XLOC_038130 (gene) - C. hemisphaerica

Overview
NameXLOC_038130
Unique NameXLOC_038130
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_348:969..4779+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038130 ID=XLOC_038130|Name=XLOC_038130|organism=Clytia hemisphaerica|type=gene|length=3811bp|location=Sequence derived from alignment at scaffold_348:969..4779+ (Clytia hemisphaerica)
gaCTAGACTAGCAACTACGGGTTATTACCTCGATTGCGGTGGCACACTTA
TCTCTGATCGCTGGGTGTTGAGTGCTGCACATTGTTTCACTGCTGCGGAT
AAAGACTCACTTACCGCTACTTTAGGTATAGTAAAAAGCcctatcggcca
aaacttagtcggccttaattattagttggccttaattattagtcggcctt
aattattagtcggccctaattttagtcacctNAGCCCTATCGggcaaaac
ttagtcggccttaattttagtcggccttaattattagtcggccctaattt
tagtcacctcgtcaaaatttagtcactaagggctgactaataattaagtt
ttgtcattttaaaatttttagtcggaccaaattttagtcggaccaaattt
tagtcggccctaattttagtcactttAGGGCCGACTAACTATATTTGCCG
ATAAGATAAGGTAGAATAAATTTATCGTTGGCCTTGTTGTAGATATTGTA
CGTGTAAAGCCTAGTAATGTAGCACTTTTTTCATCATTCAGATGATAGTT
GACGGACTATACTATCTaaactagacgtcacccgcttttttctaaacaat
tatctcccgaatagacggggggtccgaataaaaGGGGGGTGGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGGGGGGGGGGTAATTCGacgacagaattttttttaactga
tataaatttcaacaacaaaaaaagaaactttaacaaatgaacacgtaaaa
taagaaccaatactaacaaaaaggaaaatttaagtatctacactgtaata
aaatattaaattattcgaatttgattagcaatctttataaatttggtatc
attggaaagatattagttagtggaacaatttgcaataaaaaaatctttaa
aaaaattctaaaaatgaagatgaaaatgaagaagaaaaaaatgaagatct
tgtagaaaagtgctacaactatcattttcattaaagtgAATCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttctcaaa
aataatcattcagtcaaaagatatcaaacaaagttataagctaattgacg
tctaaaaacgctgttttctgctgttttctgctgttttttgggggtcaatc
acttatcaactttgtatcataactttatattgaataaatattttagcaaa
atttttttacagtgatgacctcaaagaatctctccagtgaaaatgaaagt
tatagcacttttctacgagatcttcatttttttcttcttcattttcatct
tcgtttttggaatttttttatagaacttttcattttaatttgttCTACTC
GCAAacatctctccaacgataccaaatttataaagattgaagaatttctt
caaaagttataggttaATGAAAGTGCACACTTaccgtgaacagactttag
ttagTTAAGTTATTCGTATTGACTTTATTGTTTGATTTCTAGGTGACCTT
ACAATTACTCAGGATGAAGAAGGGGAGCAGATAAGAAACATTAAACAGAT
CATTCCACACCCGCAATACAATGATAACACCCTTGACAACGACTATTTGT
TGATCGAACTTGACAGCCCTGTAACAATCACCGATTACGTGCGGCCCGCT
TGCTTACCATTTGGTCTTTCAAAAAATGCGTTCGATAACGCAAAAAGGAC
TTGTTATATTACTGGCTGGGGAACAACATCTTCTGGTGCAGATTATATTC
CTGATGTAAGTTTTtctccttgtttttttttgaaatacacgcttttttaa
taagaatatccaaacttttcaaagtttttggatgttctcaactttttgag
ctttcaatccaaaaaaggtgatctaaagtttttattttcaccattttgtg
agtattttttatggaattttccTACAAAAtgtgtgttttagagtccgtcc
acaaagcctcaaaatgttcttaatctttgctatcgaagccttacgtTATA
AATCATATAAAGTATGATCTCGTCATTCAAAGATTtctgttcttgtatag
tttgcgGTTGTTATAAAAAGACGTGTAGTGCACTGCCATAATTGCTCTAA
TTTAGTGTGTCCTTTAATTGCGGATAAATTATATTGGCAATTTCGGACCA
ATTTAAATCCTCTAATTATTAGTGCGGGTAGTGTTTCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAC
CATTAAtgataacacccccttctcatagagccactgggaacccttcccac
tgaaagAATTGGCTGAAATATAGTCCCGGTGGAAATTTATAATTCAATTT
TTGTCCacactaaaaataatcaaataaaccaatcctcacctCAAAAAATT
TAGCTACTTTTTCCATTCCCACTAaacattttctgaaaacaaaagaattc
aaataattttcaaattaaacaaTCCCCtcctatattgttggaaaattgca
aatcaaGCTAGCAATATATTTGTgtacaccttttcaatatattgccggta
TTCGGCAATATACGGTATTATCAATATATATTGCGTacagtgtatgtagc
cctttagtCAAATAATATCAATTCGCCTTATACCTCAGAGTAAGTTATAT
TTTAGCATCCTTTCTTTACCAGGTGGTCCATTAGCATGCAAGGATGCATC
CACTAACACATGGTATGCCTGGGGAATCACATCTTGGGGAGACGGTTGTG
CTATAAGAGGAAAACCTGGAGTCTACGCATCTGTCGTTGAGATGTTAGAT
TGGATTGGAACCAACACAGGAATAACAGCATCAAAATAAATATAGAGTCC
ATAATAGTTCCACTCATAAATAACCTAAATGAAACACGGTGTACGGTACG
GTGTACGGTGGCCTCTATCTGCCatgtgttttattttgtttttatggcAG
TAAAGATGTACGATTTTATACTTGTTGCCTTGTTTTccgaaaatgcactt
tttttattcatatatttttggagacttttcaatttttttttaaaaacatc
aaatttataCTTaacaaattttgcaattttgtaagtttaacattttttga
tttAGCGAATCCGTAAGTCTAATATTTCATAGCTTGCAAATCCGTAACTC
TAATATTTCAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00060619TCONS_00060619Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00060619-proteinTCONS_00060619-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:969..4779 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.12	0.63	0.65	0	0.15	0	0.24	0	0	11.83	15.03	0	0	1.48	1.68	27.06	18	0	0	0	0.06	0	0	0	0	0	0