XLOC_002940 (gene) - C. hemisphaerica

Overview
NameXLOC_002940
Unique NameXLOC_002940
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000051:706316..717957+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002940 ID=XLOC_002940|Name=XLOC_002940|organism=Clytia hemisphaerica|type=gene|length=11642bp|location=Sequence derived from alignment at sc0000051:706316..717957+ (Clytia hemisphaerica)
CTGACGCATTCATAAAATGAATGAACAAATAGCCATTTGAGGGATAGACA ATATGGTGAATATCGCTCTCCTAGGGATTAATATTGAATGACGTAATACG ATGTCATGGTAACAATACGTTTTCTCACCTGGGTCCCTTCTCCTCTATTT TTCGCCTCCGCGTGAGAGCAGAAGAAACGCGTAAGAAGAAGTGCAATAGA AATAAGATTGCGAATTTCTGCTGGATCCCATAAAAATAAGATGGCGGACA AAACCAAGGTCCCTCATAAaagtaaagtaataaaaattgggtcTTATCAT GTTGGAAAGACAATTGGGAAAGGCATGTTCGCCGTCGTTAAGATGGCCGA GCATCATCAAGCAAAAGCAAAGGTATAATTTTTTCCAGACTTTTTTGTCT GATAAAAATCAGTGGAAAATTTGACGACCCGTACCAAATCTGCAAATCTG TAGCTACCAGAACCAGACGCACCTAGATGCACCACCAGCCTGATTCATTC ACGTCAGGTTGAGTGGTTTAGATTGACCAGTGGTAATGAGTTTTCTCATT TGACACTGGAAATTTCCTGTCTGGTGCTTCCTTAAGTCTGGTGCAAGTAA GTAGGAAGGGCAGGCAGGGTCGTAAAAATTGCAGCTGtaatattttgttg aaaaatattcaaagcCTGCTAAAAAAGATAAACCATGGAGGCAAGCTttg aaatgaatgtttgatTACCCACTTAATCAACTCAATCAAACTTTTAATCG GACGATAGGTGTTTGTTTATACGGAACGAAATCGAACGGTAATATCGAAC CAAGAAATTTCTGTAAAATTGGATGACTGTTCGGTTGATCTTTTAAAGTT TAATAGCAATTCAATTATAGTTTGATAGGTTCGATCGTAGCTAGACATTC ATTCAATAAGCTTCTCGCTCTTTTCTAGGCCCTTTTTGCAATATCTTTGC TAGTACGAAGCTCGACATGGCccgcccgagaattctcgggcctctacggg ccatgttcgggccgagagaccctatcaattcttttggcccgaacatgacc cgagtcattcaggccatgttcgggccatgttaaatgttaaattgattcag catgtccagtcaaacaaaatagtacaaaataagatttgtctgttttgttt atatcgctcaaaaaaactttacgagcttcccgtggacacacTTCAGTTTA AAActaggaccagtttactagcaaatatttccaccctaggTATATCTATA ACTATGTTTtaataccaaataagacatttaatatttatatgaatttacaa cattcatatatttaatataattaagagaaaccaagtttttctcaaagaaa atgttaaaaaaattcagtcctgaaattacacgcctgtttaaatcatgttt tcaaaaatggccagctcgggccatactcgggctttacgcgaatttcaata aaagttttggcccgagaattctcaggCCATGTGGAGGGTCGTTTGCTAGT ATATCtgagaaaaatagcaaaatgatTCCGGAAAAGCACCAAGATACTAC TCTTGAACACTCATCCACCAACTCGAGCATACATCAAACAACAAGGAACT GTATTTTTAATGGAACTTATTTTAAACTAATCAATATATTTTCCtttaaa gttcgattactgttcgatttggtttggtAGTCTAACACTTATCGTTTGAT TAAGTTCAATCGAGTTCAATGGTTTGATTAAGAAAATtggttcgataggg ttcggtcGACATCCCCTGATCAATGAAGTGCTTTTTAGACTCAATTTAAC AAACAAGGTCCTTTTTGAAGCAATCTTTCAGCAAGAAAAATAAGAAGTCT TACACACAGTTAGTCATACTAGCATTCTGCTGAAATGCGTATTAATTGTG AGTTAGTCACACTAAAGTTTCGACGAAATACATATCAAAGATTGACTCAC AAGCAAAAGAATGCACTGCAAAACTTCTTGAgagatttatgaaaaaataa acagaCACTAAATAAACATTTCCTTTCCAAAAAGCTAAGAGAAATTACCT AGCAGATTACCTAAATATTGAGTCATAGATTACAAAATTTGACCCATGTC AACCTGGAAAactaccataagttggtctaatgttgacattcCTCCTATAA TTTCAACATCCTTTTTTAGAGATGGGGGAATAGCTAATaagaaggtcaga atcactgatggaCTCCTCAATTATTGATTGCTGACCAAAGAAAATaagtt tcaatcagcgattctgaccttctatttattcatatctctaaagaaagtga tgaaattagaagagggatgtcaacattagaccaataCGGTAATTTgaaga acaaagaaaaagatcaacAGTGGAGAAGAAACCAAACTAGATCTGCGCAC TACATTTGTAAATGGAGTAAAAAACAAAAGTGTTAATAAGGAAAAagtat tgcaataaaaaaagattaagGTTAAAAAACCTGGCTCTCGGAAGGAAAAA GATTTCATCCCTTTTCGAGATtcccaaaaaagattttcaaaaaagattcc CCAGCAGAAAGGGAGAGGAACAGGGAGGAAACTATAAAATCGTTAATAAT ACCACCAAGCTTCCTTATACAGACAATAAATCTTCTGTCCTAACCCCAGA CAATGATCCGTGTAACTTTTCCCATTTTAGGTATCTTGCAAAGTACCCTT GCCctgtttttatattttagttGTAGATTAcattatatttttgttaataa aaTTTCCCATCGTAGTTTTCTTCTTAAATATAAACTTGGACCTCATAACC CAGATATTCATCTCACTGGTAATAAAGATTTGCTGATGATGTAATTCTtg ctacagtatgtggcccccaaaacgtcgatcaaatttgaaacttctctcaa atctagaggaaaagaagttttacaaaaatttttgctgcatgaaaaacttc atcgctactttatttcccggaagttctttttcaaaattttcaatttcaac aatatttttcaatcgcttaaagataggtagcttttttctaagggccccca aaacggcaggtttgcaattttagcgatttctcgagatatcttcaagatat gaatacaaaattttgaccatagtttggaaatggaatttagagggttttgg gcataaatttgtttgataaaatttttacagtatgcCCCTGGTTGTTAAAA CGCAGGTTTGGGCCCCCAAAACgcaggtgtagttaaaatcaaattattaa gcccagtggtaaaagggggagaaactatgaacatatttgttttcatgttt tccattatatttacgacccgatgcatgtaaaatttaagatttttataaaa tatttcaagattttcgatgatgcaaagtccaaactgaaaatttagaaatt ttcaaaatgacaattttgatttaacaacgtattaatcaagtttttgaaaa caaatttcttttgaatatagtttcattcatgtatggaatttGCTGTGAAA ATcttagaaaaacagcttaactgaagctgaaaatattaaaagctaaaagg tatttttctcctacattttgcaaaaaatgacaaaatttgccgtttttgct gattccgCGAACATttttataccttaagggaagaaattttcgcgagaaga aattttcgcggaatttaatttcgcgaatcagagtttcaaaatggcaaatt tcgcggaatttaatttcgcaaatgagccgatttcaaaagtttcacggaat ttaatttcgcgattgagaagaagttatcaacttagattaacttttaagca tcacggagttgcttatatttgtttatatttgataaaagatacacgttata atgtgttataaatcaattgtgtccatcttttttggtaacatctggtcaaa aacaacaaaataaaagaagaagaaaaaaaatccaatttcgcggaatttaa tttcacaatttaacaattttggtgtgtttcgcggaatttaatttcgcgaa ttgcgccccaattcgcgaaattaaattccgcgaaaatttcttccgcaaaa atttcttctcgcgaaaatttcttcccttaaggtatgtaatattaattttt tgctataaactattatttcaagctgataggaatggaattccaagattttt tgctgtttctcatatttagaattttccgttttatcaatgctgattgtAGT GCcgcaaaatactggttgacctttaagatgctatatcttttacccatcgt ctaaagtcacagatgtatctgaattttctgaacggcattaggtgtagaaa gtttcctataccccattttcataacttattttcaatatccaagtagctag agtgagttatatgcaatttttatctaattttggtgttaaaatatttcctt cagacgcaagtatgttattttgaatctgtctggaaccatcaaaaacatgt tcatttttaagtataaccatcattctttcaaaataaacaaaaatcgttta attcttaTAAATCTACAAGTGAGAATCCTCGTTTTAATGatgacctccgt tttgggggctgTCTCTGTTTTGGGGGCTATATACTGTAGTCAGTTCTAGT TTTTGCAGACACAAAAACTTATATTACACTTAAATCAGCTACAGATTGCT AAGGGTTATATCTCAACGTTTCCCAAAACTaaatttttcagtattttccA GTGAGTATTTTTTCCAGAAGTCTCAAAACTGTTTCGCTTCGGGTATCAAA TTAAAGAAGGTTGAGGTTGACAATTacaaataccttaaaggaagaaattt ttgcggaaagaaaatttggcggaaagaaaatttggcggatttggcagaTT TAGCCAAAATCCACCGAATTaaagttcctgccaaaatttattttttcctc catccgccaagttaaattcccaccaaatttaTCTTATTTTACGCATTCCC CAAATTGGTgcaatttcaggccttaaagcaggtttttttgcttatttgat aacgattttggccaaaaatatctttcaaccgccaaatcaaattcccttca aatttgatttttccagccatccgccaaattaaattccctctgaaaaattt ttttcggccatccgccaaattaaattctcgctaaaatttcttccgtTAAG GTACCCAAAGACACCTACATTCCATCatctaaaaaaagattttaagattg caaagcatcttctttttcaatttttttaatttctaattttcactttcatt ttcatgcttttttgtaattttatgaACCCAAATTGATAATTTaaataacc ttttttgcctCTAACAAGTCAATGTAAAAGCcctattattatatacctgt aggcaaaaacagccattgaataattcctgatataccatggctattatacc acggtagaactttcttttcaaattttgcattcaaagtttgatttttttgt cgctcttgttgttatcaaagaaattcattaaaaaatctaTTGTGAATTTC ATGAACaattttatgactcaaagtaattaagaaaatctttaaaaaagaaa aacattcgaacgttcgattatgggagtgttttatgtGAAACGTTCGACTA TTgacacaaaaattaatgttttgtttttgcctctaggtatgtaataaaac atatattcaataggttttcgttggttatggatttattaaccctcggtaat gaatattcaactcggctgcgcctcgttgaatattacatcacctcgggtta ataaatctcaataaccaacttttacccattgaatatctgcttattattcC ACTGTTTTTCCTGttatgatttttatttattcacCAACATTTAGGAGTTT TTTCATGCACCTGCAATAAGATTTTCAAGTTAAAATCCAGGAACACGTCA TCTAGATCAACATTCACTgggtttagtttagtttttagttttagtttcaT CTCTAGCCCCTATGGGGTTTTAAAGTCAATGGTAGCATTAGATTCTGCTC TCTTGTCAGAGTAAACCAAAGGGAAAATCAGCTCAGGAAAGTCCAGGAAA CGCTGGATGAGAACAGAACAATTACAATTGCCTTACCTTGAATTACAATT GTGAAATAAATCCTGATGTAATAGCTGATAAACTTTTCAAATACCAATTT CcacttaaaatctcaaaattaggtCAGCTTTACGGTCCATGGGTTTATAT CCATGATCCTGGCCCCTCATCTTGAATCAATATATAATTCAAGATAGCTA GGGAGGGTATTTTTTGCCAGCTAAAATGTCAATTAAAGATCATCAATTTA CTTACTGccatggcatggaccaggggtttaggtaccccctaagaaaatag gtaccccctgaattttaggtacccccaaacaacagacgttattaggtacc ccctgtgattggtaccccctgtgacttgagtatatgtcaagaaattgtat atttttacaattaaaaagaataatgatagttagataaaagcaagataaaa tatagttcccaaTCCCCCAGATCTTACTgcataaaagttagataccccag agatcataggtaccccctgaaattaaaaaaaaacagtccCTAGCcttttc aggaagattttggttgtagtcccccctgcgggctggggggggggttcatg ccaTGTTACTCTTTTGTTCATTCAATATTCTAGATATtcaattttgcatt tttaactttaacattttttaatgttcTGGAGGAGGTTTTCTGGCCATTCT GTAAAATGCACTTCATTTCTCatcttcgttttcaaaatttcaaaatattt catagGCTTTTTAAAATTAACCCATTTTCAAGTGCCACTGGTATCATATG AAATTCCAGTTGTGTAATGGTTGATCGTGACTATtatctaaaaaatgatt tttatttgtttgCAGGTGGCCATCAAGATGATCGATAAAAGCCAGCTGGA CGAAGAGAACCTGGCCAAAATTCGTCGAGAGGTTCACGTCATGAAATTGG TCAAACATTCTTCCATCATTCGTTTATATGAGGTAACCTCATCATTATTT TCGAAATGTAGGCCATGATGTTTTTAAACAAATACCTTGGACCATACCAA AGGTTtcattttacaactttttaagTCAGCAGTGAGGTTTCCGATGTCTG TCAtccacaaaaaagtttgcttccctttaaagaagtttttattatcaatt tgTATTTTAGGTGATGGAAACAGAAAGATACATCTATTTAGCGATGGAAT ATGcatctagtggtgaaattttcGAATTGCTTAAGAAAGAAGGGCGAAGG AATGAAACGCAAGCACGACACATGTTCAGACAAATTATTTCTGCTATGGA ATACCTCCATCAAAAGCGTATTGTACATCGTGATTTGAAGGTAAGCAATT CTCATTAATGACCCTAACAGTTTCTTGGTCTGAAGATGGAAATTGGTCCT GTCTGGTCCAGTTTGAATTGGGAATTAGCTTCTTCGTCTCCATAAAATAT ATAACCAAGGATTATTAGCAAAATAGAAAAttgttgtataattttaaata cttttttatcatAACATTGATTAGTAGAAGTATTTATTCATGGatcttgt tttttttccacAGGCTGAAAATTTGCTGCTAGATGAGAATAACAGAGTGA AGTTANGTTTTTTTTCCACAGGCTGAAAATTTGCTGCTGGATGAGAACAA CAGAGTGAAGTTGGCAGACTTCGGTttcagtaatatttttgacGTTGGTT CCAAATTGAAGACGTTTTGTGGAAGCCCTCCTTACGCAGCACCAGAACTT TTTGAAGGAAAGGAATACTATGGGCCAGCTGCTGATATATGGGTAAGTTA AAGGTTTTTATAAACACTACCTCTCTTTCTTATAGTTTTGTACTGATCTT TGCTGTAAACATTgctccccagggggggggggtacttagccaaaaatggg tgctgggtgtATGtgtggacggtaagggtcggcttttcacctttcaaagt ctctctaagggtcgcaaaaatcgGAGAGTTTagaattagtctctctaagg ttaggacttttttcaaaaatggtagaaaattttttttaaaagtctcTAAG GGTCAACCTTTCAgctaaaatcagtctctctaagggttggttttcggggg gtcccgtccgcacatacccctcatccgccaaccctagtacttCCCCCGGA TATTGCCTCAATATAATTGTGAAAAAGCTGataagaaagtttttttatta ttcttaACGAACATCCATTTATTGTTTACCTTTTTGTTTGTAGAGTTTGG GAGTGGTTTTATATGTGTTAGTATGCGGAGCGTTACCGTTTGATGGAGAA ACGCTACCGGATCTTAAACGACGTGTTCTAAATGGAAGATTTCGTATTCC TTACTTCATGTCTTCAGGTAAGCCAACTAGGGAGCCCATTTGCGCTTGAA CGTACATAAAGTCACCTTTTAGTCATTTTATGGCTGGTATAATTCTCTGC ACTCTTGATTAAGAAAGTCAGTGCCCTATCCCCCTCAAATGATATGATGC CACGAGGCGGGGAAGCTGCGTGTGTTCAGGTTCAACCGGTTTTGGATGTA TATTTCATGCTAATGTATTTACCTGAAAGCTGTGCACTGTAATGCGCTTT TTTTTCTACAGATTGCGAGAATTTGATACGTCACATGCTTGTTGTGGATG TCAACAAGAGATATACCATCAATCAGATCAAACGTGACCGATGGATCATC CAGGGCGAACCTTACGATTTCTTGGAAGAAGAGGAGGAGTTCAATGATCC CGTGTCCGAAAATTCGTCCGAAAATGAATTGATATTGGATGACGAAATCT TTGAGCAAACGTGTCAAATATTGAGAGATGAAGAACCTCTTAAAATTCAA GAAGTGAGTTTGTTTCTCTCATAATCATCTATTGCATTTATGAAGATCTT GAAAATTAAATACATTAAACATTGCATGTTGAAAAGTTTGATAAGGGACA TTTGGACATACATTCATATCCTCTTTTAAAATATGCATTCTCATTGGTTA ACTTTCTTAactttgccaaatattttgtctagTTTTTGTTTCCCTCTCTG TTTTTCAGTCTGTGCAAAAGAGGAAATTCGATGCCATCTACGGTCTTTAC CACATCTTACTTGATCAGAAGTTGAAAGAAGAAAGAGATTTGTCATTGCA ACGTCTTCAGCAATTACATCAATTACATCTGGTAGACACGCCACGATCTG ACCACGAAGATGACGTCCCCGGTGAGGAGGAAATGTCTAAATTCCTCCCC TCTAAACCCATGAAACTGGAAATTGAAGATGGGCGCGAAGAAGAACTCTC GAGATATTTGTCGGGCGGTGGGCGAAGGCGTGGAACCATCGCTGTTTCTC ATTTCAAACAAAACAGTGGTGGTGGAGATATTGGTATTCCGAAAATTTCC ATCTGCCGTTCGCCGAGTCCCACAGATGATAAGAATGAATTGCAATACAA AGAGAAGTATTTACCTCGCCCTACTGTCTTGAAAGTTCGACCCACCTTTG ACCGTCGTGCTTCCGATGGGTCCGCAACGTTACAGGATACCATTGCACAA TTCAATTTGCATCGAAGTTATTCCAAAGCGACCGGTAGACGAAATTTGAA TCAAGATGGAAGTCGGAATATGTTAAGTGTTCCGGAGAATGATACGGCAG GCTCTGAGTCAGAGAACGAACATGAAGCCGAGGTCTCCAATTATTTGCAT GGTCGAGGGAGACATCAACGCCGCACGCTCCCTTGTTTTCCAACCACCCC TGAAAACGAAGACGTGCCTTCGAAGTTTTTGCGCGCGGTCAAACCGAACC GAGCGTCGCCCACACCATACACACCAGTAGTGAACGATCCGCGGTTGAGA GAATTGGTACCGGGTACTAAGAAAGAAACTTTAGGTGATCTTTTAGAACA ACATAAACTTTTACAAGATCAATTTAGTACTCAAAGGAGAAGTTCATCCA ATCACATTCGGGAGAACCCATTCCGTCATTCGTACCCGTTCAACGAACCA CCTCCGCCCGAACAAGAACGTAATACGGAGTTCGCTTACCTGCGCAAGAA ACAAGAAGCACAATTAGCCGACCTTGAAGTACAATTCGCCgttcaaaaga aaatcttggAAACCAAAATGCGACAAGAAAGGCGGGAATTTTTACGCAGA GCTTCTGAAGGTGCCCCTAATCTAGAAAGTCAGATTCAAGCGTTTCAAAG AAAGCACTCTGCTGCAGTTGGTGGGACCCCTCCCATTGCTCTAAGCTCTT CACCTCAAAGCACCAATGATGTCTTACTGCACGACGAAATGCAGAAATTA AATTTAATGGCCACACCACTCATGACGTCTGAACTCCCCCCGCTGGATGC ACGCCCTCAGTTCCTCCCTGGCTCAATGGATGTGGATGAAGAAGCAAATA CTCATTTCAATAGATTCGGTCCACTACGCCCTTTGTTTAACAATCACACC CCAGCAGATGTCTCGCTTCTCCCAAGACCTAACCCTTCTTATGGCGCAAA TTTTGGCGGAGCGAATATCCGCCCCAGTTTCCCAGGAATGGACTCTCCGA ATTTACATGACCCTTTCATGAGGAACGGCCCTCCACCTTCGGAAATAGAA AATATCGGGAATGCTCACGAATCATTGAGTCGTTCGTTGAGTTATGATAT GACATTCGCACAAAGTATGAACAATATTAGGAAACGTTTGATTGTGGCTC TGGAAGAAGCGAATGTGGAGTACGAAAATTCGGGTGATAattatttttcc ctttttaaaGATGGCTTACAAATGGAGGTGGAAATCAACCCTGCTGCAAA CTCCGAAACAAATATTGAACACACCCTGAAACTACGTCGCGTAGGCGGCG AAATTTGGAGCTATAAGAAATTAAGGGAGCAGATATTTCAAAGTTTGTGT CCTTGATGCCCATGTGACGTGGCGGCCGGTGATTGGTTACTTTCGGTGAT TTGGTCACGTGATGCTTTGGGTGCATCATTAGAAAATAAAGTAGTTATAT TATTATTAGCATGTTTACGAATCGGCTTTCAAATTATGATAGTAGGTGTC TTTATTTCTCTTAGCTTTTTACTCTTGGCTTTTGAGTTTGCTTTTTTAGC ATAGCGCAACAGATAGAGCGACACAGGATTTCTTGAAACTTTTAATTTGA GAATTTCGTCAGATTGGATATCAGTTTTCCTGGTTAAAAGATGTTTGGCG CTGACTTTTAGATGActttatattcttttattttcaattaagAGGAGAAT TTCTAATTATTTAAATATTATATCATTAAGAATTGTAAGAAAAAGTTtag aattagacaatttattttttatgcgCTTTTTATTTTAGATACCTTGATGA ACTCTTTATAAGAAAGTAGGAAGATATTTTCCTGCCACCCTCCCCCCTCC TCCCCCATCTAATCTAACCAATTTATTTGTTGACAAACATCTTGAACTTC TTCAACAAGAGAAGGATGGAACAAACGACAAACAAACGAACGAAGGAACT TTGTACATAGCATTTTCAATTGTATATATAAACAACAACagaatgatgat aaaacaaccCTTCATatgaataaaacaaaacaaaacaaaact
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005156TCONS_00005156Clytia hemisphaericatranscript
TCONS_00005157TCONS_00005157Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005156-proteinTCONS_00005156-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:706316..717957 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.3 25.42 10.11 4.98 49.83 39.41 35.42 36.53 15.57 28.53 22.5 14.22 20.71 14.53 13.02 14.49 19.57 21.82 19.43 31.95 17.85 17.07 25.01 26.29 34.26 31.34 25.48 19.54 23.61 25.31