XLOC_030045 (gene) - C. hemisphaerica

Overview
NameXLOC_030045
Unique NameXLOC_030045
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_122:110058..115869+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030045 ID=XLOC_030045|Name=XLOC_030045|organism=Clytia hemisphaerica|type=gene|length=5812bp|location=Sequence derived from alignment at scaffold_122:110058..115869+ (Clytia hemisphaerica)
GTGGAGATTGTAAATCAGCATTTTATaatatttgttatttttaattttta
gagcTGTATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAA
TGTTAACTATCCTTTCCCATTGGCTAATCGGGAtgtatcttttcaaaaat
tattcctCGTGTTATGTCTGTCAacacgaaaaatcatttaagaTAACGTA
CCAAGCTATCATACCCCTGTAAAAATTCAAACAGCGCCGCGGCGCTTATT
TTGAGGAAATACGGTATTCGCAATCTGAAATTACTTTACTAGTGGTGTAA
CAGGAACAAGAGTACATTACTCACAAAGGCCACGAGTAAATCtattgaac
aaaaatttgactttcatTTTACGCGATTTAAGCGATCTAAGGTCTCCAAT
GTACGTcctgttttttttgaaaaattagtgAATGAATTTTTAGGTATTTT
GATAATCAAATCTTTGATGGCAAGTAGAAAAGTCCATTCCTTAACAAACG
TTACTTTACCGTACCTATAGTATACTTACATACGAGAATGTAGAGAAATG
ACAGAAGAGACGACAAATAAAACACCAACTTGGGTCATCTTATCAGAAAG
CAAACAAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCGTGTCAACG
ATTACAAACAAAACTTGAGCATACAACATAAAGATGAAAACACTACGAAA
cgtttgttattttcttttctttagagAGTTAAAGATTTTCTAATACTCTC
TACACACGGGTTCGAAAACCCTCCTCGGTGGAAAAACTTGCCTCTATTTG
GGggaaaagtcaaaatttagttgcAGAGTCTATGGCTACCCTACTAAAAG
GCCAGATGATCGAGTAAACAAAAATAAGCTACCAATAACTTATCTAATCT
CTCATTGAGTTAATTGCTCACTTTACACGTTTATATGATAAAGATATTag
gatatcaaaatttgaaaatcaatacTTTGAGGGATTGAATTTCGAGAATT
TGTCCTTTTTTTGAGGCTTTTGCGAcacttagagagactacttttcCCAA
TTTTCAGCCGGAATTTTCAGATTAAATCCAATTTCCGAGAATTAATGACC
CTTTGATGGAGTCGGTTTTTGATATTTCGTAATTTTGAGACCTTTTTAGG
GACTCTTTGCCAATTCATGTTtattgtacccctttgagagacttttgaga
gctaaaaaagggacccttatgacTCGCACATTGATACCTTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTAGTAACAAAACTAGTGACAAAAATAGTAACTAAGTGtaacaaa
taagtattttcgattttcgacctattttgaaaattgttcgcgtgtattta
atttcgcgattttgtttttttgaaaaatttaaacggtattaaatttcgcg
aaatttggcctaaaaaatcgcgaaattaagtacctgcgaaattttgtaac
acgcgaatataataccaataaggtaagAACCATTTTGAAAGGTCGACACG
TTTGTCAGTCTATTATGTACATAAAGCCATGTGCTCGATCAAAACTTTAT
CAATTATTCGGTAAACATATCTTTATTGCCAGGTTTTTTACATCTGTGGA
GATTGTAAATCAGCATTTTATaatatttgttatttttaatttttagagcT
GTATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAATGTTA
ACTATCCTTTCCCATTGGCTAATCGGGAtgtatcttttcaaaaattattc
ctCGTGTTATGTCTGTCAacacgaaaaatcatttaagaTAACGTACCAAG
CTATCATACCCCTGTAAAAATTCAAACAGCGCCGCGGCGCTTATTTTGAG
GAAATACGGTATTCGCAATCTGAAATTACTTTACTAGTGGTGTAACAGGA
ACAAGAGTACATTACTCACAAAGGCCACGAGTAAATCtattgaacaaaaa
tttgactttcatTTTACGCGATTTAAGCGATCTAAGGTCTCCAATGTACG
TcctgttttttttgaaaaattagtgAATGAATTTTTAGGTATTTTGATAA
TCAAATCTTTGATGGCAAGTAGAAAAGTCCATTCCTTAACAAACGTTACT
TTACCGTACCTATAGTATACTTACATACGAGAATGTAGAGAAATGACAGA
AGAGACGACAAATAAAACACCAACTTGGGTCATCTTATCAGAAAGCAAAC
AAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCGTGTCAACGATTAC
AAACAAAACTTGAGCATACAACATAAAGATGAAAACACTACGAAAcgttt
gttattttcttttctttagagAGTTAAAGATTTTCTAATACTCTCTACAC
ACGGGTTCGAAAACCCTCCTCGGTGGAAAAACTTGCCTCTATTTGGGgga
aaagtcaaaatttagttgcAGAGTCTATGGCTACCCTACTAAAAGGCCAG
ATGATCGAGTAAACAAAAATAAGCTACCAATAACTTATCTAATCTCTCAT
TGAGTTAATTGCTCACTTTACACGTTTATATGATAAAGATATTaggatat
caaaatttgaaaatcaatacTTTGAGGGATTGAATTTCGAGAATTTGTCC
TTTTTTTGAGGCTTTTGCGAcacttagagagactacttttcCCAATTTTC
AGCCGGAATTTTCAGATTAAATCCAATTTCCGAGAATTAATGACCCTTTG
ATGGAGTCGGTTTTTGATATTTCGTAATTTTGAGACCTTTTTAGGGACTC
TTTGCCAATTCATGTTtattgtacccctttgagagacttttgagagctaa
aaaagggacccttatgacTCGCACATTGATACCTTANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gggggttggaaatttttcgaaaaattgacaaGCGGGGggccccgtttatt
tggaacctaagagtatccTTTAGTCTGAACTTTATTTTTGCAAGTTTTTT
GTCTTCTGTTTTCAGTGTTCATGCATTACAAAGACAACCCAGGAGGTTCA
ATACCCACATGGCTCATCAACTGGGCTGCTAAGGTTTGTTTTGCATAAAG
TTAATCTTttctaaaaacttgaaattgaaTTGTCCTTTTTCGTTGTAAAA
AggcatttttcatgtttttcttatCCAGATATTATTACCATTACGATTTC
AGCCCCATTTTGAATAACTTCtcttgtaatttttcttttccttgtaGAAA
GGAGTTCCAAGCTTCTTGACAGAAATGAAGAAGGCGTCCGATGGCtatcc
aaaatatttggaaaagaaaaaaaaggggaaaaagtGAACTGACTTATTCG
AACGTCTAGGATTTTTATTATAATGCATGCATTTTATTACCACCAAATCA
CTCATCCCTCTTTGAGATATTTTACGTGTTAGCCCAGTGATTACTAGATG
ACGTTAATGATGAGTGGTCAAGGCGTCAACTCCTTACGACTTTTAGATTC
TTTTGATAGTTTTCACGGGGTCTATTGTCTGCTGGTTGGGCTTTTTTGAA
CTGATTGGAACACTGTGGGAATTCTAACAGGAAACTGACGCTTTGACCAC
TCAGCCATTGCTCCTCAGTTAAAAAGAACATTGCTTATAATATAAGCGTC
ACCTGGTACAACTAGtgtaatttctttttctttctattaaagtttttttt
cgacaAGATAAAAGTTGTATTCTCGGTGAAGTGATGTTATGAACTTCAGG
GTGTAAACAATTTTTTAGTGTTTTGGTTTACAGTCTAGTCTTTCTAGATT
TTTACGAAATGAGGGTTTTAGCTGATTCATAATTACACGGAATCATCGAT
AAGTTGAGAAtcttttttaactgtttttgtttttgtttttatgcaCAAAC
ATTTTGTCTGTTTTTCGTTAGGATATGCTCCGACTTTAGgtcatttttaa
taaaaaacatatttattaattttgagtttggaaactattctagtcgcgag
ttagggagttgctagtttcgagtttcgagttggggagttaaaaaattacc
ggctaccgaaaaagaataacatacatcaaaagtacgattttgaaagtaaa
tgtaatatgagagtaatatataacacatataatacgtataatatatatac
cacctgtaataagcttatttgccttaaacacgtgcgctgagagcatggaa
agctattttctactgtcaNaagcatcacttgcagtatgatcaatattttt
tggggaatttgtttgacaatcattgtatttaaagattttgtcaatatttt
tacaagaacgtgtcatgttgtcagtattatgacaatgacataacagaaca
taacagtactaagtattttggctttgctagccagcaTCTTACCAGTTTCA
TGAttttaaagtcaataatatgtttggtactggctaatttgaaaattgta
cttttcggctacattagtttaaattagaaaattttcggtcgccgtaaagt
tttacgaacATCCCAACttgaaactagcaactccccaactccccaactcc
ccaactcaccaactagaacattacctagactcATTAATTTTAGTACTTTC
ATAATTATAGGGTAGTTTATAAATAAACGCATCACAGATTTGTAttgtaa
tttttgtaaatgtttaTAGATGAATTTTCCTTTCCAggaataaattttca
aatttttaaaag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047120TCONS_00047120Clytia hemisphaericatranscript
TCONS_00047121TCONS_00047121Clytia hemisphaericatranscript
TCONS_00047122TCONS_00047122Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047122-proteinTCONS_00047122-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_122supercontigscaffold_122:110058..115869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.5	4.13	3.06	3.1	8.21	6.32	6.77	8.89	7.11	6.9	6.38	6.43	9.69	6.85	8.51	8.33	4.44	5.56	7.66	11.22	4.8	5.89	4.25	5.22	6.73	8.3	8.52	6.91	6.84	7.05