XLOC_035643 (gene) - C. hemisphaerica

Overview
NameXLOC_035643
Unique NameXLOC_035643
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_277:192109..195991+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035643 ID=XLOC_035643|Name=XLOC_035643|organism=Clytia hemisphaerica|type=gene|length=3883bp|location=Sequence derived from alignment at scaffold_277:192109..195991+ (Clytia hemisphaerica)
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
TATGTATTATAGTTGACGATCAAAAACAAGAATATCCCAGTAAATTTAAC
CTAATTACAGATGGtcataatttttcttaaaggttttgttttttaaataa
gagtgatatcgtttgcttactcatcacttttaattcacaagctttttcac
attgaattgacacggatgatcggatgtggagcaagattggtcaaaaaaag
GAGAAGAAAAGTACTTTTTTGTATAtgtcagcacaatataacaaaaggta
gacactgtcctgatatgaaatatgtgtctgatatgaaacgggaacactta
tgtaaaaatgaaacctttaagCACACGGTAAACCTCTGTACCTCTGTATA
AAGCActgatttataaagcccaaatggctagatggcgtgctttagctgaa
aagtgtgccgtggttaggtaggaaatcctacctaagtcacgtgacattac
attAGAATTTTAGCGCTTGACCAATAGAAACtacgcgggttttcgaaaaa
caatagcaacaatttGCTTTGCTAAAAGCGCAacttacagaaatctgtgg
cgcttgaaaattatccATCTGAGGAATATAGCCACTTTCATAACAAGAAT
CTTATGACGTGCCACGATCTTTTTTCTGATACGGTGAACTATTTTCCGAT
ACAATCACGCAATtctgttgtcattcccagtcctttgaAACGAGCACGGT
CCTTACGAACCCAAGATGGCATATTTGTCAGATCgcttgttttcacacat
ccctttagaacTTTAGCGTTGTTTgcagaaaacaatgaaaatctatctga
tctcaggttaactAAATTTTACTCACAAGTACCTAAAAACTGTCACATAA
CTTGAAATTTAGTCTTTTCACCAAACTGGATCCGCTTATTAAATTATACT
AAGAGCATAAATTGCATCCaagaattattttaaagtttATGTCAAGTATA
TTTGGGTACACTCACTgagtagtctgaatcgcagacctctatagaaatac
ttctataagaaacttttttcgctagaggatgagcagaagcctactcATTG
AGGTATCAAGATCACATCGACAGGACTAGATATAATTTTACTTGCACACC
AGAGATGTAAAGCCATTTGCCTTTAGGCAAAGTTTTAacactacaatgac
ttctttgcgggcaataattacaaaaaaactccgatcaaagatggcggata
tagcttcgTCCAAGGTCGATAAAGGTTAGTAGGTATAATTTACAGATGAT
CTTTTTAATTCTCATAGGATAGCGAAAGAGTGGTTAAGAAGGATGGACAA
TCAGCTTTTGATGAAGAGCGCATGCATGGGCCGACAGAGAAAGAAGCAGT
GCTCGATCAAGGAGTTGTTATGAAGGATGGACAATCAGCTTTTGATGAAG
AGCAAATGCGTGGTCCACCAGAAAAAGAAGCAGTTCTTGATCAATTTATG
GTGAGCTTTCTTTAAGCTATTTGTTTAACTATAATAAATActgaaaaatg
tcaatatgtTTCTGGCTTAATTTTTTTAGGCAGCTGGCATCCACTAAAAG
ATTCGTACTCCTTATCGTACCTATAGTACTTGAACTACCTGCTATTTTGT
CCTATCCAGATACACTCGTTTTTATAactaaaggcttcaaaaatgccaaa
aaatgctaaaaaataagaactAATGAGCATGGAATTTCTGTTAGTAATTA
GTAATTTGTATAAAGCACCAAATACCTGTATTTTGCCCTCTACTTAAAAA
AATGAATCCTTTTacaatcaaaaatctttttcctcCACATAGGATAAAAG
AAAGATTACTAGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATC
AATTAGAGGTGAGATTAttttaagccccccccccccccctccccccaaaa
aaaaaaaaaaatccccaTTAATTAGAGGTTGGGTTTttttaagccccccc
cccccctcatctgcgaaaagaaataaatttttacaaaatcagCTTTTCGT
CCTTGAAAGCTCTTTTCCAAATTATAAatagtctgtacacagacccgata
tctacgtctaatttcaaaattcattgccgtagaggatCTGTTTattattg
tcttttctcatttgagatttttcaaaccgacagCTGCGATGGAGTGCGGG
TGAGAGAAGAGAGATAATAGGAGGGGTGTTTGAAATCTtctagacttaaa
actttccctCTACAGGGGCTTTCATTCTTtccaatattttgatttattgt
TTAGGATGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGAActcg
aaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaattgg
cCAAGACCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGA
TgaactcgaaaaaaaaaattggccaagACCAGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGGCCAGGCGATGAActcgaaaaaagaaatt
ggcCAAGACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGC
GATGaactagaaaaaagaaattggccAAGACCTGGTGATGAActcgaaaa
aagaaattggcCAAGGCCAGGCGATGAACTCGAAAGAAGAAATTGGCCAA
GACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAA
ctcgaaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaa
ttggcCAAGACCAAGCGATGAACTCGAAAAAATAAATTGGCCAAGACCTG
GCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAACTCGAA
AAAAGAAATCGGCCAAGACCTGGTGATGAACTAGAAAAAGGAAATCGGCC
AAGACCTGGTGATGAACTAGAAAAAGGAAATTGGCCAAGACCAGGCGATA
AACCCGAAAAAAATCATGATTATCTTGGATAGCATAATGATTTAGTGCAA
TGATCTACGCCATATATATACCCGGTCTCGAACTGGGTTCTGGgtcaact
tttttgaaaatttgtgtttttaacATTAATAATGTAACTTGTCCTTTGTT
GTTTGTCTTtttacaatgctggacaaaaggtttgtagacttctgcaatat
ttgcaaaatacttcaatatcgatcaaaaacaagttcccaagaggctctgg
gtgctttccaaacctatccaaagtctttcaaagtctttcaaagtcttttt
tacttgtttgttttgtctgttGTTTAACCTTTTTGTGGTCTTGACTTGGT
ACGAGtatgtttctttgtatttgtgtgcgAGTCTATGCATCTTTGttatg
tttgttagtttgtttggtccagggttatggaatctaggggaggctgagtg
ttggacgtccttaaaacatgtCTAAAGCCGCTGCACCTGTCGCAAGTTGG
GGACGCGTCGGGGACTCTAGATTACATTATATTTTTGTTGGgctttttgg
tagtttttagtGTTTATATTTTTGTGATTGTTGTGTTTATGTTTCTGCTt
agctttttaaactttatatctattgttttgttggttaactctttttttcg
cataaaattctcatttcttgacataatatttgattggtttgatttatata
tttagaaaaattcaaataaataatagaaaaaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00056563TCONS_00056563Clytia hemisphaericatranscript
TCONS_00056564TCONS_00056564Clytia hemisphaericatranscript
TCONS_00056565TCONS_00056565Clytia hemisphaericatranscript
TCONS_00056566TCONS_00056566Clytia hemisphaericatranscript
TCONS_00056567TCONS_00056567Clytia hemisphaericatranscript
TCONS_00056568TCONS_00056568Clytia hemisphaericatranscript
TCONS_00056569TCONS_00056569Clytia hemisphaericatranscript
TCONS_00056570TCONS_00056570Clytia hemisphaericatranscript
TCONS_00056571TCONS_00056571Clytia hemisphaericatranscript
TCONS_00056572TCONS_00056572Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00056564-proteinTCONS_00056564-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:192109..195991 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.67	0.71	1.78	2.51	7.54	5.79	7.55	9.2	20	8.71	22.28	40.63	17.28	21.1	28.7	21.73	6.46	10	11.93	12.94	2.9	2.08	1.14	1.58	6.55	6.32	7.01	7	1.76	1.68