XLOC_003082 (gene) - C. hemisphaerica

Overview
NameXLOC_003082
Unique NameXLOC_003082
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000053:10126..15733+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003082 ID=XLOC_003082|Name=XLOC_003082|organism=Clytia hemisphaerica|type=gene|length=5608bp|location=Sequence derived from alignment at sc0000053:10126..15733+ (Clytia hemisphaerica)
ctATCTACAGGTTTACCTCTGACAATGCGTTCCTGCTTGTACCCTGTGTT
CGGTAAGAAGATCTTGGGACGATTAGGTGACGTCATCGACAGTATATCTA
TTATTTGTATGGGGTTCGGAGTAGCCACCTCCTTCCTGTTAGGCGCCATT
ATGGTGGTAGTAGGGTTACAACCTATCTTTCCTGAACTAGCTGACAACCA
GACTACAAGACTGATTGCGTNGGGTTCGGAGTAGCCACCTCCTTCCTGTT
AGGAGCCATCATGGTTGTAGTAGGGTTACAACCTATCTTTCCTGAACTAG
CTGACAACCAGACTACAAGACTGATTGCGTTATGGGCTGTCTCTATCATG
TCAATGTTTTCGGCAACGAGTGGTATCAAACTTGGTATCAGGAGGATGTC
GCAACTATGCTTCTTAACAGGTACAGTCAACTcttgcttattcgaacttc
tattatttgaatctttctataatccgAACTTAATCTCAGTTCCCGTCAGG
AAGAAACCCTCTTAGGATACTCTCTATAAATCGAATCTCTCTGTTATcca
acaaataagattccccgctCGAGTTCGATTTAGCAAGAGTCTAATTTATC
TGTTACATAGTTCTTTCGTCCCTGTGAAGTATGAAAAAGAGGGTTTTCTG
CCTTAgaattttagcaaaatattaaaaacaatctAGCTTAATTTGTCGTG
TCTATTTTACTTCTGAGAGGAAAAGATTTACTTTAACCACTGCTTTTAGG
ATTGTATCATTTCAAGCAAAGaatctttattttctatttttcgcATTACC
ACTGGAACATGATATCAGTAGGGATGTAAAAAAATGTCATATCATATCTG
tttaaattcaattcaattttggTGTTCACGAGCATTTAGTCACTCCACCC
TCCTAACAAGGGAAGATAAATAAACTCGCTTAtttttcgtcaaaaattga
agttACCTTTCGTTATGATACCAGTTTAATTCaataatatttcaatttca
GGAGCTTTATTCACATTAATTGTTGCGTTCAGTGACAACCTGTGGTATTT
ACTCAATCTGGCTGTTCAATCGATTGGTTACTATTTCCAATACCTCATAT
CAACATCAACATTCACAAGTGCTTTCGTTCAACAAAGAAATTATCCTGAT
GGCAAACAACAGGAATTTGATTGGATGCATAAAAATACCATTTTCTATTG
TAAGTTGAATTAATTCAGTACTACAgtacctccataactcgaacctctat
aactcgaatacctccttaactcgaacaattttgTATTCCCCCCGTGAGGG
TTCGAGTTGTGGAGACTATTTAGTATAAAGCTCAACTCTAGGCCTCATCC
CTGTTGAGATGGTCGATAGTGTATATCCTTTTTCGGGGCTTTCGAGGCTG
CCAACAATggaattaaagtctattcacgataagtgtgcactcttttttct
tttactgataacttttgaaggaattcttcaatttttataaatttggtatc
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAAATACCGAAGTGTTTtgacgtga
ttaccgaaattccgCACAAAAACAAGCCCATTTCCGCAATACCGAAatct
cgtacgccccccacttatagtgcaatttttcgaaattttttgcccttttc
agggcaaaattttttgcaatttctcaaattttacctcaaaatttgttatt
ttcccaaattttacaccctttgcactttttcccacttgctcacaaatcaa
cccttacagtgtactttccaaagtccaaaacacCTATCCTTAAGGGCtgc
acgtccggtaggtcacttacctggagtgcccccccccggggggtaAAAAG
CCATGTCACAAAGACAGAGGATTTATACAAATCGTTTTGACTTTTTAAGT
TTCTCATGACGAATTACAATACAAAATTATGACtatcatattattttttt
tcgattaaATATACTACTCACCTCGAGTTAATAAATCGCAATATCTATTT
AGTTGAAAGGCCATGAAATATCTGCTattatcattttcttctttttcttt
ttagggGGCTGGTGGTTAGGTTGGGCACCTTTGGTCTCTATATTTGCTAC
ACGGATCAGTAAAGGTCGAACAATCAAAAGTGTGATCGAAATTGCTTTCA
TAATCCCAAGTTTTGTCAATTTCATTTGGTTTGTCGTTGTAGGAGGTGTG
TCCATTGATATGGAAAATCAAGCCATTTCAATGAGACTCCATTGCGGCAT
GAACAAGTAGGTGGTCTCACGCACTAAGATAGCTcggtttttgaaaagtt
ttagcTACGCGGGacttattttacaaaataaGTTGGGACTGAACCTCGAA
AGTTTCTCAAAAACTTCTGATTTTTCTAATTTCGCATAAAATTGCACTCT
TGGACTGAACtgactttttatatttttgttttgacggCCCTACCTAGAAC
TGTTATGTGTTTACTTTGGCGGTAAGCATTGCTATAAATCCAGCGTtcgt
gtgaaaaccacgcgggtcaTGCAATTTACATAAAAAAGGAGTTCAAAAAT
ACAGCAAGATTTCATTGAAATACTATCTATCTTATTTTTACTAGAACAAC
ACGTGATGCTTTAGGAGCTCCTGATTGGCTACACAGTCTCGGTTGTATTG
ATGAAGACAAACGATTCTATATGGTAATCGAAAAATATGAAGATATCAAG
ATTATTCTTCAGATTATCGCTTTGATGCTTACCTTACTGTATTTTATCAC
GAGTTTCGATTCAGCTGCTCTCGTCATGGGCACCATCTCCAGTAACGGTT
agtcctttgttttttttctcatttttgtgaCTATTCCTTGTTCTTTAATT
AAACTACAACTTTGTATCAAAACCGCGACTGAAAcctgtccattttccta
atgaTAAAACGGTTCATAACAGCGAATGAGGGCGGCATGGCCGAAACGAA
AGATTTTCTGGGAAATAGAATCCTATACAAAGCGATGGTATTTTGTACAA
TCTAcccttttcgaaattttattcTTATTCTTACAGGTCTAGAGGAGCCA
CCATTGATTCAACGTATTTTCTGGTGCATCACCATAGCTGCTTGTACTTC
AGCTCTTATTGTTTATACTGAATTCACTGATCGTGCTGATGTCAATGCTT
TTGCTATTCTGGCTGGCCTTCCGTTCGCAGTTTTGATGTGTTTCTGTGCT
ATTTCACTGTGGCGGTGAGTTAATTATCATTAATCGGGAACTCTAGATAA
GTCCCCCACCCTCCCGAACAGTTAGCTAAAACATTTTCGCACGGGAAATT
GAATCAATCCAACTAGCTCCTTTTAAAATCAAACCCTTGGCAGGTACCAA
GATGAACGTTCTGTTTGAAAGAATATTCATTAAAGCAAAGGTAACATATA
CCAAACATGTATATTTTCATAGATTATTGAAAATGGAACCATATTGGTTT
TACAATGAAGTCGCTCACTGGGAAATGATTTATGGTCATATTGATGATAT
TCAAATACTGAAAAAAGTCCTGTTAGCAATTGTTGCTCCCTGGTACTACC
TAGGGCAAATGGCAATTAAACTTAGCCTAAATCACCATGGCGACAAGAAT
GGTAACCATGTTGGTGAAGGACATCCGCCCGTGTCCGCCCAAACTACAGG
AAGTCCACCCTTATCCAACCAAAAACGATTTTTCGCGTACTTCAAATTTG
CTTTCCCATTCTACTTATGGATTGTTTTACTTCTTTTACAAATTCGATAC
CAAAACATAAATAGTGTTGGCTGGGCTGTTTTTGTCGGGTTCTTGGTCCT
TTCGAGTCGCATTCGTAGAGCTCTTCGTCGCCAGTATCGAATACAAGGAA
ATGTTTTCGAAGATATTGCGATCATGGCGATTTTCCCGTTTACCGTGGTC
CAGATGTATCGACAGGTTACTACAAATTATACTTTCAAATCTTGAATTGA
CTTTTCTCGTACCCCATCGTATGAGTTTTAGGAAAAAAGGATCAGAATCT
AAATCAAATTTCACTACGGATGTTATTTGCCATtgcgaaaagattttttc
aatatgTAGTTAAATTcccttttcatttgaaataagtttttcttttttcg
aaacTACGGTACTCATCGCCTGACCCATGAAGTTATTGCCTTTTTCTCGC
GTCATTTCAGGTCACTTTCGGTGAAAGATCAATCGAAACTGGTGGACGAG
CATCCAGGCTAAACAGTGATACCACAGAAATGAAGAACAACCCATCCACC
AAAAGTAACAGAGGACAACGCAATTTAGCCTACATACAGGATGAATCATT
TTCGCCTGAATCTCCGCCCATCTATCAATCTGGTGAAGATTTCTTAGCTG
CTTAACGTGTATTGCTCTGCAGTTGGTActcaacgttgttttaacattcA
CACAACATTATAAATTTGGATGTTAAAAGGATGTGATTTAAACTTTCGTT
GATCTTTAGATGGATCAATGCAGTTCattcaaacaaatttaaaacgaTAT
TCCATcgtttaaaagaagtttttctattgaaaaatgataaaaattgatAC
TCGTCATc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005408TCONS_00005408Clytia hemisphaericatranscript
TCONS_00005409TCONS_00005409Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005409-proteinTCONS_00005409-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:10126..15733 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.4	0.54	1.88	2.21	1.39	1.43	0.39	0.42	0.31	0.7	0.42	0.42	28.97	20.88	3.87	4.64	1.18	1.33	23.96	26.49	2.46	2.57	23.89	37.61	21.4	12.19	3.71	5.71	1.48	2.16