XLOC_035955 (gene) - C. hemisphaerica

Overview
NameXLOC_035955
Unique NameXLOC_035955
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_285:423530..433109+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035955 ID=XLOC_035955|Name=XLOC_035955|organism=Clytia hemisphaerica|type=gene|length=9580bp|location=Sequence derived from alignment at scaffold_285:423530..433109+ (Clytia hemisphaerica)
ttttttaaattctcattcttttcccactctttccatcttcttctttgaac
tgtaaaatgtgtgtgagagccacagggttggatagtggcgATCCAATCCG
AGTTCCTTCCCATCTAGTATGCTTTCTAcaacgttgtggcagaaacgtgt
caaaggaatggcaactttgtctagtagaaagtacacttcttttttcattg
ttattttagtttcttcggcgGGTTCCGTGGagtttaagttttagtttatt
ttatatttgagcgcgtttcatactttcactaaacacatcttttaacatct
ttttatctgtggtggtgtctagctaacactgcttggcctacctacacaac
cctatttccattatataggaggatattttcacaaatggccgaaatcctgt
gtaggtcagTCGAGCACACTGTCATAttttaaacgacaaaaaaatgagta
atcacatcatttagcgccacgctaaacaaaagaaaaaaaagaaagatcaa
aggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATATtttaaatgacaaaaaaatgagtaatcacatcatttagcgccac
gctaaacaaaagaaaaaaaagaaagatcaaatgcttaaaacaaaaagtac
ttaAAACGTTCAATAACACGTCAtggtgaaaacaaaaatacgaTATTCGT
TTAGCGGCTCTTATAAGGAACACATTGATATATATTTCTGCTACCCCACA
ACTTGCaatcgaaaaattgagcaaaatattgaaaatagttttttcaaact
tcctTATAAAAATCTCATGTTTGGCACTCCTACACGGTAGAAAAAGTGAA
GAGATGAGAAATATGACGTAAACACAATGTAAGTAGTAATTATATTCCCA
AGTGATTACGAGAACTCATTCTTTAAACAATGGTAAGTATTTTATTACGT
TTAACAAAGGAAAACACGAAGTCCATTTCTTTCGTGGATATGCATAAAAA
TTATGTAAGTACATCATGaagaaatttttacattttactgTGTGAGAGTT
GTATGAGTGGCTGCTTCCATGATGAcgggaaatttgttgaaagttaAGTT
GACAAGAGCAAAAGTCTACAAAGGTAttcttttgttgaatttttgcaTTC
TAACTGATTTGTAATGGTTACATTGTTTTACTTCTAATAACAAAGCGAAA
TATTTAATCTTTATCTAGCTTGCCTCGTCAGTTTGAAGGAAATAATTTGA
TAGACCATTTGACCATAACCAGGGGGTACTAAAATAATTCATCTTGTATA
TCCGATATATCCGTGACCCAACGGGTTTTGTTTGTACTTACTGGAAACAG
AAGAGGAGTGCAGTTTAGGATTTCTGAGCTTTATTCTCACTGGCGTTTTT
TTTCCAGATGTGCCCTAAAAGGGGGCTCCAACGTGGCTATGAGATAGGGG
CGTCACAAAAGGCATTTAAATTTCTTGTGTACCGCAAGCTAAAAGGAGGG
CGTTAAGAATCAGTGTCATTATAAATTTATTGATATCGGCTAGAAGTTTa
ctttacacccctgtctcagtttTGAAAACCACCAGGGTCACTCTGAAAAT
AGTTGCATTTCACGGGGTCTGATTTTCGAGGTCCTAAGGTTTCACTTGGG
TAAGAATTTTCACTGTTGAAATGAACAACAAGTTTATCAAAATTCCCGAT
TGTAGATAGGGTTTTGCTGTTTACAGTACTTTAGTTGCCAGTTTGAGCCt
cgaaattgttcttatcctgtctTGGAACAACGAATTTAACAGTTTTTGTG
GACTTGGGGTCTCGGAGGTTATTGTTGATGCCTTAAGCATGATCTTTTTG
ACATGAGATGTAATTTTATAATTTGCATCTAATTTCAGGAAAAAGACGTT
TGGTGCAAAAGAGGTGGCGATCAAAGAAAGAACCAGACTCCAAACTGTTT
GAGCAGCGTCTCAAGGTTGCTGTCGGAAAGGTAGGTTTCTATTTTAATAT
ATTGATTAAGAAAAACAGTGAAATATCTGCTACAAAATTATTGCTCAACA
TCCATATCGACAACATCGTCGACAACAGGAAATCCGTTCAGGTTCTTCAG
AAAGtttttgtacattttctttttcttgccaCATACATTTTCATGGAATT
TCTCATATAAATCCTGGTCGTTACGTTCTTCCAAGATTTCCACAATTTTG
GCTTCAATTTGACTAAAATATCAATATTGGTTCTTGTTTATAGTGCACAG
GTTTTTGCAGTTGTTGTAGATATCTAGTGTAGATAGTCACTCATTAGATA
CTGATTTTACAACACACATGTCCTAGGTTTAgttttgtattgttgtaaag
gctggAATAAGTTTACAACTTAGCGTACTGTTGCTTTGCCTGTACACCcg
gtatctacggctaatttcaaaattcaaaacgaaACGAAAATCGTGAGATA
CAGAGTAAACGTTGCTAGGTATTCTTTTTAATTAAGACTTTATTTAATAT
TGAGTCGACACTTAGACCACTTATGATGCAaagcaaaattgaaatttacc
tCTTTTTAAGCGAGTCAATTTCTTGACCTTTCTTCAGGTCATCTTCGGTA
ACGAATATGTACCTATAGGCGAAAAAAAACTCATCAGATCTGGAAGGGAG
GGAAAATTGCTAGGTGCGGTCTTGATTATAGAAAACATATAAGTCAatta
tgatattttttcaatttttcagtaGTTAGGCATACCTACCTCATAGATTT
TTGTTCCCCTGTTCGTAGAAAACTGAGTGATTCAGCTTTTGCCTGCTTAG
CATACACTTCTAAACTCATCAATTCTTCTGTTAAGGCGGTGCTGTTATCT
AACGACGATAATGTGCCAGTGCGATCTGTtaataaaagtaataatttAAA
ATCTCATTGAATCATCAGAATGCCGGATTACATCTTGCTCAATAAACGAT
TTAATGCTTTAAGCCTTTGCCTTTGCCTTTCACGTGGCTAGTCTCCAAGG
AAGAATAAATCTCAGACTCACCCAAAAAATTGAACTCCCTGATCAAGCAT
CTAATGAGGAGAACAAGGTCTTCAGAGGTACGCTTGCTGGTGTTTAGGGT
CTGTTCGTACATTTTGTCCTCTTCTGTACATCCACTGAATGACAGGAGAT
TCTCTCTAAGCTGGAAGAGAAGTAAATTATGTAAGTCCATCTTGCATTTT
ATAGACCACTGGCTTGCATAGAGGTTTCAACATTTTCTACCGGTACCAAG
TGTGGAGCAAAAATGGAAACACACGAACAGATCTGAAAAAACTGTCGGTA
AGGAAATTTAATTGTTTCGTTCTGTCCAGGCTAAGCTGACAGTTGTATGT
CTGCTAAAAGGTTCCACAATCCCATGTTCATGACGCCTATCATGTAACGT
TGACACAACcgtgcctcacagccccggtggaacttttttacACAGTGGGA
TAAGAATTGTATTGTTCCCAATTTTTACCATAGAACTTCGAGGGGATAAA
ATCCAAGTCAATTTCCCTATGGGTTTCAAATTGTAAGGTGTTGAAACGGG
GACAAAATTTCGGTGTGTTTTAGGTGAACGTTGAATGGGCGTGATTGTCA
GATGTTGTGTTTCGGAAAAATCCATCTGTTTATAGTCACATTTATAGTTT
TAAAATCTTTGTTCTTGTGTCACTTTAAGGGAAACGACAAAGGTACTCAA
ACCAACAGCATCGAGGACGAAATAAGGGAAAGGCGTGGTACTATACGggt
aaatatttatttatatctCCTACATCATCGTATTTCATACTTGCGAAGCA
AGGTCATAGGTCTACAAAATGGAGATTAAGCAATCACCATGCACGGAGAA
ATTCACTCACTCTGCACACTGTAATAAGCTATTACCTTCAAAGAAGAGAT
TTTGGCgcaaatttaatttggcggctagcggaaaaaataaattttggcgg
aaacttaatttggcggatgtcgccaattttttttccaccTAAATTTCTTC
CTTTCAGGTAGTTATTTGTTATgattaaaaatttgatttaaaagggAAAT
CACCAATTTAAGCCTGCTGTATTCATAAGTATTCTttatgtttcgaaaaa
aaaaacacaggtAAAATTGGCCACGGTGAGCGCAATTGTCCTGGAGAAGA
AATACTGTCATCCCTATTAGTAAGTTAGATGGGGATAAACTATGTCACAT
CTCTTCTTACAGATCGAACCTGTGACAAACCCAGCCGTATCGCCACCCAA
GTTGAGACGCACCGTCAATACCGATGTACCCATCGAGGGACTGCCAACGA
AAAACAAGGCGAAGAAGAGGAAAGCTGTCAATACGAAAGACGTTGTTGGT
AACCATTGCAGAGGCGGATCTGGGAtttttctgagggggttcaaaaatct
cttttcaaaaaattttttgcggaACAAACGTTTTGGGCGTAAATTTTGCA
CCCGCCCTGCTTGGGCGGTGTCAcgttttttccattcaacatgggggacg
ttaatgagcgcctgcgggggaccattcaaaaagtacgttcgtaaagtacg
ctcgaaaatggcaaatttttgactccccCTCCCCCCGTGTACGCTTTGTG
TACGGGCGTACGTACGCTTTTCAGTACACCCCCTTAATCAAAGTCGAAAC
TTGtaactcttgtaacagtagaatatgtaggtatccaatcgtatttataa
caaagtctcaagaaattaaaagaatctataagatgaacaaaaataccaaa
ggagaaatgaaaaataacaatcgcaaaaaccattttttgatgggaaaata
ttgcgtttttctctcaaaaaagacagtttaggaaaaattacgagcgtacg
tacttctcctcaaggacccccctccccctcgtacgTTTTTGGGAGTACCC
CCCCTCTCGaacgtacgtactttttgaatggtcccatgCGTTGAACGGAG
GGCGGTAGGCCAATTTTTTGACCCGGCTTGAACAGCCAGATGCTGAACGT
GTAATAatcgtttgtggtgatattcatatatacattgggaaattccctca
ctgcaattgcgcacatctagtttcttcttttcaatcttatcacacaaaac
gttcataaaacgcAAATATAGGtagtattatatttcttatattttctgta
tttttttggtttaaccttttattttgataaaacagacaccCAGAGCATGC
TCAGAACTGCTTGTTTGGTGTATATTCGTTTATATATTCATTGTTCTtgc
agaaaatctttttgagaaagccatagataaaagtgcaaataaatggtttt
gaagaaaagtttgaaggaaaaataagacaatttataatattaaatatttt
aacacacttcagtttcatttcgtgaatatttaaaacatagtaaaaaagtt
cgataatttattcttataaccattttttatggaatttctttATAGTgaat
taattggctgacaatcaagcaaaaacctttcatgttgagtatgtttacat
tataaaaccagaaatggataatattctgaaaacagtgatcaagttaaaaa
ataaaggagattatttatataatacataCAAGGAAATACAATATTCTTga
gatggaaaaataaaagattgccaaaaagtggagtacaccatgagtactga
tataatgtattttatgtgcaaatagactcaagaaattctagctctcaaat
tagatgaataatcgtcagccgtgcaaaattaatcgaatctgattggttta
gaggagtgcgattaatcgttaattgcactattaccactttttgcactctt
cggcggggggacacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ngttacaatagcttcttttaattgaaaacaaagaaaaattacactgcaat
gttttctttttaaacaaaagaaaaaaggaggttttcgaatgtttacaaaa
atataacagttagaaaaagattctttttcaaaactatgatttactaatga
ttatttactgacgattacctcggaatcgtatgttttgtcgtgcaattaac
gattaatcactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNatcactcgtaacaaaggagaaaataccgtaatttgcactcgtc
cttcggactcgtgcaaattactattttctcctttgttactcgtgattaaa
cgttaattgcactccaaaccatacgattactagtactaatctcataaaaa
agtactttttacattaaaagtaaaaagtttgatgtttttaagcattatta
aaggaactaacagtaatcatcaacaatctgtaggaaagcactttttcaac
tttcacaattgtatggagtgttgtttataattcttttggtagagattgtt
gttatatatCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGTactctcagagaaaattcataaaatggggggtcattatta
actgattttggggtgattttcccaaaaaactcaaggaaaatgaaggtttg
gcactttatcagaaaaatttgataaatttgaggtcattacaaaatgctaa
ttgggtgatgttttccaaaaaattgcaaaatgtccaCCTATAATTAAGCA
CaagagggtaattttttcagaggtcaccaatgtctctttttgtaCCGTAA
GTtcgtctaatttcgacatccgtcttctaatttcgacatccttctttata
gataggaataataagaaggtcgaaatcactgatagactaaagatttttcc
tctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGACCACTGGCTTGCATAGAGGTTTCAACATTTTCTACCGGTACCAAGT
GTGGAGCAAAAATGGAAACACACGAACAGATCTGAAAAAACTGCCGGTAA
GGAAATTTAATTGTTTCGTTCTGTCCAGGCTAAGCTGACAGTTGTATGTC
TGCTAAAAGGTTCCACAATCCCATGCTCGTGACGCCTATCATGTAACGTT
GACACAACcgtgcctcacagccccggtggaacttttttacGCAGTGGGAT
AAGAATTGTATTGTTCCCAATTTTTACCATAGAACTTCGAGGGGATAAAA
TCCAAGTCAATTTCCCTAGGGGTTTCAAATTGTAAGGTGTTGAAACGGGG
ACAAAATTTCGGTGTGTTTTGGGTGAACGTTGAATGGGCGTGATTGTCAG
ATGTTGTGTTTCGGAAAAATCCATCTGTTTATAGTTTTAAAATCTTTGTT
CTTGTGTCACTTTAAGGGAAACGACAAAGGTACTCAAACCAACAGCATCG
AGGACGAAATAAGGGAAAGGCGTGGTACTATACGggtaaatatttattta
tatctCCTACATCATCGTATTTCATACTTGCGAAGCAAGGTCATAGATCT
ACAAAATGGAGATTAAGCAATCACCATGCACGGAGAAATTCACTCACTCT
GCACACTGTAATAAGCTGTTACCTTAAAAGAAGAGATTTTGGCgcgaatt
taatttggcggctagcggaaaaaataaattttggcggaaacttaatttgg
cggatgtcgccaaattttttttccaccaaaatttcttcctttcagGTAGT
TATTTGTTATgattaaaaatttgatttaaaagggAAATCACCAATTTAAG
CCTGCTGTATTCATAAGTATTCTttatgtttcgaaaaaaaaaacacaggt
AAAATTGGCCACGGTGAGCGCAATTGTCCTAGAGAGGAAATACTGTCATC
CCTATTAGTAAGTTAGATGGGGATAAACTATGTCACATCTCTTCTTACAG
ATCGAACCTGTGACAAACCCAGCCGTATCGCCACCCAAGTTGAGACGCAC
CGTCAATACCGATGTACCCATCGAGGGACTGCCAACGAAAAACAAGGCGA
AGAAGAGGAAAGCTGTCAATACGAAAGACGTTGTTGGTAACCATTGTCAC
GTATGTCATGTAACTTTCTATTCGAAAGAGGACAAGCAATCTGGCATCAA
AGGCAAAGGGTCTAGGGTACAGAACTCCAGCATAGGGTGTATTGTGGACG
GGTGTGATCACTGGGTTCACGTACGTTGTTCTTCACTTAAGGATGTCATT
GTAACAAAAGAAGACGCAAGAGTTGCAGATTTCTTGTGCCCAAAACACAA
GAAAGACCGTGAGCTAGCTGCCTCGAAACTAAGAGTCCACAGCCAAGTGG
ATCAAAAACATAGATTGTGGCTACCTTAAAGAGAGAAATTTAGGCAGGAA
CTTAATTCGACGTGTGGCCGAAAACTATTTTAATTAGCTGTTCAGTGATT
TTTTTGGCGGGAATCGTTGTCGAGTAGCAAATTACCTGTTTGAAATGAAT
GACTTGGGGGAAAATTTATGATAAGATTAGATTTTGCTAATTCCTCTGAA
ATCATTTCACTAAAGTTTCTTTCCTTAGGGCAGCTCAGCGCTGTTGATCG
ATATAGACATAGGCAAATAATGGTTCCAAAATGTTGCCCATTACATTTTT
ATCCTATACTCGGTGTTTTGTATGTAAGAGCTGTAAAATCTTAGCCGTCG
GTCACCATTTTATACTTCCACTCGCTCTTCGTGTTTTTAAGTTAAACCCT
ATCCATCTTAAACAACTAGGCCGTGAGTTTTCTTATGTAGCTTTGCTGGT
TTTGGGAATAGTGAATACCTTTTCGATATTATGGAAAAGTCTTATCGTCT
TTTGCCAGCTTTCATTAGTTGGAACTCCAAGTTTCGGAATCCAAAATTTG
ATCTTCTTGTTCATCTCTTCCATGATAGCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00057072TCONS_00057072Clytia hemisphaericatranscript
TCONS_00057073TCONS_00057073Clytia hemisphaericatranscript
TCONS_00057074TCONS_00057074Clytia hemisphaericatranscript
TCONS_00057075TCONS_00057075Clytia hemisphaericatranscript
TCONS_00057076TCONS_00057076Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00057073-proteinTCONS_00057073-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:423530..433109 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.87	1.42	0.68	0.52	2.44	2.04	3.47	4.15	4.01	4.96	6.75	6.75	8.49	8.6	6.49	6.78	9.07	8.4	6.44	5.58	8.3	7.27	3.58	4.55	7.08	6.42	6.23	5.18	2.42	2.14