XLOC_030244 (gene) - C. hemisphaerica

Overview
NameXLOC_030244
Unique NameXLOC_030244
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_13:120341..128796+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030244 ID=XLOC_030244|Name=XLOC_030244|organism=Clytia hemisphaerica|type=gene|length=8456bp|location=Sequence derived from alignment at scaffold_13:120341..128796+ (Clytia hemisphaerica)
gtttgcctttcctctcTACCATGAAAAgagaatttagttaaaattcaatt
tttttcagacacagTTAACctccaaactcttatactttttcgtgggtcaa
tCGGTACTTTTGTATTTGACCCCAAGTTTCTTATCTGGTCCCACAGTTTT
TAGTGAGCTTGACCttatttcatttctttgttttagaaaacaaatgaaaa
atcaatAAGATATAACAATATCTAACATAGTTTACAATGACATAAAATCA
AGTTCTTCTAGTTTTGATGCGTTATTGTTGTGTGTATTTAAACTTCTATT
GATGAGTGTCACATCATTATTAACAACGGCTGCGACAACCTCCAAAAACA
GCTCTGTGGCAAAAATTGCTACACATGAAAGCAATGGAGTGGTAAGTTCT
TCATCTGTTAATTCATTTTTTCTCCCAAATTTTCAGCCCATTAAAGACAT
TTCTGTAATTCTTGCAAATTCTGTAAAACAATCTGAAAAGGTAATTCACA
ACAGTtcgcaattaaaaaaaaattcttataagcAGAGTGTCGTTTAGATG
AAAATACATTAACTCTTACTTTATCAATATACAATTATAttagaaagaaa
atgtttaaaaatttaaGGTGTGGTTGTGTTTAtgctaaaaagaaatttta
tctcTTTCAAAGGATGATGGTAAAAATTCTCCCCTGATCAAGAAACTACA
TAATCCTTCACAGCTTCAACAAAAACTTGGTAAGCAGTTTTCTTTCAATC
AATGTTCGAACTTCTTCCAATTCAGATGGATTTCCGCCTCTGAGACTTGT
ATGTTTTTTCTAACTTAAAATTGTAACCTTGGCCCTTCCTTGTAGTGGAA
AAGGATCCTATCTAGAAAAGGAAAGGGCCAATCTCTAAATTTTAAGATAT
AGCAAAGTAAAGAAAGATTAGTTTTCTCAGACACTTAATTTGAGATTGTG
AATGAAGAACTAATGGGTTAAATTTATCGTTTAAGTTGTTGATTTTAAAT
TACTTTTCTCACATTTATTCAGCAAAGCAACTTCAGAAGTCAAGGCAAAC
CAAAGCATACTCTTCCAAAGATCTGTAAGTAAATTTGCTTTCTTCATGCC
TTTGGTCTGACAAATGTCGTAAAAGTTTGTACTGATTTTCTCTCATCTTT
CTACATTGATTTTTCTCAATATTGAAGCAAACATTTTGAGAAGAGCGTTG
ATAAAAGTATAAGAAATAGAGTATGAAAATTCTGAATTCAAATCTTAATT
TGATGCTAAAAACACAAGAGAATGGCTCATGACTTACCTTGTAAGTCTTG
ATGCCCttcagtgtgtcccaaaaaagggaacaaatttttgtataaagtaA
GATCCTCATGATTTATGGGGACTTGTATACTTAATATTTCGATCTCATAG
ACCTATTCAATTATCTTGTGAATTGAAATTCTATCGAACTGAAAAGAGAA
TTTTAATCTCATTTAAATCATTCTAAGCCAAATTAAGATATgagttttac
tttttataaaaatttgtctGATTTTTTCGGAACACACTGTACATAGCTTG
AACGTTGAGAACAGAAATAATTGTTTCTGTATTTCAGGTACACTGGGAAG
AAGAACTTTTCAACTGAAGAGCAAACTCCTTTAGTTTCAATAGAAAACAG
GTTTATCTTTaaatatattcttaatttttcgttcTCCAAAGAAAAGTTAG
AACCTTCTATAGGATACAAAATTAGTTCACCTTTAGCTTTTACACAGTGT
TCACGGTTTCAATCTAAGACGGATTTCTCccaaaatataaataaagaCTT
TTCCACATTTGAAGTTTAGAAAAATCTAgtattaaaatattgaaaatctg
tGCAAATTTGTCGTTTGTCAAGTTCAGTCTATTTTCCATTTGATATGAAA
AAACTTTGCTTTAACACTGTTTACAGGGATTGGATATTAACCTTCCTTAA
GGAAACTGATTTTTGGGAagtagaaaaaattgtaaaaaaaaattgccaag
aatttattttggcgtgTAACgtaacttttgaattttggcTATAACTAATT
TTGAGGAATGGTAGGGTAaatcaaaattcgaaaattacaaaaaaagttaa
ctacattttattttaatttataaatATTTATAAATTCGGAATGTCTTCCT
TCGCCCCAATTAAGAAAATGTTTGCCACcctcgattttttattttcttta
tttgggATCGAGATGCAAACAAGCCTGCATGACTTGCAGTAATCCTAGGT
CCAGTGACCGTAGcataaaggtagagcatccagctacggtgcgcaaggtt
gtgggttcgatccccagctgggtcataccaaagattcccaaaatggtact
tgatgcctctctgcttgatgctcagcaactaaagagacggatcaagtgta
agtggagaaatccagggaaaggagtggcgccctcccctaccttcgggtag
acaactatacgaaaagggagccttcgggtcgccctcgactgcagTCGCAA
ACGTACTACGTACGAATCCTAGGTCCAGTCCTATGATCGTATTTAGCTTT
CACGCTTCAAACACATACTGCTAAAAATAATgattgattttttataaaac
ttttcaGCGACGAAGATGAAATAatgattgatttttgaaaacttttcagT
GATGAAGatgaaataataattgatttttgaaaacttttcagCGATGAAGA
TGAATTCGATTACATCAGTTTGAAGACAGAAGCAGAAACGGACGATGAAG
TCGTTCTCTTCAAACAACCCAGATCTGCTGCTACTAAATACAGGGTATAT
ACAAAATACTAATAGGGTCTGTAGATACAGGGTAAACAGTCTCGACTGTg
gtcgagcaatgatgatgaCAGGTTATTCTATATTCTATTTTACATGAATT
TGATATAATGAAACTATGAATGACCAACTTTGTAAATCTTTAGTATTTAA
CAAAGTCTTTCTTAGATTGCTCTACTCTTTACTTTGTACAACACTTGATA
TTTATCAGCCAAATTTAAATTGAACCTTTTCAGTTGAGCTGGATGTAAGC
AAAGAAAACCATGTAAACAAAGTCTGTttcctttttttagttttcaacaT
CTGACGATTGCAAGGAACACCTTCTAAGAGATGGCTTTAGGTTGGTATCA
TGATGATTTGTATTCAAGCTTCAActaaataaaatttataataaAGTCTC
TACTTTCGGACACTTTCAGGTATGACGGAAAGGGATGAGTAGTTAGTTTG
AGATTTTCTTTCTGTAGATAcctgatacacgttttttataagaacatcca
aatttttcaagcctttggatgttcttaactttttgagtttcaagccttaa
attgttcttaacatgttcttgtttttcccatttttttatgtaccgggtga
cccacgaaaaagtataagagtttggagggtaactgtgtctgaaaaaaatt
gaattttaactaaattattttttcatggtaaagaggaaaggcaatcctaa
attttgatgtatcattttttaattttggaaaagtagttatcaagatatgg
aggtataaagtcaaaagtcattataaaaaacagtcaaaaaacgtCATAAA
AGACAGcatcaaattaattaattaacaaataaaaagaGACATCGAGTGAG
AAacatattttgatttcttttaccgGAAGGATTCAGAAAAGAATAACAAA
GGTTGacaattcttttttaatcatatttattcatttggaaaagtactctc
gggtacctaatagccgtccccccgctaattaatttttcgaaaattttcca
cccagaacattcttattccaacccccccccNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNtagttaaaattcaatttttttcggac
acatttaccctccaaactcttatactttttcgtgggtcacccggtattct
TGTCTATTTgcctaagaaattggctgttttcgagtccgcaaagccttaaa
atgttcttaacttactcttaacatttttgccatcgaagacttctgttctt
acatagtttgttcttataaaaataggTGTATAGTCCTGAATAAAACCTTT
GAATCTTATAACCTGTTACAAAGTTGAGTTATCTCAATTTTAATTTCTCG
CTATTTTCTTTCTAAAAGGGTTTAACTTATAGCTTGAATTTCTTAGCTTA
GAAAAAATGTTaagcaaaaagattttatcaagGACCATTAATACGTTCAC
TGCCgagccttttttagaaattggaAATTTGACCTTATTTAAAGCTTGAC
TTTAGTGATGGCTTCAATGATCTCATTTTTGCTTCAAATACCTTCAGATT
GTAAACCAAACAACGCAAAACTTTGTTTATCCTGAATATgcaaaaataag
tttttctATATAAGAAATTGAGGAAGGCCCTTTGAAGTACTGTAGGTATT
TTGACCCGTATactacgagtatactcgtagtCAGCAGTGAACGTGTTAAA
GGGATTTACAGGTTGAACATCCATCAAACCATCTGACTACCTCTTTAAAT
TTAGGATATCAAGTCTCTCTTGTTTAATCACCTTTACGACTCTTCATATC
TTTTTTTTCGATTATATACCAAAACGCATTTGTGttaacaaaatatttat
ttttcttatttgattAGACTGGACGAATTATCTGATGACGAAGATCTAGA
CTTGATTCCACCGAAAGCTGATAATGCAACATGGTGGTCTTGTGaaggaa
tgacgtcatcatgttCCATTCAATAACAATGGGTATCGTCAATGCTTTTT
TTCTTatacaaatacttttttatacGATGCAAGAAATATCCATGTAGTCG
TTAATGTCGGAGCCTTGTATGTTTTAAATCAAGGTTTTCATCAAAGGGGA
AatggaaaatattaaaaagagTTTCCAAATTTGTTAACCTTCGATAATGT
TTACAAGAGATTTTACTGCAGTAGGGGGGACTTTCGTAAGGTCAATCATA
AggtgttttgttttaaataggTTTATTCTCGGCTACTTTATAGACACTCT
GTTTGAGTTTCAAAGGTTAGATTTGCAGATATTAAGCTTTCCtgtaaaaa
tatctttcaaaaagcatGACACTGTAAGGTTAACGGCTTTGGGAACTCTT
TTTAAGCTTGTGTGACAATGCATTCACAATCAAAAGAGTAGGTAGattta
tataatatatttttaaaaagagtaaTTGATACTTTTTTGTTACTAGAATA
ATGCAGTGTTAAGGCCGCTCTCCACTTGCGCgtgctgcgatcgcactttt
tggctttaatccattttgcttggaaaaaagattacgtcttaaaaatgtag
cgcgcgctttaaacttttttcaaacgttacgtcagatcgcgccaatggag
ttgcttcatttttctttgacCAATAGCATGGAAGCTtcgctcgaaaaagt
gcgattgaagcgcgcgcaagtggcgACCGGCCTTTATACAACAACAAGGA
AATATTTTAGCACTTTTTAGATAACAGATCCTACATTGCACTCGCATCAT
TTTAACTATCATATACTGTAGTTCAGTGagcttttattttcttttgactC
TCGAATTGAAggtaacaattttaaaaagggcaaaaaaatatcagaagGCC
CTACTAGCAATTGGCAACaaggaaaaaataattattttttattgaaaaac
ttttcccAATATCCATAATTTcttaatatttcttttgattgaattttacc
aattttgtcaatttgattgaaaataaatttttttgtaaataatggACATT
TTGTAGgcatttttgttattttctctcttattattattataagtaAACTC
CAACTTTTTGTTTTACAATTCTTTTTTTACTAGTTACTGttgacaaaaaa
ataacatattCAATCCTTGAGTTATAGGCCAGCGTCCGAGGTTcagaaag
ttaacaaaccataccatttttggatactactaattcagggctatccagcc
gtgggaatgattttttctgaaaatgctcctagGAAANCTAGACTTGATTC
CACCGAAAGCTGATAATGCAACATGGTGGTCTTGTGaaggaatgacgtca
tcatgttCCATTCAATAACAATGGGTATTGTCAATACTTTTTTCTTATGC
AAGTACTTTTTTATACGATGCAAGAAATATCCATATAGTCGTTAATGTCG
GAGCCTTGTATGTTTTAAATCAAGGTTTTCATAGGGAAATGAAAGATAtt
aaaaagaatttccaaaTTTGTTAAcctttgataatgtttacaagaaactt
TACTGCAGTAGATGGGACTTTCATAAGGTCAATCGTAAGGTGTTTAGTTT
TAAATAGGTTCATTCTCGGCTACCTTAGAGGCACTCTGTTTGAGTGTTTG
AGTTTCAAAGGTTAGACTTGCAGCTGTCTCCtgtaaaaatatctttcaaa
aagcatGATACTGTAAGGTCAACAGCTTTGTGAACTTTTTTTAAGCTTGT
GTGACAATACATACACAATGGAAAGAGTAGGTAGatttatataatatatt
ttttacaaagagTAATTGATAGTTTTTTGTTACTAGAATAATGCAgtgtt
aaggccggtctccacttgcacgcgctgcgatcgcactttttggctttgat
tctttttgcttggaaaaaagattacgtcataaaaatgtaacacatttcaa
ctttttccaaacgtcatgattattacttctctcatttgaccgaaattcaa
tcccacaatccttttcgtcttaattcaaaagtcgtgaaagttattacttt
ttctttgtaatcgagtgtaatttgcgtgcaagcgtaataaacgcaaaggt
tgatggaattgaatttcagtcaaacataaaaatcaatgtctatttttaga
ttcgcgacggtatgctattgaagcgcgcgcaagtaaAGACCGGTCTTTAT
ACAACAACAAGGAAATATTTTAGCACTTTTTAGATAACAGATCCTACATT
GCACTCGCGTCATTTTAACTATCATATACTGTAGTTCAGTGagcttttat
tttcttttgactCTCGAATTGCAGGTAACAAAtttaaaaagggcaaaaaa
atatcagaagGCCCTACTAGCAATTGGCAACAAGGGNTAACAAAtttaaa
aagggcaaaaaaatatcagaagGCCCTACTAGCAATTGGCAACAagggaa
aaataattattttttattgaaaaacttttcccAATATCCATAATTTctta
atatttcttttgattgaattttaccaattttgtcaatttgattgaaaata
atttcttttgtaaataaTGGACATATTGTAGgcatttttgttattttctc
tcttattattattataagtaAACTCCAACTTTTTGTTTTACAATTCTTTT
TTTACTAGTTACTgttgacaaaaaaatcacataTTCAATCCTCGAGttaT
CTTCTGTTAATTTATGATTATtagttttgcatttttttttcattttgaat
ttttctacagttcatttcttgaaattttgagcaGATTTTTTAGACCAATG
CATTTTTTATTTGGCGATATATAATTAGTAATAATTACTTTACACAACAA
TCATTAAAAGTGCTTGCCGAATAATTTTGATattaacctcgaacttttaa
aATCTCGTGTAAAGGATTTTAGTGCCTGCAAGATAACTTCATAGTGTATT
TTTTTTCGTgtatagtttttatttttcacttttttcttaaagAATTTTCC
CAGAATTTCCCCTTTGtagtttaattttaaaaaacgattttaatttattt
gttaTAGCACCTAAATTTGGTAGTTGTTCTCAGATCTCTTCTGTCTTAAC
CTCCTTGATACTACTCGACTAGCCTTTGGTACATTGTTCATATCACTGTC
ACAACCCTCACCTATTGCATTATCATGGCATTATGTAGACTGAAATCTGC
CCCGTTAAATTCTTATTAGAAGGAGTGATTGAAACTAAACTTCTATGACG
AGCtccatcaaaacaaagtttcaaTACTTCAATACAAATGTTCTAAAAAA
TTGGCAATCTGCACGTTTGAGACATTGCTTTTGAAGGGGAAAAGATATGA
TTAAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047481TCONS_00047481Clytia hemisphaericatranscript
TCONS_00047482TCONS_00047482Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047481-proteinTCONS_00047481-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:120341..128796 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
FAM219Aprotein FAM219A isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.46	8.22	31.7	36.69	14.14	10.46	13.22	14.89	14.49	16.72	9.8	9.61	8.08	7.23	9.04	7.75	14.09	11.53	6.88	11.22	8.26	8.32	8.36	10.15	7.68	9.62	12.04	7.65	8.58	7.54