XLOC_033071 (gene) - C. hemisphaerica

Overview
NameXLOC_033071
Unique NameXLOC_033071
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_213:692386..701035+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033071 ID=XLOC_033071|Name=XLOC_033071|organism=Clytia hemisphaerica|type=gene|length=8650bp|location=Sequence derived from alignment at scaffold_213:692386..701035+ (Clytia hemisphaerica)
GAGACACAAGATGATTGAAAACAAGAAAGTTCCAAAATAATGAAGAGAAG
AAGAGAAGATTTGATGGGAGTTGATGATTGTTGACGGTTGAATCAAATAA
ACACAAATCACAAATCACTATGTTCCAACATTGCAACCACGTAAAAAtcc
ttattttcatcatttttattacttctaCATTTGGTGAGCAGTGGCAAGAA
CCTACTACAAAAGCACCAGTTCCCAAGGCGCAAGAACATGTCGGCCATCC
TGGACACGAAATCCCACGTGACCCTACTACAAAAGCACCGATCATTTCAA
CGACACCAAAAGTTGATGATCCAGTTATCACAAATCTAGCAGTTATGGAA
GCTAAAACCACAACAGCACAAGTAACAACCCAAAGCCGTGCACTAAAAGA
GAGCACGAAGACACAAGGGCCATCAGTTTCTACAAGTATTAAAATCAACC
CAGACCCAACAGGAACAAAACTACTCCCAGAGGACTTAAATCATGGCGGT
AGGAGACACATTCATACAGAGTACGGGACTGTATACGCTACTGCTGGACC
CATACCAACCAAAACCCTTCCCACGACAAAAGAACAAGCGTCCCCTACAA
CAGTCTCACCAAAGGTGTCAACTGCAGATTTCTTTCAGACTTTACCGACT
TCAACAACAACTGTTAAAACAAAACGCCCCATCAAATTTGCAAAGCAAGA
ACATGTTCGGATGAGCAAGGCAGATGTGAAGCAGTTTATGAGACGAAGTA
ATCGAGAGAAGGAACAAGAATTAATTCTATGTGGTATTAACGATCGAAAG
TATCTTGAAGCAATCAAAGAACACATAGGGAAAGAGGAAGTTGTCAAATA
CAACAGTCTTTGTGGGGCTAATATCACAGTAGCATTTTCCGAACTCCCTC
CTCTTGTTTACACCAATGAAACTGATCGAACAGTCCATGGTATTTTACCA
GGTGAGTGTATTTTCTCGTACATAAAATCCTTGATTTTCCCGACCTCGCT
TAGCAGGGGGACTTGGCAGGGCGTTAGAACATACTTGAATAGGGTTATTT
TTTGTGTTGAAATGTTAATGATAATGACCGAAAATCGATCATTTAAACTA
TAATACAGGTTTCCAAATAGATCATTCGTATAAAAAGACACGAAAATCTA
AAGAATTAAGATCAACTGTGATTGACTAAAACTTGCATACAAAGTAGACT
AACAGAGCTGGATGGCTGGATGTCGATTTTTAACTTCTCTTCTCCAGAAA
CTAACTCACTTAAAGTTCTTTACACCTTTTTAGAACTGTTAAAAGAGGGT
CTGATTGATCGCTGTTGCCTGGGTTACAACAATCTACACTTCATCAGAAA
GACATATAGTGATAAATTTGTGGATCAATTTCGCCCATTGAATGAATCAC
AAATTGTCCTCCCTGTGGAAAATAACAAAGACGAAGGGCTTATTCTGGGC
TTCAAATACAGCCCTCTGATTCATTTCAAGTCAATcaaattcttttcaaa
gaaacaaGAGAAAGGCCACGTGGAGATTTTGAGGAATTTGGCGCAAAGCA
CCCTGGAAACATGGCCGTTGTTTGTGGTTGCTATGGCATTGACATTGTTA
GCTGGTACCATTATTTGGATTATGGTGAGTCGGAGGATGGGGATGAAAAA
GTTAGgataaaatagttttaactttttatcaTGATAGGTCTATGCAGATT
CAGCTGATTATTTCCAGTACTGAAGGAATGGGCACATTCTGAAGCTCTAC
CTTTTCAATTTGTTAgctaaaaatgaagaatatgaAACTGTAtcttaatt
caaaaatttacGCGTAATAAACATTGGAACCATCGTATTGTAACCTCCAC
CTTCTCCTTATTCGCAGGAAAATATGACAAACAGTAAAGAATTTCCAAAG
CGATTTCCACATGGTATTTTCGACGGTTTTTGGTGGGCTTTCATCTCAAT
GACAACTGTTGGGTAAGTGCGCTTTATTGAAACTTGTTCCCAAGAGAGCT
TTTTATCAAGAGTTACCCTCTAAAGTAGATTTTTAGGGGAAATAGTGATT
CTTCGTGATGAGACATAActggcttttccagaaaaagaagtttGCAGCCT
TAAATATTCTTCTTTAATGCGCATGGTTGACAGAGAACCATTTTATTGTC
TGTGATAGGCCTACACCCTTCTGGGAAACACAACTggatttcaaattatt
gtaCCTTCCTCTTTTTAAATATAGCATGACGAACTCTTGTAAAGTATGGC
GGATTTACAATTGAAATAGACCTATTGCGTTAATTCCCAAATATAACATA
AAAATTAACCACATTTCGATCGCACATCAAAGATTGGTCAGAGTATTAAG
TTATCGCGATTCCGATCACAAGTACCATACTAATAAAGAAATCAACTCTT
TATTATCTTATTTCAGCTATGGAGACAAATCACCGTTGACGTTCTTAGGC
CGAACATTTGCTGTGTTTTGGATAGTGATCGGTATCACCATCACCAGCCT
CTATGTGGCCACATTGACGTCAGTACTAACCATGGAATTATCCGGAGAAC
GACCTCTCATCATTAGTGGCAAAAATGTACGTTACATCGTTATGCAAATG
TGTTGTTTTATGACCCTTTTTGTaccagaatttttttcatgaggCTTGAC
TGCTCTTATCTTTTTTGAGCTTTCagcttaaaattgttcttactcTAAGG
ACCCGAATAGTAGGGTGGATCCTAATAAGAATGGGGGGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaggggggggggg
ggcaaaaattttcgaaaataaataacCGAGTGGGAACATTTATTTGGAAC
CTTGGAGTATACTGCTCtgaattttaggcaaaattgaagtttttttaggg
cttacaatttttgtttataacttTGACCCTCGATTTTCTTAATATTTAGT
GATCGCTGATCAACATTGATATAACAAATGTAAATTTCGTATTTCTAGCG
TTTTTGAGCTTTATCAACATTCttaagctaaggctacactgatagttttt
tcaggcggctgcaatgcaattgttgcattgcagccgcctgaaaaTTGTTG
CTGTCTAGCCATCTAAAAAAAGGAACcaggaaaaacgtcaaaaaaacatt
cgaattacaaaacattcgaattataaaacattcgattttatcaaaaacat
tcgattttatcaaaaacattcgattttatcaaaaacattcgattttatca
aaaacattcgattttcgaaGGTCCAACGTTCGAATGACGTAATAAGATTG
GAATGTCAGATACAACGTCAAAAAAATTGCAGACACTTGCAATTTGttct
gcaatatttttattgcgtTGCAGAGCAATtgcagaaaaaattgacgtgct
acattttacaatttcttgCGCGCTTGCAACGCAACGCtaattgcattgca
gccgcttgaaaaaactatcagtgtagccttagctttaTATAAACTGTTGT
TTAAAAAATCCGGATTGTAAAAAACACGATAAGGAAAATCTTCATACCTT
TTTTTACCACAATGATAGGTTGGAGTTTTGTCAAATCCCGTACACACCAT
GAGAGCAGTCAAATTGCATCGTGGAATACCTATTCGTAAGTAAATAAGAT
TTCTAAAGTACATTTgttttaagtgtgcactcttctTTGCTACTATGTGG
AAAACGCtatttgttttataagaatactcTTTAttagaatgtccatgatg
aaaatggcctaaaaattaagaataatgctaagaatatcaccatcatgaaa
tttttcTACTCGGgttaagaatgtcatttttagagcattaattacaatta
cccccaagtaaggcttatcctttcacaaaaatgccattttatgcttgaga
cgtatgtactaaatgttaaatctagtctgaattaggatcctaacctaaga
atgctgtaagaatattttaggacgattttcccaaaaaaattaagaatatc
catgatgaaatggaattacactattcttataaaaaaacgtgtactaatTC
CATATGGTAGCAGAAGAGAAGGGAAAGGACTCTTTAATCGTCTAAAGATA
GATAGATTCTTTTACTAATACAACCAAGTTAAACAGTATCGAAAAAGAAT
AGTTTTCAAGATTCATTGATGAACTGgtaattgggcttttccagaaataa
tttgaatatgggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcccc
cccccccccccggacagggcaaattttgatgatttttcgctactccccgg
acaatatatcctctaCCCCCATGTActgacattttctggaagagcccatt
gatGAATTCGAATCATCAAGGGTAGAAAAGATTTCTCTATTCCACaagaa
aataggattttttcCTCTATCTACCAGAAGAGATAAAATTCTGAATATTG
ATCATGCCAATGcaagtttttaattttggttatcaaataatacacgtttt
ttttataagaacaaactatataagaacatataaagGCTTCGagggccaaa
atgttaagaacaagttaagaacattttaaggctttgtagacactaaaaca
cctattttcttaggaaaatgacaaatatactcacaaaatagtgaaaataa
aaacaggcTTGGGACAtgttaagcttaaaactcaaaaagttaagaacatc
taaaagcttcaaaattttggatgttcttataacaaaatgTGTATGCATAG
TAAAGTACCTCCGAGAAGACATCTGTCATCCTTGTTGATTAACGATCTAT
TCTTTCATCTCTTTTGATTTAAGGATACGCCTCGTTTGAAGATATGATGA
GAGCcctgaaaaaaggaaatattGAAGGTAAATAATTATTCTACTCAAAA
AGCCCTAACCaaagaaaatacttaaatactctgttttataagaacaatga
ggctcaaagtaAGGTAACAATTTTatgaacaatgctgagcctaaaATTCC
TCAATTTTTAGCAATTAAGAGGTCGAAGTAGTAAAAATTAGGTATAAAAC
CTAAAATACCTCTATTTCACCTTGTAATAAGAACATAATAAGAagaattt
gaggctcaaagtgcaaaaaaataagaacagtagAGTCTGATAAAAAATCT
ATTGGTTTTTATGAAACAAAGAGAGTATACTACCTTCAAAGTGAGGTAAT
TAGAAAGAGCTCCAATTACAGAACCGTATTTCCTCAGATAAGTTCCACAG
CGATCTTTAAGTTTTCAACATTCAGCACTCGTTGAAGAtaggttgattga
ttgatcaacatctattttcaaaatgatactTATCTTAAAATTGGACTTTA
CATCTTCATTGCAGGGATAAGTAAGTGTGTCCTTATAGTCTATTTTGaga
gaactaattttagcgggaactaattttcgcggtttttgacAAAAGCGCGA
AAATTAGATCCTCGAATCATAAAATTTGgctatttttcatttaaaaaatt
gaaagatccctaggaaaaggaaagaaatgtgtccaaaataaggcaaaacc
TCGAAAATTAATTCCGGAGAAAtgcgattttttggaattttttttcgatc
gcGAAAACtagttcccgctaaaattagttTCCTTAAGGTATAACTTACGA
TTAATGTATTTCAGCTTTTGCGATTGATGATATGACGTATAAAATCAAAG
CAGATGATATCAGTCGGTTAGGAAATGACGTCAAAGTTGGTATCGAGCAT
AAATTTGATTCCCAATCGATTGGGTTTACAGCCATCAATGAAACTTNctt
tattttttatgaaaatatgagcaattttgtaaaattttgaatggcAGACG
ACCTACCAACAGAAAATTGGATTTAGACAGGTGAGCGCGTCCTCAAACCT
GCAtgatgttatacatttttggaactGGAAGAGATCAGcgctgtttgttt
tttttgtctcattgacccaatcaaatcctacaaaaaattattcagttttt
tctgGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTaggaaaaggaaagaaatgt
gtccaaaataaggcaaaaccTCGAAAATTAATTCCGGAGAAAtgcgattt
tttggaattttttttcgatcgcGAAAACtagttcccgctaaaattagttT
CCTTAAGGTATAACTTACGATTAATGTATTTCAGCTTTTGCGATTGATGA
TATGACGTATAAAATCAAAGCAGATGATATCAGTCGGTTAGGAAATGACG
TCAAAGTTGGTATCGAGCATAAATTTGATTCCCAATCGATTGGGTTTACA
GCCATCAATGAAACTTTGATTATGATGAATAAGGCTTTCTTGGAGGCTTA
CATGGATGCTCCAAATATTGAAATTGTGAGTTCGGGATCGAAATTTCTGA
TTTTGCTTATgcttcctttttttctcaaaaacttatttatttcttcattt
ttaattgagCTGAAAAACTAGAACgtatgaaaagaaaattgaagaagaat
gaagacttttgtgaaaaagaagattttgaaaactttatttTCAGCGAAAA
AAAAGTTATCGCCTTTAATTTAAGTTACATATCCTTCGACAGAGCCTTCA
AAAATGAGAACAAGCCGAATATAATccaaaattctaataaaaaaggtTTC
TTTTGCTTCCTTAGAACAAAGAACTTATCGACAGTGGAATGCTAGAGAAA
AAGCCAGTGCAACTGTTCAGTGCTAATGAcaaaagatttatcaaaatcaT
CATTGTTGCTTTCCCTGCAATCTTTTTGTTCGGTATAGTTGGTTTGCTTC
TTATTAAAATCAAAGATTGCACTTTTGGATCAGGTACAAGTCATCTTGAA
CGTATTATAATGGAGAGCAAAGAACCAGGAGAGAAATTAAAATATAGATA
AGAAAACCATGGGATATTTTCATCACGGACAAAGGACTTGCGTGGACTTT
CAAGAATGATGAAAACTTCAGAAGACGAAACGAGGCTGCCAAGACTTTCG
GATAACCAGAATGGGTTTTATGGAAATGATACCGTCGtccacatgactaa
aggttcaatctcaaaatcagtgtcttggaaaattggaaatcttgcaattt
ttttctgcttttgagattggcctttttgtcatatgaaaacgattgactat
tcctctacatgaaaaagggcaatctcaatctcaaagatgaccaccacagt
aaaactttaaattttgtgaggtactaattttgagatttaacctttagtca
tgtgaacAACGAATGGAAATTACGGACCTGAGTTTCGGCTATTTTTAACT
GGCGATAACAGCTGGTTACTAGAGGACAAAGGCAGTTTAACTATGGTAGT
AGTCGTActtcaaaaatagtcaaaaatattttttaaataaatacctagga
ttgtaaaataaaagaatttcacGAATTCTCTAGTAAAATTATCAATAAAG
AATAATTATAACTGATTATAAAACTGTTGTTAAAAAAACCCTAAATAAAT
TGCAACAAATGTATTGACTAAAGCTCATCCTTTGCTAGGAGACTATCTGA
CACTTTCATGATGATTTTACCGCTATTGAGGTTGGCATCCATTCTTCTAT
GGGCATCGGCAACTCCATCGAGTGTCGTGATACTGTCGATGATGGGCTTA
TATTCACCAGAAACGAATTTTTCCAATGCATGATTTTCAAATGAGTCCAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00052258TCONS_00052258Clytia hemisphaericatranscript
TCONS_00052259TCONS_00052259Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00052259-proteinTCONS_00052259-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:692386..701035 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.26	0.3	0.3	0.52	0	0	0.08	0.05	0.09	0.19	0.18	0.2	4.21	3.94	2.61	1.42	0.7	0.66	3.72	4.14	0.21	0.25	0.07	0.22	0.48	0.25	1.17	1.21	0.32	0.09