XLOC_031420 (gene) - C. hemisphaerica

Overview
NameXLOC_031420
Unique NameXLOC_031420
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_160:50088..54532+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031420 ID=XLOC_031420|Name=XLOC_031420|organism=Clytia hemisphaerica|type=gene|length=4445bp|location=Sequence derived from alignment at scaffold_160:50088..54532+ (Clytia hemisphaerica)
AATGAACTGAGATATTCAAAATATAAACTGATTAAGATACAAAATTGGGT
TAAGATACAAAATGGGGTTAAGATATAAAGGAGGGTTCAGATACAAAATG
GTTTGGATACAAAATaatacaaaataataaaaaaaatccaaaaactagAA
AATCAACGAACAGTTTTTAGGGTTTTCATCTGATGTTTGTGCGTTTCGAT
CCATTTATGAAACTTCGTCATGTCAAAATTGACGAGCATGCTTTcctttt
gatttgaaaagtaTTTATATTCTCGTCCAGGAGTTGATTGAAGTGCCTTT
TCGGCCACAATTTGTTTTACTAATTTAATGAGATCTCCGTCATCTCTTTT
CTTTGTATGTTTTCCTGAACGTTTTTTCAATTCGTTTTCATCGTCAAACT
TCTCTAGGAGCTCCTTATTGAAATGAAGTGCTTTTGCGTaccttgaaaca
aaataaataaattgtatAAAACCCAGGTTTATGTAAATTATTATTTCAAG
TCTTAGTTTTACTGAAATTGTTGGGATGGAATAGAAATAACTTGGGGCGA
AAAACATCTACATTAACCTATAACCTTAAAGTATCGTTTCAGATAAAAAG
AAATAATGAATTTATAATAGCTACCTTGTCATCACTTTTTCATCCATGGC
ATTTGGACCTAACTTTCTCTTGATGGTTTTCACCAGCCGGATGTAATGCT
CGCATTGCAAATCCAAAGGTATGTTGTGTCCTGAAAGTAAAAGTGATTGA
CATAAATATACAAATACTgctatattttttatattaatcTTCTTTCCATC
ATCCAACAAAGCAGACGATTGTTTAGTTTCCTTATCTTTTTCAGGTCATT
TGCAAAAATCGAAAGGATTCATTTTATGGACCGAAAACTTGTTTGTTGGA
AACAGAAGACACCTGCAAAAGGAACAGTCAGGTAGATTATATTACCTTTC
CCATTTTTGTTTCTACAAGTGCGGTTCCACATCAGGCTGTAAGCTTCTTT
CTCACTTAAAAGGCAATTAAGCTGCAAAATCAAATAAAACGCCTCCACGT
TATATTTTTTGCTATGTAGTCCATCTTTGAAGAAGTATGGGAACAGGAAC
TTCCAGCACCTTATCACTCTGTCTCCATCTCCTTCTTTCACTGCatcgga
aaaattttcccacagaGCTAAATACTCCATCAGTGCGATCTGATAATTCA
ACATGTCATCTTGGATCTGAAAGACAAGAAAATCCTAAGCTAAGGTCTCA
TACGTGTGAaccttaatttcaaaatttaaattaaatcattttttgatttt
aaaaaggaTTAGCCTTTAAAGATATCTTGACTTACGTTTTCTACTTGATG
TTCTTTCTGTAGATGTGTGCGAAGAGATTTTCCAATGAATTCGAAGAGTT
TGTCACACAAGTTGCACTTGAATTTCCCTTCTACACTAATGAATTCAACT
TGCTTCTTTGTAAGATAATTCTCGGCAGTTGACGAACGTAGAATGTAGTT
GTCAACAACCTCTGTGCAGATGCTCTCCAACTTTCTGTAGAAATAATAAG
AATAATCGTAATGATAATGATAATTTATCATCagtgaaacatttttttaa
atagaagATGTTTTGCGAAAATATTCTAATAATTAAATCTAACCTCCTTT
TTTCTTCTGGCGAAGCCAACTTTTCAAAGTAATCCACGTTAAAAGATTTG
GTCATTTCGTCGACGTCACTGATTTCGAGTATATCAAGGCCGGCTGCGAT
AACTCTAGCTTTGAATTCGACGTCAAGAAAGCTTCTCACAGCGGAATAAT
GCTTTTTGACTTCTGTTGCCACGTTTCTACGGTTGATGAAGGACTTATCA
GCCCCCAAGGTACATTTGTCCGGGAAGGAATTCTTGAAGAAATGATCCAT
GGCATACTAAAATATAATGTTATCGCAATCAATAGTAAAGATATTCATAT
TTCTGCTAGAATTAGTAGAAAACCGTAAGAGCCATTTAAAATACCCAAAT
CTATTCTTACCTGCAATATTTTCATGTCGAAATGAAAATCAGCCACTTCA
CAGTGCATTCCTTCGAATCTTTCTTTTGCGTCAAATGCGCCAGCTGATTG
AAACATTACATTTATACATCGCTCAATGGTTAGCTGATCTCCGACAATTG
CTTTTTCCGTAAATGTTATGTCGTCCCCTTTCCCCGAAGTTGACTGGTAT
TGTTGGAGATCTTCGAGAACCTTTCTACACCCTTCATTTGTATTTTCATT
CTCGTATATTATCCCCAAGAAAACCTGAAATTTACAGATATAAAAAAGTC
TAGTTTTAAATTTAAGATATATCTTGCAATGTCTGCTTCTCTAATCGTAA
CATCGTAAAAGACATGTATTCTTAGTTGCACACAATGCATACTTTTTACG
ATTTGGAGGATTTTTAACGTTTGAAATATCATGATCTGAAGCCCATTGCT
CGGggataatagacgatatcggatttagataaatgcaatgcattctggtt
tctagggactctcaaaggaattataatctatttaattgatctattataat
tcctttgagagtccctagaaaccagaatgcattgcatttatctaaatccg
atatcgtctattgtccCAGCCAGGATTTGAATTTGAAACGTGAATAACCT
TATAAATAATCTTGTGAATAATCTTAGACTTACAGTGTCactcttttttc
tcatttctttaGAATGATCGTGGCGGATGTGACGGATTACTTCAGACTGG
AATGGTTTCAAGCATTTTACGTGTTCAGTCAAGATTCTCGATATTAACAC
AATATAGTTCAGACGTTGTTTTACATGTTCGGCTGGAGAACAAAGAAACG
AACTGTTATCCAATTCGTCAATGGTGTATTTTGGGTGCGTTCCGCTTAAT
TCGTCAGGTGGGGTGACTCTATCAAAAACAGCAAGTTTCGCAGTATGGTG
TGTGCTGACGTTTTGGTTGTTCTCGTCCATGTCTGACACTTTATGGGTGG
TATCCAAATTGTCGATAACAGCCTTGAAATCTTTTTCAGTGACTATTGTG
GAAAAGAAATAAGATTACTACATAAAATACATTACAACGGAACTATTATA
ATGCtcgaaaacaaaacttttttaagaCTAGAACTCCCGTGATGAATATA
AAGAAAGATTGATTTACGACGTACAATTGAACTCCAAGGATTTTTTAGCG
GACTTTTCAGTATTGGAAATGCTTGGTCGTTCAACCGTGGTAATTTCAAA
GTTAACAACAGACTGTTCAGCCGCGACGGAATTGGATTGATCGCCAGATC
GTTCAGTCCTGATGATTCTGGGATTGGCGTCGGACCTTTTGGGTGTAGAA
CCTGTGTAAATAAGAAAAGGGTTTCCAACGTACGTAGCTTTATGAAATGG
TGTAgataaatattaaaattattcTGACTatggaaaaagttgaaattaaa
TGATATTGTTACCAGATATTGGTGGAGCGACCATTTTCTCAATAACGGAT
TCTTCGTTTTGTGTGTTAGTTTCTAAACGAACCAATAAAGCTAATAGCAT
TAGATTTTGTGAAGGCTAACTTTCGCAGATTTCGTGAATTCATGCtgaat
ttttaatttgaaaaggCGTCATTTCTAAAATCATataaacaaatttctaa
aattgtCCTTATTGACGTTAAAGAAACGTTAGAAAGTATATATAAACAAC
TAGTATGTAGATTTTGGCAGTATAAATCCAcgaaatcgtgaaaatattat
cCCAAAAAGCGTCATCTGCAAAATCTAGCCCTTGCAAAATTAAATCATTT
TAAAGTTATGTAAACTGCCTTTAATAATCACGTTTCACGTTTCATCATAT
TCCACTCAAAATTCAATTAGTAGCACTAGAAATTAGCGTGAAAATTAAGT
AGTATCCTACCTAAAGTTGTGTTCTTCTCgacatgtttttcaaaaatctc
caaattagTTTGGTTGAGAATGTCTAAAAATATGATgtattttttaaaca
taatacaatacaccttttcataaataacgtcacgaacatcacttgcctcg
ttttgaaattattgccatggtgattaactcccagcggattttattacagc
tactttctatttataaaaaaatcattcaaggGTTATCATCATCAAGGGAt
atgatcaccatggaaatttGTGTGAATACGAGGCAattgatgttcgtgac
gtaatttatgaaaaggtctattcgtgTAAATTTTCATAGTCATTGTACAT
TTTTTAACTAAATGATGATTCTCGTGTAATATTTAATAGTTCCTTCGAAT
TTGTTGAAGAATAAGAAACCAAAACTAGACACTGTCTTAAATTTAACTAG
GACTTTATAATGAGTGCTAATTTagagaaattgaaaaactttagatatat
tttaggcgtacaaactttcgcgagcataaacttttacGAATCAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049531TCONS_00049531Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:50088..54532 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34	0.37	0.19	0.14	2.55	2.4	2.96	2.75	2.98	2.41	2.98	1.86	2.51	1.53	3.18	4.57	4.39	3.98	6.15	8.18	5.23	5.86	2.97	4.5	0.11	0.1	10.26	8.59	6.95	7.38