XLOC_030973 (gene) - C. hemisphaerica

Overview
NameXLOC_030973
Unique NameXLOC_030973
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_146:232643..241818+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030973 ID=XLOC_030973|Name=XLOC_030973|organism=Clytia hemisphaerica|type=gene|length=9176bp|location=Sequence derived from alignment at scaffold_146:232643..241818+ (Clytia hemisphaerica)
AGTcagtttttgaaacaaaatggaATGAGGGATGCTATATAGCACATGGG
CTTGGATACAAATCATTTGATCAACATTCATTGAAACAGAAAGCACTTAA
AAGTAAGTAGCTACAGAATAATActttcttaacattttattgaaaatatt
ttcagtctTCAAAGGAAAGACAATTGCTCTGCTTTGTAAAGACAAGTCTT
AGAGGCTACATAGTCCATTCATTACCTTCTGAGTAATCGTTAACAACTTT
TAATTGGAAACGTTTCCTTTCCCGACAGCAATAAAAACAGATTGCAGTAC
TAAACCATTTCTCAGATGATAGTGAATGGACTATaacctttttttataat
caTTCATCAACCATCAACTTCATCATTTTATTCTTTTGGCATTACTGATA
TTTTAGAGAGTGAAGTCATGGATCCCGCCCATTTTTATCAAATGACGTCA
GACCCACGTGGATTTTGCATCATCATCAATAACTCCTTCTTATCCACAGT
TGAGACACGTGATGGAATCCTACTTAGTCAGAGAAATGGTACCGACGTTG
ATGGTAAAGCTATTGAAAAGTTGTTTGGTTGGTTACAGTTTAAAgtcgaa
acaaaagaaaatgtcgGTAGATCGCAAATGCTGAAAATCTTGCGTGACTA
TGCCTTAGATGACAGAAATGTAAATCATGATTGCTTGGTGATATGTATCT
TATCGCATGGTTATGAGAAAGGAATCTATTGCAATGATGGTCAAGAGATG
GATTTTGCTGAAATGAGAGAATATTTTAATGGAAAGAATTGCCCAAATTT
GAATGGAAAACCGAAGTTATTCTACATTCAAGCTTGCCAGGGAAGTGGAA
AAGCTGAAGAATCACACATTACCGATGGTCCACCGAGTCTGTCTTTAAAA
TCTGACCCAGTTTCTCCAGGCCTTCAGGAAGGTGCAACCGTGTCTGCTAG
TGATAAAGAACCATCACCCCCACCATCAAGCTTGGCCCACTATGCTGATT
TCAGCTTCTTTGTCGCTGCTACTCCAGgtatatttatttaaaaaatccaa
aaattgacgaaaaattgactttcagaGGTTCCTATCCTATGGCCTTGGTT
TGGCTTCAGATGCCTGTAAATTATGAATGATCGATGCAGAATTTCATGTA
GAGtaaaaaatgcaataaataAGCAAGCAAAGGTTTCTTTATCAAAAGTT
TTGGCCATTTATAGTGTGTCCGCGAAAAAATTACCTGAAAAAGTACCTTA
TCGGTAGAAATTTCGTCggtaaaaagtgacgaaaaaatcGCTTAGTGACG
AAATTCTTTACTAACGAAAACATTTAACCGACGAAGTCTCTACCGATAAA
GTAACCGTCGTCGGTACCCAGcagcagtggcgttgtgggaaaattttctg
gaggggccaaagtcaattttttaaaaatggcgcccccccccccaaatttt
cgaaagTGGTGCCCTcacccaccagtttctaaacttttactaaatcattt
gcctaggcataatgaggaaggaaatatttaatggagaagagtagatatat
ctttgatgaatggaaaaagggaaaaacaggccccaccatggttgggaccg
gctagaaaatttttaaaaatcgactgccaagataccctaaatcactaaat
aaaaatagacaaatttgacacttgctagagtgaaaagaaacttaaagaaa
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtcatgatttcaatattgttgtcagcaaattagtcttggggcgcagtta
gattttcatttaataattatgctatattgtacaaaaaaaacttgtaaaat
acctaaattgcaaagaagttaccaattaactttattgcgagagaagcgag
cgaaaaaaatgcaagtattttaaaatgatctcagtaaaattggtcctggg
cgtAATCTAAggcttgattgattgatgatttataagattggggcgtttag
aaaatctcttttggcgccccttgctcttcggcgcccctttaaaaaagctc
cgctgggggggggggggctggcccccccctcccccccccccccccttaaa
aaggccccggggggggggggggctggcccccccctccccccccccccccc
ttaaaaaggccccggggggggggggggcatggccccccggacccccctgc
cacaacgccactgccaGCAGCGTGTTAATGTAACAGTGaaatctaatttg
ttcgaataatAGACAATGGAAATTATTTATAAGGTTGAGAAATACTCGAG
ATTTATGTTCCAGTGAGCTTTTTAGGCTTGAAGAACCTACAAAAATTATA
TTAGCCAAAAAATCTGGCTCTGACTCTTCTTGTTATacgatacacgcttt
tttataagaatagtgtactttggatgagggtcaagtattcttaagaaatc
tACAAGCTAGGCTCACAGTTGGCCTCTAACCGATCTTATTTTACACTATT
CTTGAATCGTATTTTGAGGGATGGTTTTCCCATGCATCGTTGAGGTTTTC
TTTGAAGGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAGTCAACTTGTCAGGTATTGTTGTTTTAT
CGTAGTAGTGGAGGTGTTTGTAAACCTGTACCATATCACAAAATCGTCTT
CGAAATTCGAGTGTTGGTAAGACGAGAATTTTGAGCCTATCACTATATGA
AAGGCTGCGGTACGTTGGGACCTATCTTGTTGCACGTCTTTGCACTTCCT
CGAGTAAGTTGACGTGTTTACGTAATCTTGGTGACCAAACTGATTGTGCG
TACTCAAGGTGTGGTCGGACAAATGTTGAGTATAGTGTACGGAGGATCTC
TGGAGTTAAGCTGGTGAAACCTCGTTTGATGACACCAAGCATTGAGTTgg
cttttttttacttgattggCTATATGGCCTTCAAATGTCAATTCAGCATC
AACCAATATACCCAGGTCTTTTTGTTTAAATACGTGCTCAAGCTGAATAT
CACCAAGACGATACGGATGAGCGTGTTTTATATTTACGAATTTGCCGATT
GTAAGAACGTGACATTTATCCGGATGGAACNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCATC
AGCTTGCAAACCACGGATGTTAAACTCACTGGTCTGTAATTGATGGCCAA
GTTATGCGCGCCTTTGTTCTTGAAGATGGGCGTGACGTGAGCAACCCTCC
AATCCTCAGGTAGTACCCCTTCAACCAGTGTCTTATTCATAAGCCTTGAA
AGGGGCTCGGAAATTTGGTCGACAAGTTCTTTCAACATTCTTGGATGTAT
TTCATCAGGACCAAAAGATTTGTTTGTATCCAGATCTTTGATCTTCTTAC
TTATCATATCTTTAGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
CGatccgctcaaggccgcgcaactttggtaggatttgttgacttcaaatc
ctaccaaggagattgacttctagcctttcgggcttatacttcattggatg
TAACATAGGTAAGCCGATAGCGACTCTTTTCCTCTGGACACGAGGCTCGG
GCCCATTTCCTGTGCAATCGATTTTTTTCGCTTACTTCTCTTTGAAGATC
ATTTCCTATTGGTATAGACCCCTTGCTCCTCCAGCTCTGACAATCAAATT
CTTTCAATGGAAGATTTCTAAGCTGtaataatttgtttttaaatgattGC
CAAATTTCCTCTACAGATTTAATGTCCATTGCATTGAGTAATCCCTCTTG
CCATTGATGTGCTACAAGAGACTGTTTCATTGCAGCATAATTACCATCGT
TGAAGACGTATCGCTTTGAGTTAACTTTGCGCTCAGTGTAGCAAGCAAAG
GTGAAAGCCAAAACACTATGATCGCTCTTCCCTAGTGGGCTTAGATATTG
TAAGtcacatacacgctttttcttttataagaataacttttataagaata
tcagggtgagatttcgggtttaaaacaataggcctattgtttagagcaat
agaaaaataagaataatgctcaccctcaaccaaagtacactattcttata
aaaaaaagcgtgtatttgatTCTCCTCGCCCGTGAAGATTAAATCAATCG
TAGATGGGTCATCAGTTCCTCGACAACGTGTTGGCTCATTCACGTGTTGA
TGTAGAAAGGAGTCACGGATTGCATCTAGAAAATGCTCTACCTTACTCTG
CTCGATGTGCGGCGTGGTCCAATTTTCCCAGTTAATTTTTTAGACTTcac
tttttttacaaatatgagaaatgatcaatttgagagtttcgATCTTTTca
gtgaacatttgggttaaaattacatttcttcctcaaagcttcaatttatc
ttaTCTCTAACAAAAGGAAGCATTTTTTCTgctaaccaaatacaaaatga
ctgtattcttatcaaattctgtgaaattcaccttagagggtattcttatg
ttcttacgatttggccaattttcaccctgatattcttatagaagatattc
ttatgaaaaaaaagcgtgtaccgtTGGTGAGAGAGCCAAACCACACCTGA
CACGCCTTCTCATAAGGTTATGAAGTGtcataattataaactttttgtcg
aaaaaatgtttgtcttttcaactaAAACATCCagggtgtttttccactga
cGGCTTAAGCTAACTGGATTAATGTAACTTTTTCATAAAAGGATAAATAG
CCCAAGCTATTCATATAATCTTTGGATTAAAAGAGATGGTTGTAcgataa
ttttttcttttcagaaaaatattgtattTCTCAAAGGAACACAGGAGAAA
GATTTTCACGCATTTTCTAATCCACTAATACATGGTCGAGGGCATTTACG
AGAGAACAAAAGAGCGAGGATAGGCGGATCAGAAAATACAAAGGTTTGCT
GTGggaaatgaaattattttttacaaaagaaaacataaacgtgtaaccat
ctcttttcatccaCGACttatggtcgtgttcagacatgaaagtttaagtt
taaggcttaagtagtactaagttgatatgagaattaagaaatgcaacgac
ttaattgctatttcatcttttagatagattacataagagaggaaaaagga
atcccattttgaatgtttgagtgagcaaagatttattatacactggacaa
acgactcataaaacgatggagagcgatcattgtattttcattgtttctga
aaacaattgatgttctagctttgaccgcaaaggacaactgccatggcggc
tcgaagatgtctgatttttaaaaatgtttatcagtcttattttaaaaagt
tctctagctctttctttttgtacatttgcNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNgaaattttcaattggaaatatctttccaa
gactgtccccagaagagctgaaattaacatacataagacttgagtgtctt
ggctccactgtggtatgaaagtCCTTTGGAAATTtattatacacaacacg
tcttttgcatctttctcacagcttgaaacgtcataacgacttataattag
caattaagtggaagaatctgactctcataGGACAGTTtgaagtctctttt
gggaattggacgagtgattttcgataagaaatgtaataaaaatccttcga
aaaatcatataatgagggaaggagagtgaacaataatatcattactgcgg
acatagctagtacacgagaaatcggcaaaaatctgttacttgtatatcca
gtgtataataaatccttggagTGAGGCTtcgtttttgcgttttttatAGA
GGAGATCGCAAACAGTTGATAGTATATACACAACATCTTAAAACTGCAGA
ATGGTTGCTAGAATTGAAACATTAGCATTGCTTCTAGAGACTTATAGGAA
GAAAAAATTGCTCAGAAAGAAATACGCTATTCAGAAAAGgaatttcatgt
ttttgttgCGGAGTAtgaagtcataaatttcactttctcctttcataatt
tacaaaaggagcatgcttttcacttgcgaattctgatttcgtctattcag
aaaactgtgatAATAtcgcaaaaactttttttttaaaccagagggtgatt
cctttttaaactttggtttaacttatGAGGAGCGTGCagctaaatacaaa
aggaatataaaagaaacatgtagagttaattactttaaaccttggtctga
acacgacctataTGAATAGTTTTGGGCTATTCAGCGTTTTATTACACGTT
CTGTTAATCCTATTAGCTTAAGTCGCCAGTGGAAAAACACCCCCATTGTC
TTTAGACGTGATAAAGAAAAATATCGGGTTCAGCAAACGGCTTTTTGTCT
CCAGGTTTAAAACTATATCCATGAGTCGAACGCTTCAATAACCCTAATAT
TTAGTTTAATGTGTATATCGTTTGATCTTTTCCAGGGACAGTTTCGTATC
GTAATGCAAGGGGCACGTGGTTCATCCAAGAGCTATGCAATGTGTTTACC
GAAAATGCTAAAACCTACTCGTTGTCTATGCTTCGGCAAAAAGTTAATAG
TAAAATTGCAGAGAGATTTCAGAAGTTACCAAAGAGTAAAGGAGTTGCAA
AAATGATGTCGGACGGTGGTTTGGATACGTTGAGAAAAGAAATTCGTTTC
GGACCAAAAAAATCATATCAAAAATACTTGGAGGAGGATGAAATCTAGGA
GACGTTTAAAATTAAGCTCTGGTTTAGTCGGCCCACTTTtagccctgcct
attctaattgctaGAGTTGGCATAAAGTGGATCGAAAGTCGGCTGTCTAT
GTTTGACTTTAGACGGCCAACTCTTTGCCAACTTTTGCGAAACAATATAT
AGCGTCATTGGTTGGTTGATTACGTcgcaaattttaaattttgatttcaa
gcatTTTATTACTATCTTATCATTATTAAAGTACACAACTTAggttaacc
ctttaagtaccaatgacgagtatactagacatgcgcagtttgagttagaa
atcgtcaattttggtctaactcgtag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048732TCONS_00048732Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048732-proteinTCONS_00048732-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:232643..241818 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15	1.18	0.96	1.58	0.69	0.69	0.74	0.77	0.6	0.47	0.55	0.77	5.25	5.15	1.89	1.74	0.31	0.72	4.71	5.73	1.08	1.08	0.77	1.44	1.71	1.35	0.34	0.61	0.82	0.44