XLOC_029991 (gene) - C. hemisphaerica

Overview
NameXLOC_029991
Unique NameXLOC_029991
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_120:222487..229932+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029991 ID=XLOC_029991|Name=XLOC_029991|organism=Clytia hemisphaerica|type=gene|length=7446bp|location=Sequence derived from alignment at scaffold_120:222487..229932+ (Clytia hemisphaerica)
CTAAATTATCGTAACAAGGTGAGTGaggccattttttcaaaacaaacaaa
atttcaaaaaatatttaaaaagaaaagactCAGCAGGGGACCTGATCACA
AAAAGATAATGGGGACTGAAATGCCAGAGATCCAGATCAATGAAGTCCTT
TTGGAGATTGATGAGGAGGAGCCAGAGCTGATTGAGATGATGGTTTCCAC
CACATCAAATGATGAAATTATCCATGTCCtgttaaaatcatttttatctg
aaaaagacACTAAGGATTTGCGAAAAGGTATCCAACCATTgcattatttg
tttttattcagTAGTTATTTATTTTACAATGCTCAAACGCAAACCAAGAT
GGATATGTAGGCATTGCCTTAAGATAGTCTAAACTATTAAAaatacaatt
taaaaaaagcactactttttataaactttgttatcagcagaaaaataaaa
aagtaaataaatgaaaattgctgttttcggcaattatggccgttttttgg
aaataaaagttgattttattatctatttattttttctatctattatcagt
aggcccactgtgcctcgtttagttttgttttcaactggtttttgttggaa
atgcagatagcaaaatcgagtcatatgtaaacaataCAAATTTACAACAG
GGGTTTTGTTATCTCATTCTGGCTGTGTTTTGGCATGCAttgatgcagga
tcttttaacatattattttagaacttttcatgttattgagcaaccaaaat
ttgaaagaattatatacttttaaaaatctgaaaaacctttttcttctcca
tgcaattttactattttcaaatacctctgacatctttgcccttaaaagga
cgacacattttgctgattcagcatttcatcgttgaaaaaattgccatttt
cggcaataattgccaaaaagagcaataattgccgtttttatcttaaacac
ccaactggtTATGATTACTTGGGAAtcatataaataaataaacataaaaa
agaaCAGAATAATAATAAAGGCATTATCTTTGCTTTCTTACCTAGGGTGG
GAGATttgaagaaacaaagaaaactcATAGGTTCAGgttttggcctttaa
agagcctgggggctaaaattaccaaaatatttgggggcCTAGTTTGTTGG
GGGAGCctagatgatctgactgagactctgggggctgttcagctaaatta
aaaagatatcttatcttactattaaatcaaatataaaaagcaaaagactt
gtaaacataaatattaaaacaagtaaaatttagttttcatttatcagtac
tgtactGTGTtgggagaacaatgtttttgtttttgtttatcttaggacct
gaagtgttaggggacctagcacaaggcaattttttggagggagctaaatt
gttggggggGGGACCCTACTTTGTTGTGGGGAGCTAGAAACCTAACTGAA
GCTATGAAACTGTGAAAATTTACAGATGGATACCTTTAAAGTTGGTCTCA
CTAACGTCAACATCCCTCTACTAGCACTAAtaccgacacccttctttaga
gataggaataatatgaaggtcggaatcactaatagagaaaatatttttcc
ctcTCTGATTGCTAAACAACcgaaattattttcaatcagcgattctgacc
ttcctattttattcctatctttaaagggggtcgaaattagaagagggatg
tcgacattagaccaatttACGGTATAAAATAGAACATGTgttttaatttg
atatttttcattgatttattttcaGAGATAAAAGAAGTtaagattgaaaa
aaaactaacagGAAAGCAAATCAAAAAGGTGAGTTATACATGCTACCGTC
AACCGTAAGTtagtctaatatcgacatccctagtctaattccgacacacc
cttctttagagacaggaatatatgaaagcttgaatcattgattgaaaaag
gattattcctctctgaccactaagaaaaaaaacagtttcaacctttctat
caatttcagctgatttgggtgtcggaattagaggagggatgtcgacatta
gaccaagttacggtatgtaaaaaaactttctttctgaattaaaaaaaata
atttttcgaaaagtgttCAAACATAAGAGTTCACAAAATTCCcaagtttt
tggctttttcgTCAGAAAATCCACTACATTAAGCAAACTCCATAGATTTT
CAAGAGAGGTAATAATATCAATATTCAAACCAGGAAAACAAATTTAATCC
AAGTCTTTTTGGCATTCAATCTTGGCCATAAAAATTTATTGTCAAAATCT
TATGAAATTATAATAtcactttttcttttaagaacatttatttgttattc
aataTCAAAAGAGAATTTGTGATAAAGGtgagaaaatttaagaatataaa
TTAGGGTTGCTTATTATTGCAAACTTTGATTACTATATCCCCTCTTGTCA
TCCAGAAAAATCAAGTTCCCTCAAAATTGTGCTACAAGTATCAAATCTAA
TCCTTTCAAAATCCAAACCCTGACAAGTGTCCTTCTTTTTTAGTTACGTA
ACAGCAACAAATCCCTGGTTCCNACAAGTATCAGATCTAATCCTTTCAAA
ATCCAAACCCTGACAAGTGTCCTTCTTTTTTAGTTACGTAACAGCAACAA
ATCCCTGGTTCCATTCAGTAATACTATCAAGCCTAACACAGCAGACAAGT
GagtggttttttatttttttagtgcTGCTCAGGACTTTCTCATTTTTAGC
TACTACTGTACTGTATGTAGTTTcagttgaaaaataattttcaatttcac
ttttttttcagtCCATACATACTTGAAGTATTTTACCAATATCAAACAGG
TAAATGGTTAAGGAAAAGCTATTATTAAGTGAACAGCCAGTATTAAAAAG
TAAAGAGCCCACATCAACTTTTGATTTAAACTTCTCAAATGATGAAAGCC
CTAATTATGCTCTTAGCCATAAAAAGctaagatttagaaaaacattcaGT
GCTTTCTGTCTGATAACCATTTCAGTTGCATTTTGCTGGATCCAAAATTC
TTTATAAGGGCATTTTATAAAACTCATAGGGATTATCAAAGGGGTGGGAT
GGGAAGGTCATAGGGATGTAAATATTACAATCACTATATAAAAGTGGGTA
AACtgtttttatattcttttttcgttgacaataaaaaatctgatattctt
aacatttcgTTGTTTCAGTGACGCCTTTACCAAGAACAGTCAGCGTAGCA
ACTTATGAACagcttttaaaaagaaaaatgaatagcACTTCAAATCGAGT
ACGTCTATACTTTtgttatttcataaaaaaagtgCTCGATacttgtacat
gtttttttctttataagcattgcacttataagcatatctaggctcagata
tggggaaaaattaagcatatggcaaacattacttgagcctacgaaaaatg
tttttttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccgggggggggttggaaaaaaatggaaaaattaacaagcggggg
ggcccgtttatttggcacctaagagtactagggttggcggatgaaAATCA
GGGGTATGtccggacgggacctccgaaaactgacccttagagagagtaat
ttttgccgaaaaggtacccttagagagactttttttgaaaaaactttctt
ccATTTTAGAAAGAaaccattttagattttttcgacccttagagagactt
tgaatggtgaaaaaaccgacccttaccatCTGTACATACCcatcactcat
ttttgcctaagtgcccccccccctcggggTCGCTAATGAAAACCATAAAT
AAGTTCGTATATTTTAATAATGTACATTGAAGAACAAGATTCTGAATAAT
AATCACTTCTGATTATTTTTATATTAGTTGGCAAAACTTGAAGACTTTAT
TCCAGACCTTCCAAAGAaacaagaaatcaaaatcaacgAAGAAATTAAAG
ACTTAAATGACAAAATGAATATATTGGAGCGAAAATTAAATGTGAGTTAC
CCTTTtcttaaaatgcattaaatgtaTTAAAAGCTCTAAACACTACTTAA
TTGTATACTGAATGCACTCTCAGGAAAACCAGAATTGTGTTTGTGCGAGA
ATGACGATTTCACTGCTCCCGCTTTAGTGGCTTCCATCCTaccagcctta
ttggaacatttttgagctttttgatCCCGAGATATAAAGTGCTAAGGTCT
TTTAGTTAAACCACTTAAAATATGTTCTAAGTTTTACAGAGGCAATTATC
TCTCGCCACTTTACAGAGCTTTGATTATGTTACACAATCTTTAATGGGTA
GAACTGTGCCCAACTACTGATGAAGGAGGTTTCGCagtctttattttcat
taatgtgcagtttaatgtttttataataACTCAAATAATGATTTTTCCAT
TACTCTTAGGATGCTGATTCAACTCACTGGCAGGGAATGTTCGAGCGGGT
GCCACTGTGGTGATATTGCTCCGAAAGATATAGTATTCAAGGTGGAATAA
TATCAATACGGTTGTCATATTATTTGAAAAGGGATCTCCCGTTTTCGAGG
ACAATCTCGATTTCGTGCAAATATATTTTGGTACCACATAATTTTTGTTT
GAGTTGTAAGCGTTACGACAACAACCTCGACTTCAAGgactttcattttg
ttttgtttcttgttctaaattttttgtctttttcttttttttcatttcct
taatttttttacctgtaaatattaaatttgtacattttcatttcaacatt
ttctttttttcacgtTACATACGCAcattattaaaattttcaaaattttg
aaatcctcATTAATTTTCTACTGTGTGAAATTTTTATGTCCGTaatggcc
ctttttacgccgaccCCTTTTACGCCGCAGCctgattttgggcttacgcc
aattagggccgtagaTAACGCCAAAGTTTGTTAGAATGGCTATTTATgct
tcaatttacattaaaatatcatttttcagtagtaaaccgttgaaaatcac
tgatttttgttaagttttaaatatggagtaaaacagtggataatttttta
tcttcgaatcagatctaaaatcctttaaatagagaaaaatggtgaaaaat
taacgccacttttaagtaaaatttgcaaaattttggctctttttacaccg
gcccttttaacgccggtCCTTATTACGCCAGGAGCCTAAAAGtgacgcca
ataagggccggcgtaaaaaaggCGGATAAGGTActcaaattaatttttat
tcacattatatcaaattttattcCGTTATACATATTACGATATTATATCA
AATTATATTCCGTTTTTTGCCGACAAATATCGTAAATTAGATTAAAGTTC
CTTGACAATCGGACGGAATCGAAAATAAGTATATTTGGATGGGTCACAGG
CAAGAAACATGTTAAGTTTTAATAATGGAAAGGCGATCATTGAAGAGAAA
ATAAGTATTGTTTTCAGATACATTTCTTTTCGATATTAATAAATAGCTAC
TATGTACATTATTCGGTATAATAATAGtttattttttcagcaaaaataaa
ttttaaattgttgttgctatttttaaaaatagaaaatgtcTTTTACGTTT
CAATTTTAATGTCATTTCTCACTCTCTGCCCAATATTTAAGCTCCAGCTT
TATAGAGAATCCGGCTCCATTAGTTCACATAATACCCATAGGATAAAGTA
AAGCAATATGGTTCCTGTAGCTTTGGTAAATTTGCGTTGGATCTGCGTTG
CAAAGACACTTTTCTACAATCGCATGTCTTTGCTTGTGTGACACTCTAAC
TGTATATTTCAAAGGCCTCCGATCGAAATGCTTAAATGTTCTCCAGAGCA
ATTTCAATTGAACCGATTGTAGCCCATCTCACTGTGTTACGTGCCGCAAC
TTTCAGTGTTCTCAAAACCATTATTGAATGAGTAATCTCTTCATTTACAG
TAATGGTTATTCTGTTCTTTCTCACACGTTTTACACTTCACCTCACAACA
CCAAATCAACTTACAACCACATTTGGCTTTTACAATCTCACGTCTCGAAT
AATAACCTCTGTCACAGCATAACATGTTACAATCGTTCACCGAATTCCCT
GTTTTGGTGCAAGATCGTCCTGCTACACCATACGACCCAATAGATAATTT
CTTTTCACAGTAACTTGGTGAATCTTTAATATAAACCATGTCTTTAGCTG
AATACTTATTATAATTAGGGTTGGTTTCTACGAGCCTGATTTCAgtattt
ttggaatttccaTCATCGTTTCCCTGCTTTAGTTCGACTTGTACAGATGA
CCTGTAGAGGTTTTCAAGATGTTTAGCAACCTTATTGAAGCGACCAAGTT
GTCGGTAGCAAGTATTGATAGCACAGTTTGTGGACACTCCGATACATCGG
CATTGAACAAAGGATTTCTCGTAAACAGCCTGTAGAATGGAAGAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047005TCONS_00047005Clytia hemisphaericatranscript
TCONS_00047006TCONS_00047006Clytia hemisphaericatranscript
TCONS_00047007TCONS_00047007Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047005-proteinTCONS_00047005-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:222487..229932 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.86	19.8	52.56	63.33	9.95	8.55	13.39	13.97	24.42	17	17.78	23.74	25.31	24.28	21.9	23.15	18.84	18.3	24.39	30.97	18.78	17.4	15.55	16.22	22.78	18.95	10.58	5.21	7.28	6.54