCTTAATTATGATAacctttcttctttctttctc agGCCAAGGAGGGTTGATTCAGCCGAACTTTCAACAGGGAAATTAGAAAA GTGAACAcataaaaaacatagaaaatggTTCAATGGTAAGCtggtttatt tttcattcgACATCTTATCGGGTTGAGGTTTTGCGGGTCATTTCAAACCA TTCATTTGGCTGTTAGGTTTTGAAACATTCTattttattaaaggttttgt ttttaaataagagtgatatcgtttgcttactcatcaattttaatttaaaa gctttttcacattggattgacacggatgtgtaGCAAGATGAtcagaaaga gggaaagaaaaacatttttttgtttataccagcacaatataacaataggc agacactgtcctgattagacaggagacccgtcctgtatttttataatctg atgtatacggGACGGGTATGACCTGCGAGGCACAaatctgcctcaaaaaa tttacagtggaaAATTCGAAATTAGCGCTGCTGTCCTCactaaaacaaaa accaaatttcggaagttgcgctttctctaagaaagtgtgaccagcaaaag aataacaaaatttgattggctatgttttcaaccgttattaggatctggga aattcaaactctcaggccataccatgctatatatttcgcctcaaattgtt cttataaaacccACCCTTTTTCACAGACCCAGTAAgatattccattgttt tcaagtcaaaaaaatccAGTAGGGATAGAAAGTAGCATATTGATGAtttg tttatttaattattttcagtggggtcAAGAGCGGTGTATACTTTGCCAtt tggggacgatattttagccaatttttttcagtggaaggggtcccaccggg tctgtgagaaaaggGGTGTTATAAAGATAGTGTGTATAGCAAAGATTTGG TGCATATGCACAGGGGGTAGATGTACCTGTCATGATGTTTACACGTTtgt cataagaacatccaaaattttccaagctttcgaatgttcttaacatgttc ttattttcaccattttgtgaccatttttatcAATGTTCCTAATAAATAGT TGTCagcaaagcctcaaaatgttcttaacttgtacttgatatttttgcca tcgaaacTTTTAAATGATTTTACTTCTGCATTTCTCTATTTTGTGTAGGT ATGCTTACGTGGGGATGTTCAAGCGTTCAGTTTTTGCAAATgaagaaaac acaaaaaaatagaaagcaAATTCACGTCGGGGAAATGCTCCGAATCAAGG TTGAGAGAAGAAAAAAGAGACGAGATTACTAGTCTATGATTACAGATAGA ATTGATAGATATTTTCTCTTCGGGAAACGATACAAACTTTGTATTTTAta cgaaaaatatttagcaaAGAATAAGATTTTATGCATCCAGGATGTGACAA TGCCAAAGCAAtgtcttttcaaaaattggataaaaagatattttgatgag ataataaaaagaaagaattcagaaatgaaataaaatta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003550TCONS_00003550Clytia hemisphaericatranscript
TCONS_00003551TCONS_00003551Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003550-proteinTCONS_00003550-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:241339..247226 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
100.48 90.91 95.56 101.79 69.25 51.57 71.91 84.95 44.24 69.66 47.22 32 39 39.04 36.41 48.59 82.77 72.88 26.6 35.85 48.64 52.12 67.54 64.29 63.07 62.29 58.01 51.54 77.82 80.64