XLOC_030002 (gene) - C. hemisphaerica

Overview
NameXLOC_030002
Unique NameXLOC_030002
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_120:201575..211569-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030002 ID=XLOC_030002|Name=XLOC_030002|organism=Clytia hemisphaerica|type=gene|length=9995bp|location=Sequence derived from alignment at scaffold_120:201575..211569- (Clytia hemisphaerica)
CTACTTTCACTTTCTCAGAACTTGCTGGAGGAATTTATGAACCCTTTTCT
TTTGTCAAACAAGAAGAATGAAGTCTATGAGGTTGATCCAAACATAAACT
TGAAAGTTAGAAAACAAGGTATAGTATTGTTTATTTGAATATAATTCGAA
ACTCCACCACTGACTTCAGCATCAAAACAATGATTAGAAATATACATGTG
TTTACCTTTACTTGCTTTATTTTTTGTGTGTTCAGGACCCTGCCGACGCA
CCGGACTGTCCGGTGTATTTGTCCGGTGGCAAAAAGTATCCTTTCGCTTC
ACCGANAATGTCACTTGTTTTCCTGATATTTGGATAATATTAAAACCTTT
CTGTATATATTTGGTTCTTCAAAACCATTTCCCTTTCCCGCAGCAGGCCT
TAAAGTTCATGTTGACCCCCGGTTTTTTTTGCGCGGTAATCTAGAAAGGC
CTTTAGTGCGGTATAAACAAATGATTTCATTGGTTTAAAAAGGTCAAAAC
ATCAAGCTATATCACGTGATCAGAATCATGATCGAACTAAACGGAAGCCG
TGGTCATATGTCATATGATATTTTCCNGTTTAGTAAACTCGACCACGTAT
CAATGTTTTGATTTTTCAAGCGGGGATTTCTGTAGAATGATAAAATATGG
CTTGGCTGGAATGGACACCATAACAGCAGTGTTGGAGGTACTCCGATTTG
TGAAGCGTCTTTATGTCACATAGAACAAAATCACCCATGCGTAAAGTTAA
CAGATCTGAAAATACAACGCTAGATCTTATGGATTTTTGTAGATATCTCT
ACACTTGCACGTGTTTCACTATGGAATTTGTTTCATATTTTGATTTAAAA
GCCTACTCGGTGCAAATGAGAAATTGTGTATTTTTTAATACTCTGTTCAT
TAACTCAAATCAAATGACTTTAGAGGTTCGGTGAAATGGTGGCCGAATTG
CCGTCCCATGTTTTGTCAGATAGTCATGTGATTAATTTTTGAACCAATCC
CAAGAGGAGTATTTGGTAACATGATNAGGGAATTTTGGACGCCGGACATT
TATGAAACAAAAAATTAAGAAACACCGGACGCACCGGACTGGTCATGTCC
GGTGTTTTGATTGTCCGGTGGGAAAAAAAATTTATTTTAGTTTGTATCTT
TGAAAGACCCCATCAGATTTAGGCAGCGCTGTCAGATTTAGGACCACTCA
CGGTATCAACCAGTCCCATGTTTTGACCAATCGTCCCAAGTTAGAGCAGT
GTTGACGGTTGGNGTTAACAGATCTGAAAATACAACGCTAGATCTTATGG
ATTTTTGTAGATATCTCTACACTTGCACGTGTTTCACTATGGAATTTGTT
TCATATTTTGATTTAAAAGCCTACTCAGTGCAAATGAGAAATTGTGTATT
TTTTAATACTCTGTTCATTAACTCAAATCAAATGACTTTAGAGGTTCGGT
GAAATGGTGGCCGAATTGCCGTCCCATGTTTTGTCAGATAGTCATGTGAT
TAATTTTTGAACCAATCCCAAGAGGAGTATTTGGTAACATGATCAAAAAC
TGAGTAAATCAATTTTATAATAGTTATTTTTAACAAAGGAAAAAGTTAAA
AGAATGCTACATCAATAGGCTTCATGACCAGAGTTTTTTATACGGACTAT
GATGTTATGTTAAATAATTAAAGACTCCAGCATCAAACAATACTAAGAAA
AAAAATTTTATACACTTATAGTAATTACACATTAATGTGTCATTGTTTTC
AAACTGGAGTTTTTTATTAAGCAACATGACGTCACTTCTAGCAAAAGGTC
TATCAATTGATTGATTATTCATCGATTCAGATCGATTGGCTCCAAGATTA
TCTATTGATCGCAAAACCTGGAATTGCTTCGCATGCCAAAAAGCAATATA
ATTCAAACCTATTGTTATATTAGGCAAATCTTTAAAAGGTTTGTTTTTCT
GAGCAAACATCACAAATGTAAAATGAAAACTATTGGACATTTGGAAATTG
ATATATTTTACCTTTAGCAAACAGAAAAAATATTAGTTTACAAATAGCTA
TATAAAGATGTTTTAAGTATTTTTACGAGGGACTATAAAAAAATATCCGG
GTAGCGGCTGGGTGATGTTTAAAAAAAACTTTACCTGGCTGATTTCCTGA
AAAAAGACTACTTTTTTTTGTAGTCAAGATAAAGAGAAACAAATCAAGTT
TTTATCAACTTTACAAAATTAAAAGTGGTGCTTGCTGACACTTTTATCAC
TCTAATTAGAATCATAATTTATTTCATAAACAAAATTCCACGGCAACTCG
CTCCAAACACAGATGGGTAGATATACCATTGATATTTAAAGGGGAAGAGT
TATCCTCCCAAGGCCTACTAAGGAAAACCTCTTTATTTCAATCAAAGCCA
TTTCTTTAGTCAATTTGTGTTTTGAGTTTTGTATGACAAAATCAGCAGCA
AACGATATCATATTTGGTGGCAATGGAAAGCTTATGGAATCGCCAATCCT
GCACTGATCTGAACTTTAGTATAATAAGTCTTTTCAAGGTGTACACCAGC
AGGGAATACGAAACTTTGTCTTTTTCATTTTTTCATAGTCATGAAAGTTA
TAGAATCTATAGATGCATTATTATCAGGCTTTCCATGGATTATATAATTG
ATGTAACTATATCTGTGTCCCCATCATGCTAAAGTAAAAAAAACTACCCC
TCGGTAAGAATCTTTTCATATACTTGAAAAAGACAAATAAGCCTAAAAGN
ACTATCCCTTGGTAAGAATCTTTTCATATAGTACTTGAAAAAGACAAATA
AGCCTAAAAAATTGTTGCTCTGACAAAAACGTGTCTTATTTTCATTTTGT
TACACATCTTGTAGCATTTTATGTTTCCACCTTTTTATTTTAGTGTATAT
GCTAAGACGTACTCGAGCAACTGAAGGTGGATCATTGATTTGTGAATTGT
GTGGCCGTTCTTCATATAAACAATATTCAATTGAGGTAGAAGTTTCTGCT
GATTCAACCACTGGTGGTAAACGATCAAACCAATGGAAAAGAGCAAGCAC
TGAGATAGCTAAGGTAAGCCTTTATTTTTATAAGAGTCAGATATTCTTTA
GTACAACTGTTTTTCTCAGTGTTTTCACCATTTTATTTTGCAGTTTTTCT
CGTAAATTTGTCTCGANTGCTAAGACGTACCCGAGCAACTGAAGGTGGAT
CATTGATTTGTGAATTGTGTGGCCGTTCTTCATATAAACAATATTCAATT
GAGGTAGAAGTTTCTGCTGATTCAACCACTGGTGGTAAACGATCAAACCA
ATGGAAAAGAGCAAGCACTGAGATAGCTAAGGTAAGCCTTTATTTTTATA
AGAGTCAGATATTCTTTAGTAGAACTGTTTATCTAAGTGTTTTCACCATT
TTATTTTGCAGTTTTTCTCGTATATTTGTCTCGAATTTTCTTGAACACTT
TGTGTTTTTATTTATTTCATTGTATCTTGCATGCATTTAGTAAATATGCT
TCATTTCTATGTCACTAGAACTGGAAAAACATGAGTATTTTGGATAAAAA
TTAGGGTTGATATTAAATTGTGGAAAACGAGGAACGAGAATATTTCTATG
AATCTCTTTTGTGAAACAATGTATTAAAGATCTGCAAATATCAAGTAGAA
TTAAAAAGGGTACTGTTTAGATTTAGCCATACACACAATTTCTTTTGGCC
CAGAATCGGGCCTTTCATTAGCATGTCTCTGTCAGTGGTGTTGTATGTCT
GCCGTAGAAAAAGCAGTGCTTTGTCAATTCAAGTTTATTTTGGAAGAATC
AGCGCCTTGTAACGACTATTGCTATGTGGCTGGGCCTTCATGCCCCATCA
GCTTCTTGTTTCTTCTTTCGGCTTCTTGTTTCTTCTTATATAAGTGGTCT
GACACGTACTTTTCTCGCAACACGATGTAATATATAGGTTAATCTCTTCT
CGAGCATCTTAACTTTTGTGTTTTGTTGAATGTATTGTTTTGAGCGTTAT
TGTTTTTTTACAGATCTGTCGAAGTTGTTTTTTCGAGCAGAACAAAGATC
AATCATCTAGTAAGACTGGATCCAAAACTCGGACGCGTCCACAATTTCAC
CGTTCTGAATGTGGGATCACTACCGGTCGTGCTTCCAAAGCATGGCATTT
TGTACGCCGTGACCTAATCGTAAACAAAACTAAAGCTTTACTCAATAAAC
GATGCTTTGAAAATGAATTTTCAGACCGCTTCTTGAATGAAGAAACTGAA
GTTGAGGAATCTTGCGACTCGGACACAAGTTATGAGAGTGATTCAGGAAG
CATTGACGTTCTTCCTTTTCAATTAGCCAACACAGGTTGGGTGACACCGG
GGTCGTTAGTTCAAGTGAAACGCACTGATGCTCGGCAAGTCGTAGCGTCT
CCCTCACCTTTGCTAACAGAAGAGATTTCAGATGCTTTGTTGCAGACTGA
GCTTGCAATGACTCGAGATATTTCTCCTCAACCAATCAAATCTCCTGAAT
TAATCAAATCGCCCAGTGATACTTCGGCAGATGACACGATCCTGAATGCA
CTCATGGAATCTTTCGAAACACCATTGAGCATCGTAACCGTAGCGGAAGA
CACTGCAAACCCAGTGAAAACTCAACTAACAAACACTATAATCGAAGATG
GACTATTAGATTATTTTACGGATCGACCTGCTCGTGTGCGACGCATCAAA
CGGAAGCGAAGGCGGACCATATCAAGAAGCAGTGTTATTAAGAAGAAAGT
GAAGAAAGATACCTCGAAGCAATCAACTTATAACGGACTCTGCAAATTAG
TTACCGTTTTGAATCACACGAAAGGAAAGTATGTTGATAATTCAAAAACA
TCAACTTTATTTGATACTCATGGTCTTGATTGGCGCAACAAGGATCTACC
GTCTTATCTGAACATCAACACAAACCAATACGTAGATTCAAAAGGAGGTT
ACCGACAGAAAAAGAAAAATGTTGATACTTTTATGACTGATCAAAAATCA
AAACCAGTCTTAAAGATCAAACGGAAAGTTAAAGAATTTTCTCCGACACC
ATCTCCCATCCCTNCCCCCCCCCGCTTATTCCAACCCCCGGCTATTAGGT
ACCCTAGAGTAAGTCACACACTTGAATATTTGAACTGAATAATTTCTTTT
TAAATCTCTCGAGCAGTTGCAGCAACACAGAAGAAATTTGCATCTGTAGC
GTACGATTGTGAGATTTGTCAACAAAACTTAGCAAGAAAATCATACAAAA
GTTATTCCAAAGAAACTGCACCACTTATTTATCTCAAGGTAAGATACTTT
CTCAACCCTCATCATTTTTATGAGAATCATTTTGCATATTGATATAGTAA
GTTCCCCAGCTAATGGATAATCTACAGGCAGAGCAAACAAATCCTCTTAA
ATACCCTTTTGAAGGTGAAGACACTTTATTCTAAATCATCAAGTCGAACC
TTAATTCCGATGTCCCTTTTGAGACTTACGGTATCTTTATTTATATTTCA
GTTGTTCAAAGGTAACAAAGACAAGCTTCGTATCTGTTCCAACTGCAACC
TGAGAAAAATGAACGAGAAATACAACAACGTACAATCGCGCAAACGACCT
GCTGGACAGAACGAAAAAGAGGTGAGATGCAATCCAATCCTTTAAATTTA
AAATGACTTTCATGATAATACACGTTTTTTTTTTATTAGAACACCTAAAA
TTTGGCTGAGCCTGGATGTGCTTATTTTCTTGGTAGTTTTCAGCCTATAA
TGTTCTTAAATACGCTCTTAACTTTTTAGACTACTCTAAATCGACAATAT
CATGCAAAACAAGACGACTTAAAGTCGAAAATTTCGCATAATACTTGAAC
ATTAACGACGAAGACGCGTGAAACGTGACTCCTGCAGCATTATGCATTTT
GAATGAAGCGTTACAAAAAATATACACAATGTATTGTACACACAGGTCAT
AGATGTCATAGATACCCTGTTTTTTTATGAAAAATCTCAATCCATTAAAA
AAAAGATTCCTTAAAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATTTCAAAATCGATCTAAGTCAAGAAAATAGTAGCTTCAATGT
TCTACAGATTTAACTTAGCTTATCAAATCTAAACAGATAAAAAGGACAAT
TTCAGCGTCATTACTATTTGTAAGTTTCATATAAATTGTTTTATAAACTA
CATTATACGATTTCAAAATATATGAACTCCCATACACGCCGTGAAACTAA
AAGAAAAAAGTAAAACCAAAATAATTGTGTCTTGGATTTTAAAATTGTAG
GCATCCTTAGTTTTCTTCTTAGTTTTTGGAAAACCATCCATGGATTTTAT
TTTTAATATTTTTCTAGAAAAGGTAAAAAAGTAGCACTTAGTATTCATTT
GTATTAACTGTTTTCCTAGATTTTTTACTTGACACCACCCTAGCAGTCAC
TTAGTACCATCAAGTACTAACTGATTTTTGAAAATTTTGTAGGTATACCA
CCACGGTACTAACCGGCATGATGTCTTGTACTAACGGCTTGACCCCCCCC
CCTGGACAGAGGGGAATTTATAGGACCTCCACCCCACCGGGGTAGGTCCA
AAAAGGGACATATTTCCAAATGTCTCAGGCGCTCCAACCTTGATATCTGA
AAATGTGCTACCTTGAGAACAAAACATACATTTACCTTTTAGCTAAGAAA
CACAACAAACGCACAAGCAGAAAGGCGTGTTATTCATTAACTAAATATTT
AAGTCTACTCAATATTTTGATGCATATTTTGTTCCTCTTTTTGAGTGCTA
GGTATATGAGCCTGANTTATTACCTTATTGCCCATTCTTTTTACATTCCA
ACGGCTTATTAGCAGACGCCCACGTTAAAACTTAAAGAGCGAGCCAATAT
CTATCATCCCATCGGGGAAGAAAAGCTGTAACTTTTACTAACCAAACTTA
TCGAACACCAATCAAACTTCATTGAATAAAAAACTGTCATCATTAATGAG
GGACCGCTGTATATACATTGTACAGTGGTGTACGGTGGGGCTGGATCTAA
ATGTCCTTTGTACGGNTTATTGGTGCATTCACTAACTACACAAACATAAA
GTACTTAGTAGTAAACAAATATTAAACCTCTTTAAACACTCTACAAAAGA
CCAGAAAATATGATAAAAATTTACAGTATACAGCAGCAGCAAGTTTCAAA
AGCAGTCATTAAACAGTTCTCACGATGAATGTTTGCAAAGGCTTGGTTAC
ACTTCTTACCTTNGTACGGCAGTGTCGTAGGCAGGGTCGTTTCGATTATA
CAAAAATGATTGCTGAATTTCAATTGACATGATTTCTAAGAAATACCGTG
AGATCGGGTAACTTACATAAGCCCTCAAATGAATTACCCATTTGGTCATT
AAAATACGAAGTTAAATCAAAACAAAAATGGTAGGCNTTTTTATCACTTT
TTATCTTTGTGAGTGAGTCCACCTTTAGAATATTTGCCGTAGTACGCCCG
CAGCCAAACGCCCACGCCATAATCTTCGCCCCCAAAAAATTCTCCCCCGC
CGCCGCCGCAGAAAGGCTATCGTAATACTTTCGCTAAGCGAAATTAATAA
AGAGCACTTAAAATTGGTAAAATTTAGACAATATTTGACTCTCGATTTTG
GAAAATCCACCCCTAAGTTCGGTTAAAACTGCTTAAAAAGAGGAAAAATT
GTAGTTTCTTGTCATTTTTTTCCAAACTGAGGCTGGACATGTTCTTACGA
TGTTCTTAATTTTTTGACAAATTTCAGCCTCAATGTTCTTATAAACTAGG
TTCTAATAAAAAAAAAACGTGTACCTCAAAGTCATAATATAATTTCCAAT
CTCCTGCAAATAGTGAACGTTTGACTTAAACTGTAACAATATTTTTATTG
TATCTTTTCAGCCACCTGCCCCAAAAGTTTCTAAACAAACACCAATACCA
GCAAAATCAAGTTCAAGCTCGTCGTCTATGAAAGGGCAAACGAAACAAGC
CTCCTCACAAGTATTCAAACTCAGTGACGCTGGTGCACAAGACATGAATG
TTACCATCGTTAAAAGTCCAGATGCAGAACAGATGAAAATGATTCAAAAC
AGTAATGCTAAATACGTCATACTGAAAGCAACACCGACTGCTAATGGCAA
CATCGTTACCGGTGATTTAGACCAAATATTAAGTGAAATCCGTATCCAAG
GAAAGAACTATAAGATTGATAAGGATTTCAAATTAAACGAACTTGTAAAA
GAGAATGAAAACGCTGGCACTGTGACTGCAAACTCTAAAGATCTTTTAGT
GAAACAACTCCCAAACATTCTCAAACGAACCATAGGCCAACGCAACGGTG
GTCCAACAACCTTTAAAATTGTCAACGTCATGCCTCCTGCTATGGTTGCT
AACAACACGAACGTGCCCAAAGTACTTCCAAAAACAACAACACAGCAACA
CGTCACATCCTCTCTGCCATCTATTTCTCTACAAGTTCAAGAACAGATCC
GAACCTCTCTGGCTAATAGTAAGAAGCCGAGAACAAATTTAACCGGATTG
ACCAACTCGCTTCCAACAAACGGACCGGTCAAACCAATTCAAATGGTTAA
CCCGCCCAAAGTAACACTACCTGCTTTATCCGGTAAGAAACGGCCAATGC
CTAATACTAACCAATCTGTTACACAGATTCAAAGACAAAAGATTGTTTCC
TCAACAAAAACTTCAAGCAAAGGAGATTCTAAAAAATGAAAAATGTATTT
TGTAAAGTATTTAATTATGATTTTAAAGAGTATTTTAATGGTCTTTTATT
AAAAAAGGTTTAATATACAGTGTGCCCGGAAAAAATATCATACTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047031TCONS_00047031Clytia hemisphaericatranscript
TCONS_00047030TCONS_00047030Clytia hemisphaericatranscript
TCONS_00047029TCONS_00047029Clytia hemisphaericatranscript
TCONS_00047028TCONS_00047028Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047029-proteinTCONS_00047029-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:201575..211569 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.35	3.62	4.44	4.36	13.3	10.64	12.51	13.61	8.11	9.57	9.38	7.99	8.08	7.21	9.03	10.51	11.93	10.29	8.7	9.06	9.1	9.96	14.12	13.29	19.97	18.05	5.74	5.08	10.05	12.14