XLOC_002278 (gene) - C. hemisphaerica

Overview


Name	XLOC_002278
Unique Name	XLOC_002278
Type	gene
Organism	Clytia hemisphaerica (Jellyfish)

Sequence

The following sequences are available for this feature:

gene from alignment at sc0000039:760987..774927+

gene from alignment at sc0000039:760987..774927+

Legend: gene

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_002278 ID=XLOC_002278|Name=XLOC_002278|organism=Clytia hemisphaerica|type=gene|length=13941bp|location=Sequence derived from alignment at sc0000039:760987..774927+ (Clytia hemisphaerica)
AAAAAAACAGTCTAGTTTTTGTTTAACTTTACTACAGAATTTGTAGGTAT
TGATTgagattctttttttattttcccaaATAAGGCATTAGAGTCCTTCC
TTTTTACATTAAAAACTTGTGTACCCCACGTTGAATATTCAAGGAGCGGA
TACGATTACAGTATAATGTGGATAGCTAATGGCTAATGCGGATGTCtgtt
tttcgacaaaaatatctgtttccccttTTCCAAGAGATAGCTTTTAGGGA
CCCACTTATATATCAATGTTTCCCACAACTAACTTCAAATTGATGCGAGG
AGGTGGGGGTCAGAGGCAGTGACGCtaagaaaatcaatcaaaacattgat
ttttggggccAATTGAATTCTAGTTTTTAACGGGTATAGGGCGACCATCG
AAAAGAACCATTTgctttttccagattttttcccGCATCTCCGTACCAGA
AAATCAGGGGAAAATatgcgggtgacgcgaatagaacaattttttgatgg
ccGTCTAGCcagatattttttatttagtaaCTACTCTCGCTCTCTACGCA
TAGTTTTGTCTATTTTTCATAGCTTTTACACAAAAAATCAGTGTCAAGAG
ACAAGACAAACtaaggccaggcccaattgatagtttggtttgtgttagcc
tggagatccatgctatgatttcttatttaggggccgtcgacattcgactt
tcgaattttttaacggcatttggccgttatggttctgaccccctcccccc
ctctacgttaacggccatcaaattctctaaagttaaaaaattgtcaaaaa
tcgatgaaactctaaattttctccttcacattcatcgttgtttcgtcagc
catctttaatatcGCTACGGCTTCGCTcagtttacatttaaaaaataacg
gagatataatttctaaacttttttctgaaagttgCGCGAATCAGAGCCAG
AGTTGGCTGTCAAAAAGGTAGAAACTGTCtcttttttcacccaaaaatgt
GCATTGATTCACTGAGGAAAGGAGAATGTTTCAATAAGATGNNNNNNNNN
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NNCCTCGTGACTGGCTACACTATGATGAGACGAGCTGAAACAAACAGCat
catcaatatgaaaatttacatcgGTCCTCACAGGATGGATGCGTAAAGAT
ATTACAAAACAAGCTCAAGGTAACTCAAGGTAaggaattaattatctccg
taatcataatcaaaagaatagcggcatttcaaagaaaaaagaccaaccgt
ctgcgaaattcaagggccgcgCGGACTGTCTAAACAAATGGAACAcgaga
cataaacatcgggtcgtttgttttggttaaaattattctaaaaaatagcG
AAGTGAATACTTTAGGTATGTGACTTTAGCAGATCTTAGTtgataaaagg
aggaaaagaaatatggaaagtaacatttgtatggaataaacgtctcaaaa
atcAATACTTTCAGGTGAAAAGAACATTGATTATGTGGTGAGTTGACCCC
TAAAGAGATTTTCGACCTTCCCTTAACGGCACATGgtcgaccccctcccc
cccttaacggccaaatgccgttaaaaaattcgaaagtcgaatgtcgacgg
ccccttaacgatccggataggagatcgattgAAGATTCAgccagtataga
cctaactcttcatacaaaaattacgggaaacgcatatttggactttgtac
cctatgctgcactcaagcacttaagccataaagtcccgcaaaggcgggac
aaaaatcagttttttgaagtttgcaaaaaaacgccatatagaagatcttt
caaattcagtgtgtgaatagagcagtaaaaaatacaacttttttattttt
ccttttttttgcaaaagttctaggaatgaaaataaagggataaNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgtaagtgcactttatagt
tttgattcccattgaagaatcatattctggttttcatgttattagatgct
gttttagagctttaggtctacactgtcagccattaaaaagtcttgagtat
cgaacctacgttgatccattatcgagctagtatttcaatcgagtatatcg
attcgtcatcgatcgttaatcgattcgccATCGAtctgttatcgatcgta
aatagagtatgagtcgatagggttgataagatcgataaaagatcgatgat
agattgATAAATAATCAATAACTAATTatgagcttaaaaaaatcttgagt
atcgatcttcaatcgatctcctatccggattgttaagtaatccatcgatc
acatattgatccgtcatcgagccgttccgatggtcgatcctatcgagcgt
gGAGCTTGCATCAGGGCGGCAAcctaaaatatgttccgttcgcgtcataa
aacatcttcaaatccagtcggtcagtcggtcggtagtaaattttgtcggg
tttttcaaatcttaaaaggaccttattttcggctcTCAGGGGTATTGGCC
CTACCTCGTTGCCGAATttcgacttgaaaatttcaataagggtacatgaa
aaaactcaaacgggactcaatgtgggttaagtaaacaaaaactcgtagcg
aatgatgattcaaagaagtgcttacagtagctatcaaaaactttttccga
caTTTTTCCGACTTAAGTCCGACTTGGGATTTATGTTTTAAAggtgagtc
ggtcgggcgacgcgaacggaacatatttagccctcaaataaatgacctgt
cttgtccttaaaatacaaagttaaatcaaaacaaaaatggtagagtagag
ctgcaagcagagctgcgtagttcatttgttttgaaattttgctgctttga
ttggttagtcatttgagggctatgcatgttagcctccactgatgcaagtt
acccgacttcacggtatatacCCTAaattgctctaacttgggactatctg
acaaaacatgggacggcaatttggccaccatttcaccagcatttcaccga
acctccaaagtcatttaattagagtcaatgaacggcgtattaaaaataca
caatttctctttcgcaccaagtaggcttttaaatcgaaatatgaaagtTG
TTTCGTAGTGGAGCACACGcgagttatcgtgacatgttatgacagaaagt
atgatcgataaacttggtggagttattaaaacaaatttgttgtcgcaatg
agatttaacagtaagtgaaaatacaggccagaatttcaacagtcccatgt
ttcgaccaatcgtcccaagttagagcagttgacggtagcatggtatgggc
tgagagtttgaatttcccagatcctaataacagttgaaaacatagccaat
taaattttgttattcttttactggtcacactttctttcTTATAGAGCAAT
CACAAGTtctgaaatttgttttttattttggtaagtgaggacagcgctaa
attcgaatttcccactataaattttttgaggcagaaatctaCCTCacagg
cagttagtcacactagcgtccggCCAAAATATGtgtcaaagattaatgct
gcgaaaacgctatatcgtttacttgactctcaatcaaaaaaatgcgccgc
aaaacttctaaagggattcattaaaaaataacccagcactttttaatgaa
attaacattctcaaaaactattagaaattgcctaaaatttgagccataga
tgaaaaaatttgagccaagccaaccttgaaaactaatttgaagatcaact
tcccaagaaaaatatctacgggggagacggaacccacctagatcctcgca
ctgccggataggctatttcccggaaattttgccggacctcaaacactgac
ccatttacatgtgctgaattgtttttactttagcgtataaacaaggcctt
aaaaatcgaagcgctgtctcgggaattgaatgacaaattttggttNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
tggctgctgcacgttttattttgtttcaaactttcaagttttaattaatt
gtcttgtgaacttgattcaggtaactctcatccttgttgtttcaaataca
tcctgtagatgactgatgttgtttttctgaaagcttgatttcctagtgtg
actaactgacaggTCATACTCGTCCTGTATAccataacttggtctaatgt
cgacatccttCGTCTTAATTtgacacccttttctagagctgaaaaataaa
aaaaaggtcgaaatcatttttctttgtttagtggtaagggaggatagatc
ttttttcaatcaccgattccaactttcatattattcctatctggTGTCAA
GATTAGAAGACAGATGTCGAGNACTAACGGGTACCCGGTGTCGCAcaccg
gttaagctgtagctgaacacactaaaagtcctttggattttgaagctggc
ttaaaaaaacgatcaaatgaataattagatatcttcaaagtttgactcta
accccagagatctttttctcgcttcgctcgcattaaatacgccATCTAGA
TTcgacaatttgaaaaaatgtcatGGTGACGAGGAGggaaatgtagaaat
gacaattcgtNcttgagtatatgtcaagaaatgaaaaaaattgtatattt
ttacaattaaaaagaataatgatagcttgataaaagcaagataaaatata
gttcccaagcccccagaccttactgcataaaagttaggtacccccagaga
tcataggtaccccctgaaattgaaaaaaaaatccagtccccagccttttt
caggaagattttggttgtagaacccccccccctgcgggcttggggggggt
tcatgccatgtcataactatcatgaatttttttaagaactttttgaactt
tacacaaaaaagtgaaaaatgatagcaaaataatacaatagcacacaaaa
gattataaattataaattatacaaaaatctttatctgatcgtgatgatag
caataacaataataataactctctaaaatttttaatataattttgattct
tattgcttatcttattgctgccaaaaggtgacttaaataatttcaagcag
aTTAATAATAAAACCTTTTGCCATTTNNNNNNNNNNNNNNNNNNNNNNNN
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CCCTGCGGGCTGTGGAGGGTTCATGccatgtcgagattagaccaacttac
ggtacatcagattataaaaatacaggacgggtctcctgtctaggtTTGTG
TCCTTCGACCAACTCTATTCTaagtatttgagaaaaaatgcgGTCATTTT
GAGTCGGAAAAATCAAATCCTTCATTCCTCCTTTTCATGTgagcaacaat
ttttttttataaacaacatCCACTTTGCGCACAGAAACGAAATATAAAGT
AAGGCACAGCTTACACCACTGTCCCTGCTTACACCAATGTCCCTGTGTAA
CAAATATTAAAGCACCTAAGAGTAGAGTTGCGACTgtgtaccgtaacttg
gtctaatttcgacatccctcatctaattttgacacccctTTTATCAGCtt
aaattgatagaaaggtcaaaactatttttctttgcttagtagtggtcaga
gaggaataatcctttttcaatcagcgattccaactttcatattattcctg
tctctaaaaaaCGGTGATCGGAATTAGTTaaagggatgtcgatattagac
caataTTCAgtattctttataaaaacacacGGCAAACGCCTCAATCTGTA
TGTGTAGAATTGATTTTGTGATTGCGACGTGTGCCTTTGTGGATCCGGGA
TTCAGGCTATTTCTTTATGTTCGCGGTTGGAATCCAGGATTGTGCGATTG
CTCAAAGAAtgaatgatttcaaaaattgaggtttttagtggggaaaagta
aaaaaaggttCCAATTTTAGCTAACAAACAACCGACCAACCcatttttta
aagcttcaaGGACACAAACCAAACAATCGATTGAGCCGGGCCTAATCGAT
TTTTCAATGTAGTATGAAAGCAATTACCCTCACAGCTGTTGATGCAAGTT
TTTAATTGTAAAtgtatgaaaagaaaaaaattaccatttcattgattttt
ggtGGAGGGGGCACTAAGTGTAGGGGTGGGGGTCTTGAACTTAGCATCCT
TTAGTCACGTTAGTCGTGGTAAAATAGATATGTGAGTGGCCCCTATACTC
AAAAAATTGGGAAACAGTTCAGAATTTCTAGGAAGGAGGATTTTCTTACA
ATCATTTCCctgctccagctgatgacgtcatcattgggaaacatcaatat
ttctaggagatgacataataaatggggaaacagatatctgtctccaaaaa
gatgatattgcttTGGAAACTAAGTCAATTTTCTAAGGGAAAACAAATAA
AGATTTCTAGCACTGGGAAACAAATATCTATTTAAAGTTACCAAAATACC
AAAGTTTTGTAAGTAAATACAGAAATActgaacatttttaggcaatttac
TGGCAGCATTTCAAATACTGTGCATTCTTTCtcaaaatacagaaaaaaac
tTGATAGATGTTTTGCTAAAATCTTagatttgaaacattttttaaaacaa
tatcaATTTTTATTAGGACTTTTGACCCTATTTGAGCTTGGTCCCCTGAT
TTCTGCCTACTGTCAGTGTAAATGAATGTTGGATATTCCAGGATTACAGT
ACAATTATACCAGCATTTTAGGGACTTTTGCCTAGCTAACCCAAATGCTA
CAATCTTTTTACCTTGAAGAAAGACCGAAATTAATAAGGTCTTTCTTtca
gctttttaaaaaaaaggtaTACCCAATCAGAAATTATATGATTAGTGATG
GTTTGTCTATTTGTGGCCTCTTGACTTTTAATTTCATCCTGGAAGCACCA
TTTTTTGCCAAATGAGATTATTCTTATCTATATAGAAAACTTGTAAAAGC
AGTAAATTTAAGGAACAGGAAAATAAAGCAACTGCTCATGTAGAAATCAG
CATAGGCATTAAAGACCGTATTTATTAGTgacatttgaatttttttcaaa
acaaaatctttatagaaaagaacaaatgtaaaacaaaacataaaaatcaa
aaaatgtcttatttttttttaatctaataaaaagGGTTACCTTTACAGGG
ATTtactattctttgtggctttccTGTATTTTCCTGAAGCATTGTCAATT
CTACATTTCACTCCTTAACCATGacatacaattttttcaaattattgaga
ACTGGACTGCATATTtaacagggctgcaaataagcgtcaGTCATTggtca
atgtccgactgaaaaagccatttgaccgactgaaaatcttttatgtgtta
tgatgtccgaatgaaaaaaggaataaaccattaacttgagagttgaaaat
aaatctcttacaacccctgtctcttacttagcctattcttttaatactgg
cttcctttgtagctttcaagggtgtttcaaagttaacttttatcgactcg
cttatctttgtaactttcaaaagtgtttctaagatcactttcaTTGGCTT
acttacttcataactttcaagagtgtttctaagttaacttttatcgactc
gctttcttcataactttcaagagtatttctaagatcacttgtatcaattc
gctttcttcgtaactttcaagggtgtttcaaagttcacttttatcaactc
gctttcttcgtaaagTGTTTTTAAgaccacttttatcaacttgcttactg
tacttcataactttcaagagtgtttctaagttaacttttatcaacttgct
ttcttcgtaacttccaagggtgtttctaagatcacttttatcgaatcaat
ttctctgttacagtaacaaactgttccaaggtaacttttatttcacctac
tcgctttctccgtaactttTAAGGctgcataattttagaaaaaatataca
ctgaatgaccaacatgattttgagtttgaccgataggatttcatttttgt
tggacatgatgtccgattgactaaaaatatttatttgcagccctgatTTA
ACAAGAGCGAAGCAAGAAAAATATCTAGCAGAGTCGTTTCGGATGACACT
GATACAGTATAATTTTGAtaacgatgctctttctgataattttttactta
aaacaTTGCTTCACAGGGACACAATCATCataatatggttaaaagataag
ataCGTGGGGAGTACAACTTTgaagacattttttttatttgatcatgCTT
TTAAAGCCACCTTCAACATTCAAAGGATTTTTCGTGTGTTCAGCTACGGC
TTAAAACCTGCATGCGACACCTGATACAGGCTAGTTAAATTTAATTATCT
TATACTTTATTAAGTTCATAAGGATTTCCATTATATACACTTTATTTCTT
TAATGTATTATAGCCATAAAACTTAATCTTCAATAATGCCATTTGATATC
TTGGAAAAGCCAATTTgctattcaacatttttaactGAAGAGGACTGTGG
AGCCCCTTTAAAACGGTGCACTAAGTGCCGCTGTGCTTGGTATAGCTCAG
TAGAAGAGCAACGTGCTAACTGGCCTCTTCAcaaaaagctttgtaaaaag
CCAGATTTTGATATGGTAAAGAAAATGAGCTTACAACAATGTTTGAACAG
CCTTGATAAGATGTCATCACCATTGACTATGACCCATAACTACGCAATTA
TTCTTGAGAGGGTTTTTGATTTGGTACGGAACTCAGACGTCAGGGAATTG
GAAGATGAATGGGACCATGAGGATGTGGGTTTGAGGCTTCATTCATACAG
TCGCCTTTTGGTACGAGTTGATGACCCTGGAGActatttgaaatcttttt
accAACTTGCTTGGGCTTGTCCTGGAATGCCTCAGTTATTATATTTCAGT
GACTTTCGTTCCATTGCATTGACAAAGATGATGTCTGATTTCCCTAATGG
GCGACCAATGTTTgacaatgaagaagaaaaggCATCATTCAATGAGGAAT
ACAATGTTAAGGAAGATTCAagtggtgaaagcatagcatgGTTCATTGTT
GGTTTTCTTGTAAGGTCATGTATATGGGGAAAGCTTACCATGTCTAGCAA
AAATGATGGATTTGGAAACTTCAGGGATACCAAATTTGGCCATGCTGCAA
TAATTCGCCTTGGTCAAATATTTTCATCCACTGTTTTGAGGAAATGTGGC
ATGAGTGCATTATATCCAGTCCCTagtcttgttttgaatattacAAGAGA
AAAGCCAGATGTATTTTTACAACTTTTGAATATGGGCATTGGACTTGGTA
TTCTTGGATGGGCTGATCAGGAATTTGGAAAAGATACCTTGAAAATCATG
TGTAATATGGATCTACGTGCATTGTCTGATGACAAAAAATTGGATCTATT
AGAAGtgcttttttgcatttttgagaAGGAGCCAAAAGTACCATGGGAAA
GTCAATCTGCTGATGATTTTAATCCATGGGAAGAAGCTTCTAATTATCAG
TTTGATGGAAAAGAACTTATTAAACTCAGTATGAAGCTCGTTGTTAATGT
GTTAAATTGTTCCAAAGATTTGAAAGCACTTCTTTCAAAAGGAGTAAATC
GTCGTCCTGAATGTGATGAATTTTCTTGGTTTGATGAAAACAGTGATCGA
AAGAGAATTATTTTGGCTTTTCTGCTTGAAAAGATGACACTTGTAGGTAG
ACATTCAATGAAAAAACTTGCCACAACTTTAACCTCCTGGAGTCAAATTG
AGTTTTGGGAAAAGATGAAATATGCTAAATCTGCTTTGTCAGAAGAAAGT
TATGAGAGATATTGTGAACAAGCCAAATACTTTCTCAATTTACCAGATTA
GCTTCACTTCCtaataaaaacttttctatgaaaaCTCAAGTAGACAAACT
ATGAAAAACACTTTGAATGTTGTTAAACATTTGGTTCTTTGTATCTGTCT
TAGTAAACAGAACTGGTTTCGTACTAGTATTGGTTGATCTTTAACTAATA
ACCCTTGTATAATGTATATAACTAACAGTTTTTCTCTTGGCCAAGTAACT
AACGTTTTATTTTCCCCTAATCATTCTTGTTCCTTTTTTGTAGATTTGTT
TTGTATTTGGTATTGGTTAGAACAGACTTTCACAATGAACATTTAAGCTG
TCATAATGGCCAAATTATGTCTTTGTtgcaaaaacactttttgggCTTTG
GCTGCTAGTCTTTATTATTTGATTGGGTGGGTAGTACTgag

Gene-mRNA-Prot

The following transcript feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
TCONS_00004076	TCONS_00004076	Clytia hemisphaerica	transcript

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
TCONS_00004076-protein	TCONS_00004076-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000039	supercontig	sc0000039:760987..774927 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.73	2.25	1.06	1.02	12.56	9.65	7	8.79	5.24	4.86	4.65	3.67	3.85	3.6	4.73	5.25	4.95	4.65	1.04	1.47	4.58	4.62	10.16	8.91	6.42	8.6	2.81	1.63	7.97	7.27

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XLOC_002278 (gene) - C. hemisphaerica