XLOC_003250 (gene) - C. hemisphaerica

Overview
NameXLOC_003250
Unique NameXLOC_003250
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000059:307649..313609+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003250 ID=XLOC_003250|Name=XLOC_003250|organism=Clytia hemisphaerica|type=gene|length=5961bp|location=Sequence derived from alignment at sc0000059:307649..313609+ (Clytia hemisphaerica)
TAAAAACATGTTCTTATGTTATGTTTGTGAGTATTGTGAACTCGACAAGG
TAaataattttatggatttttattttgaatctgtgtCCAATTATTCTTTC
GCGGACACATGGACATTTTATGGTATCGAGAGTATAAGCTAGATCAATTG
GAGTAGGTAGATAGATGTAGgtagtcgatattttacgtggatagcccagt
aatctagtaCTTATTTCAATTGTTATAACTGAGTCCACGACCAGCctgct
cggctatctatgaactgaacgaaaCAGTGGAAGGGACGGAAATTGATGTT
CTTAATTCTTTTAATATCCTTTTTTTCGCTCAAATGTCAGGCTTGATATT
TTTATATGCGTAtaagatatttttaaatttaaggTATCACTGTTAAATTT
AAACATATGCTAGGGTACCTAAAGAGTTGGATAATCTCAATGTTGGTTAC
AATTAACATGGTTGGAAATTGTCCGGGGCATGGATTTCCCAGTGGTGAAC
TTGCAGGAGGCATTTTCctggtagtctgaatcgcagacctctatagatac
aTTGCCTACAAGAAACTCTTTTTCACTAGAAGATGATAGCAGAAGCCTTT
TCCTGGGGGACAAATTTCCGTAGGATTAAGCAGGGAACAATTTTACGGGG
GCAAGATTCTCGTGAACGAATATCTTAGAATCTATTTTGCTACCATAAGG
AAACCAGGCATCATTATCAAACTGGTTCCCTTGAGATTGGTTTCCATATA
TTAAAGAgtaaaaaatttttcacttaaaggAAAAATCAGAGGTTGCGATG
ATACACTTTGCCAATAGATTAATACAATGTTCCTCAGCCAAATCCCAGTA
TAACTTTCTTcgaattttatgaattttaacaAGTATTaggaaacaataga
aatttgaagTAAGAAACAtgtaaaaacccatttttaacCGAATTATCATA
TAGCTCGACTTTGGAAAAGATGCGACAAAAAGATTTGGCGAATGGATTTC
AGTTCTTCGAACGACACAAATCATGGTTTATAAGCTCCATCAATTCATCA
ATGCtagcaaaagtcttcatttccATACTTTCTTCATCATAACACAAATC
GTAATCGTGTTGTGAACGAAACAGACGGTACCGATATTCTTGATTACGTA
GAAGATAATTGTAGTAATATtagcaatacaccttttcgaccgtagccgcc
aattaccgcgcgggcatttttttgtccgttttaccctaaaaccatcccag
tctTTTTTACATACCTacagacaatagaaaaaagtgttgaaaaaggaTCG
GATAATTGGTGCgggcctgaccgcgcgactacggtggaaaaggtgtatta
agGACCATAGTCGGCTAAGTTTTAAtaggtaattaactttttttctttcg
aagttttttcaaactgtacgcaaagaattgaactgttttcgatttttggg
aaaaattttctaaattaatgcatcaaaagttatggctgtttttctatgaa
aaattgggatggaaaattagtcaaaaagcactattttcaagattttgaag
caaataagatTTTAAATAACTAATTTTAGTTCGGTAAGAGATATTCCATC
TACCgccaaattcttttcaaaatgttttttctccaCCGAAAATAagcttt
tcaaagttgaaatactcttcttcgcaaaagtcttcattttcttcttcatc
aaattttttcattgtgaTTCTTAAATTTCCAGTCTCACGGATAATttgcc
taacagaaaatgtataacgtgccacagttttgtgtgctacatcaagtaga
actttatattttgtaagtggcaaatattgaaaattcaatatggtcagagc
ccttaagccaTCCAAATTCACCATCCAGTAGACGGATTTAAATATGTTTT
CGAGTTCTTTTATAGTCACGATTCTCTTGAAGAGGGTTATCCCCCAACTG
CCCACAAAGTTAACATATTTCCCACCTTATGAATATGGTCAACCTTCGCC
TTTGTGATGGCTGGTAGGATCTTTTTGATGGGATCTCATAGTGACTTGTC
AAGTTGATAAAAGTACCCAATGTAAGATCGTTTTATCGTTTTTTTTGCCT
TTTGAGTTCTTCTTTTCCTCCTTCTTTATATTGCAAGAAGCCTGGTGATA
GATGTTTTTCTTGCGGGTTTTATTGGCCCATCATCTGGCTTTTCTTTAAC
TTGTCGCTGTTCGTGGTACTGCACGtccattttgaagaaaaagtagCACT
TTTTTATACGAAGTGTACGAATTGCGAATAAACATTCGACTTTTGCTATC
TTGCTGGGCTTTTATGCCGCTTTGGCTTCTTGTTTAAATTTAAGATCAAC
CAAATCCTCAATTTTCGCAACGGTTGCAAGAGGTtgagcaaattttcaaa
actagaaaacttattttttattcaaaaggtAAAATCcggagttttcaaag
aataccATGACAGTGCTAATAATTAATGTTTTATGTTTATCTGTTGGGTT
CCAAAATTCACAATTTATTTCAGACCGACTGATTTTTCACCAGAGTTTAA
AAATATGCTAACATTTGAGGATTCTTTCTCTAGAGTTCATAACGTTACTG
ATTTGATTTGGGTTACTGATACAGCAGGATTATCGGGAGGAGGACCTGGT
AAATTTTTTATGCGGTCTTGGATCTCTTTTTTTGCTATTTCTATTTTGAA
TTATTTCCCTCCTGTTTTAGACCAAAAAtagagaacaaactatataaaaa
cataaggcttcgatggccaaattgttaagaacattttaaggctttgtagt
cCCTAGaacactcaatttcttaggaaaatgagcaaaaatactcaaaaaaa
attgtgaaaataagaacatgttaagaacatttttaggattcaaatttttg
gatgttcttgtaaaaagaaaaacgtgtgtTTTTTAGGATTCTTACCGTTT
CAATCCTGAGATTGCTTATATTTTCAGATTTCTAAATTATTCTgaagtgt
tttttttctataagaccTACGAGAGTATTCTAAAAAATGGGAGTCTATCG
TTTAGTATGTGCATATGAAGTGAAGTGCACTGTAGGAGCTCAATATCAGA
CTCTGAACAGGTGTCTTTTGAAACTGAattcaaaatatatattatcTTAT
AGATTCATCAATAGAAAGATTTTTGTAGCTGAATGCAAAGGCGTATGGGA
GTATTCATATAATCGATCAAAAAAGGGAAGGAAACGTGTTTTTAAGAaat
atattattattttatcaatattcaaaatctttttcatattttgcatTCGT
ATTCATAAAAAGCGTACTACGATGTACTATTATAAAGCACGAGGGAAGTT
TTGTTGTGGTTTCTAGAGTTACAGAGTAAAGAGAGAGACTGCAGTAGATT
ATTGAATGGTTTTGAagttttgacgatttttttatCGTAGTATTCTTTGT
AGAGAGATTGAAAGAGAGAAATGGCATCTCTAATTGCTCTAAGTCGAATC
TCGATGATTCTTTTGTTAACTTTCTAGCTTCCATCCAGGAGCTTTGGTTT
TAAAGTCCGGGGACACTTATATTGTCTGGTCCACGGAATGTGCTgccttt
aagggctctgaccatagtcagaaaattgattttagtatctgaaacataaa
agttatgttttaaattctttaacacttttaacaaagaattgcctttataa
attgttttttaatcaaatcccttaagagtaattaagaacttgattgcaaa
aatgacgttatgaactttaaaaagacgttaataatatgttgcatcacctt
cttttataaaaagtgctaagttttaatgggtaattaacctttttgtttcg
aactcttttcaaactgtccgcaaagaattgaactattttaaattttgcgg
aaaatttttctaaaaagatgtgtcaaaagttatgactgtttttttaagca
aaatccagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNttcttcaaaatgttttttcttcgccgaaacta
agctcttcaaagttgaaatactcttcctcgcaaaagtcctcattttcttc
ttcatcaaactttttcaatgcaatttttgaattttcagattcaggaatag
tttgtctaatagaaaatgtataacatgctacagttttgttggttacatca
gtcagaaaacacattttaaacacggcaattatgaaaaattcactatggtc
agagcccttaagggaaGGTTTTCcgagaccctcgaaatgcaTTGTAAGTG
TGTACTTTTGAGAGATTGCACTATAATCTGATCTTTTTTAGCTGCATACA
CCGTAAGGTCGGGTTTGGGAAAAATCTGGATGTATCTTTATATAGTATTT
TTGGACTCGCACCGATTTTGATTTGTTTAGCACATTGTGTTAACATCTCT
GGGCTCATTTTCAGGTGCCTTCAGcgaaataagatatgaaatcaaactac
cCTGTAAGGGTCAAAAACGTttggtaaaatgcactgtaagggtacctttt
caaaGCTCAAGGGCGGCACTGTAAGGCCGAttctgaaaataactttttgg
cGGCACaagccgtcgtttagaaatcgagtgccccccgggTTTTAAAGAGT
CGAAGAGTCGCGTATCTGTTGATTTCTCGAATCAATCATATTTCTTTCAA
TGGACAAATCGGTGGGACCGGGTGGAACattacaatatttttattttact
ttttagcttCTTTTACAGGATTTATGGATCAATTCCGGAGATTGTAAAAT
ATGATCAACCACATACTggtgacgctctctaattctaTCTTtaaggggaa
tcggattttcatcggATAAGGGAACGTATTGAATAGATAGGTTTAAATCA
GCCATTCcataaagttataagaaaaaaaaaaaaaaaagctttatttttat
ttcagcaAAAACTTTTCGGTAAAACCACCATGTATGTATTGAATAGAaga
acgtcgtttatgagagttttacCTTGTTGACGGTGACGGTGACTTGAAAC
ATCCTGTCTCCATGACTTGGTCAGAATTCTTCAGCCATCGTTGGCAAAAA
AGGGGGGTTAATGAACTATAGTTCTTTTTAAAGTAAGCCGGGGACCTATT
GTGTCTTCAATACGGCTAATTTGGCACTGAATGTAGAAAGATTGCTCAGG
GTCAGATTATGCTAAAATCTGCTCTCAAATTTTGGCCGAATTCCCGCCTT
TTTTTATAACTGTGCATTCGTAGATTTAAAAAGTGTGCCTCCCAAGTCAC
GTTTTAACCCTTCTTACTAATATTTCTGTAAACTCTTTAAAAGTCCAATA
ATCCTCGGGTTTTTAGGCGATTTTGGAATTCTTTGAGGTCTTTTTATACA
CTTATTGCTTATATCGAGGTCAAatatttttacttctttttgaaACTATC
TTTGTAAGTAGTGGattaaacttaaactttttaTTTGACATTATTGATAA
TAAAGTCGATAAAAGTTTATATCGATTATAAAGTGTTCACAAGGTGTGGC
CTTTTTGAAGTTACAAAGAAGATTCTTTAGATGACGAACTGTTCTTGCAG
AGAGTGGTATTATACTTGTCACGCAAAGCGAGAGAGTAATGCAGTAGCGT
TTTAGATTGATTGAACAGAGTATGCGAGTAGTATGTATAAATCAATTAAT
ATTACATTGCGACAGATAAAATAAGAAATAGCGGTTTGGATCGAATTATA
CTTTCTCTTTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005728TCONS_00005728Clytia hemisphaericatranscript
TCONS_00005729TCONS_00005729Clytia hemisphaericatranscript
TCONS_00005730TCONS_00005730Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:307649..313609 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.07	0	0	0	0	0.03	0	0.11	0.09	0.06	0.08	0	0	0	0.15	0.22	0	0.05	0	0.05	0.28	0.23	0.97	0.86