XLOC_029767 (gene) - C. hemisphaerica

Overview
NameXLOC_029767
Unique NameXLOC_029767
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_116:3050..8792+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029767 ID=XLOC_029767|Name=XLOC_029767|organism=Clytia hemisphaerica|type=gene|length=5743bp|location=Sequence derived from alignment at scaffold_116:3050..8792+ (Clytia hemisphaerica)
AGGATTTTATGTCATGTATATATCTTTCTCTTGTTCTTTAGATTAACATT
CATAGTTACTATAAATAAACATATGAATAAGACATTCTTCATTCGCGAGt
ttccattgttttttttggaatctaaaagatgtatcacgaaatgaaacgtt
tttcaacctcagccgcgcgactattaCACAAAATTTGTGAATTGAGATCG
GTTTAAAAGAATACAACCAATCAAATAATTgcaataaaattgaaatcaaa
tatAACCCAGGATTTGCCGCTCGATTGTAATAGATTATGTTCACTCCAGT
CAGTCAgtacctttagccaaattaggaacatttttcttacttttaccaAT
ATATATTCCTAATTAGAAATcctattcctaattaggaagaaaaaaattca
aacttgtttgattgacactGTCAGGTTAATGCtgttcagaaaatttgaat
acTTCTAAATTCTACAATTCTAGTGGATTCTACGCACAAACCAGAGCAAG
TTCGGCTGTCCTCGTTCTTTTGCTAAAGAAATTTAACATATATGTACAAA
TGCAGGAAATTTTATCGATTAGCTTTGCACATGCAGGTAGTTATTCACGT
TGGGTGTTATTTTGAGGGCGTAACACCCACATTCTAGCAGTTGCTTAgaa
ttcaaatctttttttggaaaaatgatgCTTTGAAAAACAAACGCTCATCA
AAATCAACATGATGTTAAAAGATTGCACGAAGACATTTTGAACTTCAAAA
AACTTGGCTGCTAAGTGGAGGAGAGTGGGGAGTCTAACCCTTAACAGCCA
AATGTTGTTAAGAAAATTTGCAAGTCAAATGCCATTGGCCCCTAACTTTG
AACTTGAGTAGTTTCATTATTGGATCAGAAAACAAACCTGAGGCCAAATC
TAAAATCTGGCTAATTACAGCAATAATAATTTGCATAACTAATTACTACA
GCTCAAATTAAGATATATCCATCATACTTCAGTGAATGCAAGTCCAATGC
CTCGttcgttcgcaatggacttgtgtcgcaagggctcagtggaATCGTCA
GTTGCTGTGCGGCCATTCAATCGGTACCACATCGTTGTTCCGCTGTTTTG
ACAAAGTGCcaggattctcaaagtagcgcaagtacatgaCAGAACGAAAG
GGAGCTATCGAGCCAATGCTCACgaatgatcgaatacatttaacaattta
tcaaataattgGTAATAGCTAGGTGGGGAATTAAAATTTTGGTGTGTGAT
TTTCGATTTGACCTTTTGATAAGCTGGGTGTGAAGTTCAAACTTAGGCGt
gtgatttttattttcactattcTCAGCACAATTTCGAGAGCAACCACCTC
TTGCATGTTAATTTAGTTTTAAACCGCTGGAATTTGTTTTTTCAACGTGG
GATTTTATAGAGTGGTATTTGGCACTTCCCACCAGAGTAAAACATTTCAG
GGTCCTACGCGTACAACTACGGGAAACATGTACTTTCCCACCCTTTTAAT
TTGACTTCCCCACCCGTGGGAACTAATGACTTTTTCCTGTGTAACATTGG
CCATCAGTTTCTTTAGGAGGAAGTTGTGGACAATGGCATAAAAAAGTGAA
TCGTCAacactgctctaacttgggacaataattggtcgaaacatgggact
ggttgatatctggcctgtattttcacttgctcttaaatctctttgacaac
aaatttgttttgataactccaacaagtttatcaatcatacttattcgttc
ctcttagagtgcacagacacttgcgtgtgttccactacagatttttttca
tatttcaatttaaaagcctactcggtgcaaaagaaaaattgtgtattttt
caatacgccgttcattaaatCAAATCGAATGACTTTGGAAGTTCGGTTAA
ATTGTAGCTGAATTGCCGTCctatgttttgtcagatagtcccaaatTAGA
GCAGGTGACGGTATCCCTGATCATCTTTGTcaatttttcgtgtttttttt
atcaccatctttcagtagtattctttgtattttgattattgtgttgtttt
tttttcattttataggGCTCCTTTCAGTGGGATTCTGGAAATTCTGATAT
GTGGGGCTCAATCCTTGATGATCTACCAGCTGAATTATCAGACGATTCTG
AAGGTGGCAATTTCGTCAATGAACCTTTAGATTGGAAGCATGAAACAACG
GATTTAATTACAGATGCATCAGTGATTCAAAATGATGTTTCAATGCTGGA
AAAGACTGCTGCAGAAGTAAAGGATGAAGGTATGTCCAAAGAAAAATCCC
CAGGGGGTATTAGGGTTGCAAGCTGATGGGTATGTACCAACCGACTTTAG
ACTTTCAGACCCTTAGCAGGACTAAAAAGcaggaaaatttttgtgaattt
gagaacccttattgggactaatctGACCAAGATCTGACTAGGAACTTATC
TGACCTGATCATCTTTTTAGGGGtacaaagttgaaattttcctattttcc
caacccttagtgagactgaaattcgattttctgatttttctaacCATTgg
tgggactttggaagtcccaaaaaggtacccttaagagCGGCACATACCCC
TGCTCCATCTGCCTAAGTacccaaaaaaatacaaatattataCACAATcc
tattttgacaattttgtgTTTTCTTTCTTTACCAAAGATTATATGAAATT
GATTAACTAAGGCTAGTGAATTGCTTTTGAAAATCTGCCTGTAGGCTAAG
TTAGGTCTCAATTGTCGTTAATCCAGGTTAATCACAATATTGTGTTTCAT
ATTCAGTTGAAGAAGATGATTACTTGAGGATAAAAAACGAGCCCATGGTT
TCCATGGCTATGCTTCTCAACAATACAATAACATCTACACAAACTGCTAA
GACTCAAACCAAAAATGTTATAACTgtgaaaaatacacaaaataAATTGG
CAATATCGAATCCTCTTATCTTGAAACCAGTATCACTAGTTAACGGCTCA
AACAACACATCAAACATTCAAACTCACATCAAAATTGGAAACAATGTTTT
TGCTATCATCCAAAAAGCTAACCCAGCTCCAAAAACAACACTTTCAGTCA
CAACCAAACCTCAGACTTTGACACAAACCTCAAACAACACAAAAGTGGAA
ACCAATACCCTGAAAATCTGTCAACCAGGAGTTGAAGCTGGCAAAACATC
TTCCTTTCTTGATCACGACTATACAGAAGAGGAGGATTTTATGGAGACGA
CTGGTGTCAGTAAGGTATGTTCATTTCAAGGTGGATTGTCTATCTTATTT
GATGGACACAGTAGCACCCATTAGAACGAGATTTAAAATATTAGTTTGTA
CACAAAAAATGACTTATTTCATATGTACCTTACAACAATTTCCACGACTT
TTAGAAAGACAATAACTAATAGAAAGCAGACATTTAAAATTAGCTTTTTT
GCTCATTCCCAGTGAACGAAAAACTTTCCTTATTGATAACACATTGTTTT
GTCTCATAGGGATTTGGACCAGGTCTTGTTTTAACTGATGAAGAAAAGAA
ATTGTTGGATTTCGAAAACATTATCATTCCTGAAGATGCTCCCCTgacga
aagaagaagaaaaatcctTGAAAAGAGTTCGGCGTAAAATCAAGAATAAG
GTATTAggattaaaattttcacaaaaaaggtGCTGGTTCTTTATAAAACC
TTGaattatattcgaattataTCTATTCGAAACCTATTATTCTATATCAA
AATCACATCAACTAAGTTTGTGTCTTATTAAAATTGCGTCTTTTGTTTTA
GCAATCAGCAATGGAAAGCCGTAGAAGACGTAAAGAATATATTGAGAATC
TTGAACAAAGGTatttgaatttataaaaatgatattattgttataACTTT
TGTATTCAAAGTAACAAACAAGCTGTGGCGATGCCAACTTTTTattagaa
taatttttaaattgCTCGTTTATTTTTGGCTGTGAATTTAGCctcaaatt
ctaaaaataactAAGAAAATCTTCACAAAATAATGACTGGTTCTCAAAAA
AGAACGCCATACTgagttttaaattttctaattaaCTGACCTTTATTTAT
ATCATTTTTTCAGAGTGAAACACTGCACAGGCGTCAACCATGGCCTCAAG
AAAAAGGTGGATAAACTTTCTGAAGACAATAAATCTCTTCTTTTGCAATT
GAAACAACTCCAAGCTGTAGTTGCAGCATCAGTCAGTTCAAatagaaaag
ctcaaaaaggAACTTGTCTTGCTGTAAGTTTAATCTTTGTAATTTcactt
atttttaaaactttgatgggaattttaaatttaatataATACATATATAA
TTTTATATtaagattattttaaaaaccttgtgACTTAATTTTCCACCATG
ATACCATTTAGCCTATATGGCAATAAATTTATATTTGGTATAGTTTATTC
CAAACGTTTTTCAAACTAGCATTAATTTCATCTCTTTTTTTCAGGTTCTG
TTACTCTCCTTCGCACTTTTCTACTTACCATTCAACCCTGTTCAATTCAA
CTCTGGATCGAAAAACACAGTCTCAACAGAAGCCCCATCACATGCTTGTA
AGTACACAAGATATTATATTGATTTTACTTGAATATATATATCGTCAAGT
GAACACGTGAGCACAATCTGAGAGCTTTGTGACACCATCTCAAGATATTC
AAGGTGTTCTCATTCGTGTACTCATTCGTGTTTGTTCAAGGCGTAGTTTA
TCAAGTCGATGACCTTATGCCAATATCTCGGTGACAATAGTTGaaggatt
tttttcatttgaaatgtaaacaaactgccttaaaagtttgtcaattttgg
cggggattaaatttgtaGTTGTACGCGCCAAGATTGATACACTTATTAAG
GTAGGCTTAAACTCGAGCTTTCCAATTATCTTGTATCTTGTATCCTTTAC
TCATTTTCTCATTATTGTTTATTCTTTAGTTCGATCAAGGACATTATTAT
CGATGCCTGAAGATCATGATTTTATCGATTCGGATCGAAACGANCTATCT
TGTATGTTCCTTTACTCATTTTCTCATTCTTGTTTATTCTTTAGTTCGAT
CAAGGACATTATTATCGATGCCTGAAGATCATGATTTTATCGATTCGGAT
CGAAACGATTCGGATGTTTACAATCTGCTcttgaataatgatgaaaaaga
CATTTTAAAGAAGTTGAACCTTGATTTGACGAATGATGACTTAGCTTTAG
CCAATGCTGCTCTTGTTGAACATAAACAACAAATGAATGTTATCGAGCTT
GATGAAGAACTGATTGGTAAAAATCATCAACAGAGACAGAAAATCAAAGA
CGAAATGTGATAAAGAGTTATGGCTAATTCTGGATGTTCATGattaatct
tttatacggaaacacacgAAACACTGGGTGTTTGCCAcgagttttttgtt
taaaatgaaaACTGTAGGCAAACACCGGGTGTTTTTCGGGTGTTTAACGT
ATAAAGAATGACGCGATGAATATAAAGAATTCAAAACAATTTATAAACAA
TGGCACCTATCAAGAGCGGTGTTCTTTTTGAATGGTGAGATTCAGTTTTA
TACCGAAAAAAATTATAGATTTTTGGTATTTCTAATTCTTCTTTTTGTAT
ATAGTAACTCAACAAATTTATAATGTAATTTATGTAAAGTATTTATAAAG
AAAGAAACTTTGGTTTCCTAAAATCTACACGCTTCTTTCTTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00046623TCONS_00046623Clytia hemisphaericatranscript
TCONS_00046624TCONS_00046624Clytia hemisphaericatranscript
TCONS_00046625TCONS_00046625Clytia hemisphaericatranscript
TCONS_00046626TCONS_00046626Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00046624-proteinTCONS_00046624-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:3050..8792 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.34	11.61	4.96	3.28	38.61	33.18	58.78	61.92	43.76	57.5	70.21	41.54	81.88	52.04	41.4	61.88	29.45	44.38	83.08	89.59	36.46	35.51	24.26	30.2	41.22	59.92	72.61	57.68	52.64	36.53