XLOC_038132 (gene) - C. hemisphaerica

Overview
NameXLOC_038132
Unique NameXLOC_038132
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_348:29416..34005+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038132 ID=XLOC_038132|Name=XLOC_038132|organism=Clytia hemisphaerica|type=gene|length=4590bp|location=Sequence derived from alignment at scaffold_348:29416..34005+ (Clytia hemisphaerica)
GTGAAAAAGAAGTATTCTCTCTTGAAAGGTAAGTGATTTGGACATTATTT CAATCTAATATTGATTTCATTAtttaaaagtgaattttctaATTCCTTAA AATCTCTTTCAGAGACAGGTTTATAAGTCCAGCAATCCCTTATGAAGTTT CCATaaatctagaaaatttgatttttccagTTGAGGAGAAGAATCTCTTC ACTGTATACTGCTTATCTTCTGgctctgaaaattcaaaaagaaaaggatt taacattttctcaacttttttatTCAGCAATCATGAGAAGTTTGGCGATT CTTTTGGCCGTTACCATCATTGGTCAATCTTACGCAGGTATTGTTTATTG TTGTTATtcaatcttattcaatttttatctcaattaaagggacataaaag tagcaaaatgtaaacattgcacgaaccacgtgtcattaaagagaacaatt aaaaccacgtgtccaaaacaaacttgtaaaacaattgaataaTCAAAATT AGCCNTGTGGGTTCCATTTGGATCATCCACTGTAAGTTTGGCATGGTAGA TTATTGTATTTAGCGTGACAACCACAAACCACAAGGAAGTTGCATTTGAA ATATGACAAATAAGATTAACGAGCAAACCAAACAGCCCCATCAATATCAG ACATTATTGCATTTTGATGTCTTCCTATGGAGCATAAGGAAATACTTTGT TCGCCCAAAAAAGGGTCtaggaactagtggcaaaactTGAGTATAAATAT GAGCGGCGGAGAGTTTGAAAATCATTCCCATCTCTAGCATCTTGTGGAGA AAAGGAATAAATAGAGCATAAGTGAAAAAGAAGTATTCTCTCTTGAAAGG TAAGTGATTTGGACATTATTTCAATCTAATATTGATTTCATTATTTAAAG TGAATTTCATAATTGTCAAGTCAAATTCTCTTTCAGAAACAGGTTTTTTA TAAGTCCAGCAATCCCTTATGAAGTTTCCATAACtctagaaaatttgatt tttccagTTGAGGAGAAGAATCTCTTCACTGTATACTGCTTATCTTCTGg ctctgaaaattcaaaaagaaaaggatttagcattttctcaacttttttat TCAGCAATCATGAGAAGTTTGGCGATTCTTTTGGCCGTTACCATCATTGG TCAATCTTACGCAGGTATTGTTTATTGTTGTTATtcaatcttattcaatt tttatctcaattaaagggacataaaagtagcaaaatgtaaacattgcacg aaccacgtgtcattaaagagaacaattaaaaccacgggtccaaaacaaac ttgtaaaacaattgaataatcaaaattagccatatttgctttgatttttt tattttgacatttgttttgattttgtatccgcagcatacagtttgtttac aaatttcgcacgtactgttatgtccctttaaatattGCGAAAAATCCTCT CGCTGTTCTTGAGACCTTCTAGGTCCCATTGATATTTTTGGGGGGGTTTA GGGAGGTAATTcaaggaaatttttcaaaattattaaaacatCTGTAATTT TCAATTGTCAAGACATTTGTTATCACTAAGGAAAATTTAATGTGTTAAAC ATTGTAAAACCTGGGAGAGCGGGGTCAAATCAGTGAATAACATTTCTTCC AACAACCAAGGGATCTTAAGATGTTATAGCTTCCATAGAAACAACTTTGT AAgatttttaacttaaaaaaatcgTGTATTCTAACGTAACTCCACAATAA GATAACTCGAAAAATTAGCTATTTCATtacattttctttaatttcagGTT ATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACTGACCGATGT GAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGAGGGATTCTC TGGTCGCAGATGTGAAACAAGTAAGTCATCTTTCTTTATGGATGAGCTGT GAAGTGTTTGAATTCTATGATACACATGAGATAAAAAGATTATTATAGTT TATGTATCAGATGTCAAACAATTACGTCATTCCTTATTTacacaaaaatt gtttttagctCTGGTTTCTAATTGTTATTGTGAATTATGAAGTGGGCAGA AAGTTTGCTAACTTTGTGTGCACTCTAATAATAAGAATAAATAGGTCAGA ATGTCACCATGCATGCCAGTGTGATGAATATAAGAAGggatttctatgtt tttttcaaagaaatttaaaaccTTACGGCGAGTCTTTCAAAGGGGTCATC AGAcagtttgatattttttctggCCTGTAAAATCATTCCCACAATCCTGA ACGAAAGCTCTGAATCCCGGGGGAGGATACTTAGACAAATGGAGGGTAGG GTATTTGGCACCCTTCACAATACCATaattggatttccaaagtcccggta agggtaggaaaaaacagaaaatcaaattgcagtcccactaagggtagaag aaataggaaaaattcaactttttacccccagaaagatagaaatttagtCA AAATTAGTCCCGGTAAGcctcgtaaaattcacaaaattttcgtTTGTCGA GGGTTGGGCATCATCCCCCCGTCAgttcgcaaccctagtacccccccccc NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNAGTCAATGTGTTAGACATGATGTTTTGC CTTATTGCCAATGTTTTTAAATGATTTAATACTttgggtttttttttctg aaatagaTGACGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACC TGCGAAGACGGAATTGCTTCTTTCACTTGCAAATGCAAGAACGGATTCAA TGgaaaattctgtaaaaacaacATCGATGATTGCCGAGGTGTCAAATGCT TAAACGGAGGAACCTGCGAAGACGGAATCGATTCTTTCACTTGCAAATGT AAGAATGGATTCAATGgaaaattctgtaaaaacaacATCGATGATTGCAA AGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTT TCACTTGTCAATGCAAACGTGGATTCAATGgaaaattctgtaaaaacaac ATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGA CGGAATCGCTTCTTTCACTTGTCAATGCAAACGTGGATTCAATGggaaat tctgtaaaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGA GGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGG ATTCAATGgaaaattctgtaaaaacaacATCGATGATTGCAAGCGCGTCA GATGTCTTAATGGAGGAACCTGCAAAGATGGGATTGCTTCTTTCACTTGT CAATGCAAGCCTGGATTCTCCGGAAAATTCTgtcaaggtttgtttttttt catttttttaccaatattttttgACTGCAAGTCATCTTTAAATAATGAGT TACAAGTTTTGCTATCAACCATTGAATTTGCTTTTAATATTTTATGTACC AAGAGACCCGGATATTGTTTTATTTCCTATGCCACTATACAAATTCTTGT TGAAAGTTGTATTTCCCGAAATCAGTTCTCTTAAGTGATTTATTGCAATT TGCTTTTCTTCGACAGTTCCATCATGTCACCCTAACCCATGTCAGAatgg tggaaaatgtttgaaacatGGAAACGCCATCAAATGTTGGTGTAAACAAG GCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAAGGTAacatttaaaat attaaaagatcATTTTCCTTTCGATGATTAAAGTTGCAATTAAAAtacaa caattttatttttgaaaatttatcttaaaaaatcttatttgagaaaatgt cgaaattttttggaattttttttctttgctctTACAAAATCATTCGATAT CAACTATTTAGAGGCTGTATTAAAAATTACTTTACGAAGTACTGATATAC ATAATAAAGTTAACAAATCTTTCATTTGCCAGAATGCAATTACCACTGCA GCAGACAGCGTGGATGGTGCCGTATTATGGGAACCGACGGCCGTATTTAT GACAACTATTGTCAATTCGAGCGTGCTCAATGCAAAAATAAATCACTTCA AATCAAGAAGAAACTCTGTGGTTACTGgtaaattttgtgaatattttagA CTAGTTCAATTCACAATGAAATTTCAATAATTCGTTAGAATTTGAagctt ttcagactttttttcaCTCTTTACGGAAAAAATTGTTCCTGGACCTAATA GAATAAGATAAATCATTCCTTTTTTCTCTTTGGATCTTTTTAGTTTGTTG TCCTTTTTTTGTTACTCGTtttataacttttacaaaatacTTTTGATGGA CAAGAGAAGTTGTTACTTGTGacaaattcttaattttttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00060622TCONS_00060622Clytia hemisphaericatranscript
TCONS_00060623TCONS_00060623Clytia hemisphaericatranscript
TCONS_00060624TCONS_00060624Clytia hemisphaericatranscript
TCONS_00060625TCONS_00060625Clytia hemisphaericatranscript
TCONS_00060626TCONS_00060626Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00060626-proteinTCONS_00060626-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:29416..34005 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
NOTCH2NLnotch homolog 2 N-terminal-like protein Homo Sapiens
LOC101929796PREDICTED: notch homolog 2 N-terminal-like protein Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.03 0 0.08 0 0 0 0.38 0.98 0.56 0.83 0 0.49 2.22 4.93 1282.73 315.27 1.25 1.92 0.33 0.33 1 0.88 0.22 0.44 0.42 0.67 0 0.11 0.09 0