XLOC_002942 (gene) - C. hemisphaerica

Overview
NameXLOC_002942
Unique NameXLOC_002942
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000051:757254..762112+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002942 ID=XLOC_002942|Name=XLOC_002942|organism=Clytia hemisphaerica|type=gene|length=4859bp|location=Sequence derived from alignment at sc0000051:757254..762112+ (Clytia hemisphaerica)
gtTTAATCTTTCGCACCATCGGGCGCTAAAAGTGTCCATTTTTGTTTCCG
AAACTTTACTAGTTTTTTCgatccaaaaaaaaacttttataatctttcag
tttatttaCAAAACTAAAACATGTTAAATTTTTGTGAGGGACTTCACTTG
ACTTTCCAATCCTTTCATCTGTTTACTTGTTGTGGaaagtatttttattt
tgtttgcatATTGGATGATATTACACCATCATAACAAGAGTTTTGGAGTG
ATTggtttataaaaaactagacaaGCATATAAAAGCCAGAAGACACTCAA
AGTGCATTTATTCGATTTGAAATATATTATCAAGACAGAAACTACATTTA
GACATGtggttttttgaaagaaagatggACAAGTTTTTGTACCTATTGCT
TGTATGGCTTGGAATCCTTTGTATTTGTAGTGACAGAGTTTTTTCGGCTG
GAGGTAAGCGTTTTTCCTTCTGGGTAGTGGTACTTGGTTAAAAACGGGTG
ATGGATATACGTATTCGTATTTTGTTTTTCATGAAATCAAAAACGAGACC
AATGATACTAAATGATGCATAAGATTCTTATTTAAGCTATAGAAAGGAAG
CTGTGGCAGTTAGTGTAGGCTATGGCTAGGGTTGGTCAAATATTTCGCTT
ATTGACTTATCAtggttattttattttcatatttttgttaGATAACAAAC
TGGAATTCATCGACAAGAACATGCCACAATTTGTCGTCTATCCATACGGT
GATACAGCAATTCTATATTGCAATGCGACCAGTACTTCACCTATCCGATA
TAGATGGTACAAAAACGGTAGAAAGCTGAGTGGTAGAAGTTCATCTTTGA
TAACCAATAGTCcttatttgattttcaaaggTCTGGTTTTAACAGATACG
GCGACATACAGAtgtaaggcgaaaataaaaggaatgaaaattgaacatga
cTTTAAACTGATTGTCAAAGGTATTACTTTTTacatttaaccctttaagt
gccaatatAGGATAAATACAACATGGGTCATTTAAGAATCAACGCACATT
GACCATTCCATCCTGCCAAAATTTGCCATCCTAATTTTTTGCCCaacttt
ttttaaccctttttaaaaagtaatgtTAAGACTCGGGCTAGTGAAAAGTC
GCACGTAAAACAACAATACATTCCCTTTAGAAAAAGTGGTGAAAGGACCA
TACATTGACAAAGATGACGGAAATTATGAAACCGTTCTGACTGGCTCTAA
TGCTTCTTTACCATGCGATGAAATCAGAAGCAGCACTCTACCCGATTTCC
GATGGTTGCGATGGAACGGGGCTGTCAATCTTaccattttgaataaaatt
gcTCAACCAGGAAACGGAATCAAAATTACAGAACTTGAATCAATGGTTGA
AATCGTACCAGCAGACAGATATCGGCAAGTATCCAAGAGCAAAAATGGTC
ATAGAGTTCATGGCGTGGAACTTATGTTTCCCAAAGTGACGGTAGCCGAT
CGTGGGTTTTACACGTGTTTAGTACTCAACCATATTGGATACGATTATAA
AACAACATATCTGAGCGTGGAGAATGCAAGTAAGTTAATCATATGCAATT
ATTAACTTTACCCATTAAACGCTACTAAAGATCCTTGAAATCAACTTCTC
ACTGATTTTTTGACAATGCCTTTCATTTTAATAACCAAACCGTAACCAAC
ACAGGTTTGACGAGAAGTTTCACGGGACAGTGAAAAAGACAAAGAGAAGc
tgttatattttcaaaatttctatggCACTAATGGCTCTGcgaatttgaaa
aactttgctgTGTGTGACATTTTTTATGTCCACCCTgtatatacagggtg
tcccgaaaaaaatgtATCGAGTCGcaccacttctatagaaagaaagttct
tgtgtgtgtttcactaaatttgcaatgtttatcaaagtttatcgatactt
tttttcgggacacactgTAGTAGGAGGTTTGAAGTTTTTTTGGGTGGAAG
TTTGTTTAATTTCTTCAATCTCGCTATAGAATGAAGTGTGATTTTTGAAA
TACAAAATACATTTTCAGATAATACTTTATTATTCCGAAAACATTAGTTC
CATTTATATTGAGACGGAAAAATCATCTGAGATgagtagtttgtaaaatg
tgatcggtggaggagatcctatttattgaaacatgaatggaaatTACACT
CCTCCATAAAGCTGATTTCTCAATTTGCTCGTCTCAGACAAactaataca
cccctgtctcacaaccccggtggaacattttcccagtggggataaaaatt
cctatcgaaattcaaatggggatataaattctattgttccaaagttaaag
aatccagtggggatggttttggagtgcagtttttaaacattgattttCAG
ATATTGATGGAATCacagtcaatttcccagtggggcttggatcccagcgg
gtctgtgacacaggggtgtactaATTGTCAGGGGTGTATTAATGTTTTCA
TCTTTTTATTTCGTCTTTCTTAGTCAAACCTGTGATCCAACGGATTCGAT
CAAAACTCTTCATAGCACAATTAGGCACCGATTTCAATTTCCCAGAATGC
AAGGTTCTTTTCCAATCAAAACCACCTGCTAAAATAACCTGGGAAAAGTT
ATTCAGCACAATAACCAATGAACGACATGTTATTCGTGGAAATAGAGTGA
TGGTAAAAAAAGTGCAACATTCAGATGCTGGATATTATACTTGTATTGCA
AGAAATTCTGCTGGTAAATCTTTATATGTTTAAAACGCTGCTGTCCTGTT
TCCAGTGGGAAAATCCAGGCGCATTCCCCTACCTTGGGGTAGATAACTGT
AAAAAAGGGAACCTCGGGGTCACGCTGAACTGCGGTCGCTAGCTTACTTA
CTTATCCTTAGCGTAAAAACTATCGGTATTAAATTTTGTGattcaaaaat
gttgttttggtATTATCTTTCAGAGttctacttttcttttgattttgaaa
cCAACTAGTTATAAATTTCCAGCCTCAGAACAGATTTTCATTCAATGTaa
cattttttatgaattttttttctattttaattgGTTTATTCACTTTTAGG
CGAGGACCAAGTCAAAATACTGTTGAGAGTTTGGCCTTTAGTAATGAACA
AAACATCAGCGGAAATCATAACTCGCCTCAGAAATGAAACGGTTGAAATC
TTTTGTTCTGCATACAGTCACACGCAAAATATGACCGGAACAATCGTTAG
AATGGGTGTGCCAGTTCCAAGCGCTGTTGAACGCAAgaaagataatttgt
ttttggTGAAAGCTCAAGTTAATGAAGATGGAACTTATGTTTGTACTATA
AGATATGGGAATGAGAAAGTTCAAAGTGCAAGCTTCGTTGAAAAATTCCA
TTGTAAGTTCTTTTTTATTCAGGCACAGCATATTTGGATTTAATCTTTTA
TGAAGTAGTTCTTTCAGGCTGGTGTATTAAAAAAATTGTCCCTTTTTTAG
TTAGTTCACAAAGTGTACTATGCATATCATAAGCATTCGAGgctcaaaaa
attcattttgctaagcataatgaGGCTCACAAATATTTAccctatgctta
taaaaaggaGGGGAGGAGGAAAGAGCTGAACCTTCCCTTAGCACAGGGAA
TAGACTCAAACTTAACTTAGGGTTCACATCGCTAAAGAATGCTAAAATAA
ACTAGCAAGAAAACATTAGGTGGAAATGATAAACTAAATATAATTATGAA
TAACATGATTAACAATACTGTAACACGATTCAAAGCTTTCCCATACCATT
CCATACCATACCATaccaacttttttcaaaaaaaaaaagcaaaaaaaaac
gtgtagatattattaatttttaagttcaAAGACATAATCTTTAAGACTTT
AGGTTTAATTTTGGGTGATCAAAAATTGCGATAAAATGAATAAActttga
aatatcttttcatttttttcagtaaAATCGGTGATTTTAAATTCAACATC
AATTGAGCATCTCGGCAAATGGTTGAAAGAATCCAAACAATTGGGACGTT
ACAAAGCATGCTGGGATACAAACACTTATGTTCCAAACATCAACTCTGAA
GGAATGTTTTTTACTAAGAAGTATTGCGGTGGAAAGAAAAACACGATTAC
TCTTATACAAATCCGAGATAAATGGGTTTCGTATTATCGAACCCCGAATC
GGGATTGGGACACAACTCTTGGTGGATTCACAGAAATTTCTTGGACTCAG
GGTAAGTATTATAATACTTAAATGCCAGGAGTTTTCAATGTCGATTTCTA
CGGGGCTCAAGTTACTAATTGTAAAAAGTCTACGTAACTACCACACATTT
CAGAAAGCACAAAATTAAAATGTTGATCGAGTCATTGATTCGAAATGTTT
GCTGAAGATACCAATTTCATGTCAATTAGATATTCTTTTCAAAGTTACTA
ATATACTCCTTTTAATTTCTTTGCAGGTACAAAGGCAAACAGTACCAAAA
CGTTTATGTTTGAATTTAACCCTCCAAAGAAATACACGCCGCGTTTCGGT
GGAAAAAATGCGATTTGTGGTTACGGAAGTGGCCCATGTTTTGGTAACAA
GAATCTTTATACAGCCGGATTTCCTCCGTACGCGTATGGGTCACGAGGCA
ACATCTGGAAGATAAGAGGAATATGGTATAGCAGGGCCGTTTTTGATata
ttgaaattgaattttgcGCAAGGTTATCCTCGAAGAATGGAAGTGTTTTA
TAGACTTTGAAGAATAAAAGCAGCGATAAAAACTAACCTTTTATGTAGTA
TTTTGGTGGGAAGTTGATATTTCAAAttaatcaagaaaaaaattaaataa
gagtTATTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005167TCONS_00005167Clytia hemisphaericatranscript
TCONS_00005168TCONS_00005168Clytia hemisphaericatranscript
TCONS_00005169TCONS_00005169Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005168-proteinTCONS_00005168-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:757254..762112 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04	0.07	0.04	0.15	0.17	0.11	1.31	1.22	2.4	2.41	5.03	4.83	10.14	9.36	4.7	8.4	4.67	2.69	15.3	21.2	3.61	4.34	3.49	3.31	8.49	8.76	0.59	0.35	4.96	2.69