XLOC_038339 (gene) - C. hemisphaerica

Overview
NameXLOC_038339
Unique NameXLOC_038339
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_354:955020..964906+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038339 ID=XLOC_038339|Name=XLOC_038339|organism=Clytia hemisphaerica|type=gene|length=9887bp|location=Sequence derived from alignment at scaffold_354:955020..964906+ (Clytia hemisphaerica)
tttttaaagtttcagacGGGGGATACGGTGCAGATTTAGCTCTGATCTTC
CAGCTGAACAATCTTCGTTCATAACTTAACTTATTGCTACTATTTATGTT
GCTTTTACAGACTTTTTATGATAATGAGAATAAGTGATAAGTAAATCTAT
AATTCAGCAATTTAAAAACATGGGAGATTTAGCAAAGAAATACAACCTGA
AAAGTCCAGGTaaggtttttcttttattaattcTGATATCACTCTGCTGT
AGTGTTACTTAGTCAGTGATTAGAATCTAGTTAATTAACAATTCTCATCA
AATCTCATATGTCTAATAAAAACACCATTAGATTTTTCTTCCATGGACTT
TATTAGGACCCCTCGTTTATTAAATTTAAGATTTATCATCACAATAAAAG
TCTCTTAATTTTCACTAGAAAGCTTGATCTATATTTGCCTTGTTTAAgag
ttttcagaagtacaatatCCAACCCCCTGGCAACTAGATCAACACATCAA
CCCGTTTTATTATCTGAAAATCTTTATTCCAAACCCGCATTATAAATTAG
AAACATGCTCAAGTATTATAAAGACCAATTTTTCCATCGTGTTACTAGTG
TTAACTCGACCTTATTTAATTATGTTTAGCTGTGAAGCGGTTAATGAGAG
AAGCTGCTGAACTTAGTGAACCTACTGACCAATACTTTGCTCAACCTCTG
GATGTAAGTTAGATTTTATTGGCCTAGTTTTCAAATATATTGAGTCTTTc
tgaaaaaatccgttcatagTGGTGGAGTACATATTATTTTTCCAAtgata
tttcaagatttttcaaatatttggactgacaaaaaatgtaaatataagAA
GCTTTTGATTAAAACACCAATAAACTTATTATGAATCTAACCTCTAGATT
CAGTTATtataaatttgaacaaattttagctaaaggttttttaaacaaaa
taatattttcaaggtatgccaatattttttgtttcgagcaaatttaaaat
ttcagacCTTTGTTTTCACAGGATAATCTTTTTGAATGGCATTTCACTGT
TAGAGGACCGCCCGATACAGAATTTGATGATGGGCGGTATCATGGTAGAA
TTACATTACCGCCCGAGTATCCAATGAAACCACCGAGCATCATCTTACTA
ACTGTAAGCATATAGTCCGGTCTCAAAGCCTTTATCTTTGTATAGTTTTG
CGTTTAGTTTTGACCATGTGATTAACTAATGAACAGAATATAATTGATTT
CCAAGGGAATGATATGCAAAATGATTTTCCACACTATTCCTTTATCATTG
CGGTTATTTTGTTGTAGCCAAATGGGAGATTTGAGATTGGAAAGAAAATC
TGTCTGAGTATGTCAGCGCATCATCCTGAAACATGGCAGCCATCTTGGAG
TAGTAAGTTTTTTCATTAACTTGCATGGTTATTTTGGTTATTAAGTCTTT
TCAAATTAACTGTCAatgaaattacaaaaataaataacttCTAGGATAGC
ATTCGAATAAGATTttatgcttgttgaaaagataatctcGATAGTGATTT
TGGGCCATTCTATTAAATTTCCGTACACGGGGgtagacgaaccttttcaa
gtcaaaaaacatttcttggaaatgtatggataccaactagaaaatgtcaa
aatttgcaaagaaacccttggagaatttcttttcataccttgaAGTGATG
GTAAACAAaccaaaatcagtcttttaccccctggaaattttaaaataatt
ttttatcccctggaaaaatgaaaataacacccttttagaccccctggaaa
ttctgctTCAatcccctggaaatgttcgtccatgCCCCTGTATGGGTATA
AGATGGAATGGCTCATTACGATGTAAAAGATCATTTTCCCTTTGAAATTA
ATATTCCACTTCTTAATTACAGTTCGTACAGTATTACTCGCTTTGATTGG
TTTCATGCCAACACCCGGCGGTGGAGCCATCGGCGCTCTAGATCATACGC
CAGAGGAACGGAAAGTCATGGCTAAAAGGTATGatgattcttaatttttt
atattttgtctttttatacATTATTGCaggtttttccttcaaaattgaaa
ataatttcatagGCGGTTTTAAACCATGTCAAACTTATCAGttgaagaga
tttgtaattgtaatttcattgtcttttaacgagcgttgcgcCCCTTCgta
tgtttccgacgtacttgctctattgtcttaaatccgccagcGAGTTTGGC
GGTTTTGATCCTTCAAAATCTGTCAAAGGTAGCTAAATCGATAAAATACT
AAACTTTACAGTAAATCGAACATTCAGTAAAGACACAAAAACTATTTTCA
TCGGGTGTAGgattgattttcaaaagaatttaacTAACTCGTACATATTT
TAGATCGAAAACCTGGACTTGCGAGGCTTGTGGGAGCAATAACGAAGCAT
CACTTTTAGAAAGTAAGAAAGTGTAggattgattttcaaaaagatttgac
TAACTCGTACATATTTTAGATCGAAAACCTGGACTTGCGAGGCTTGTGGG
AGCAATAACGAAGCATCACTTTTAGAAagtaagattttcatttttccgaT
TCGTCACAAATTGCCCTTTTTAATACTGATAATGATAACCTTagagaact
aattttcgcggaacttGTTTTCGCGGTGCGAAGATACTAAATTAGTGCAT
TTTGTGGAACTAATTATCGTGTTTGACACCCACTTTTTGCcgaaattctt
tcatattcctaggggtttttgagaatttttagtataattatatggttgat
tacatttagcttagatttgtaaaggacgagcggggcgataaatccgtaat
agctccgcttttttgtaatcgccctgatgtaaacaaaaatttctaacaaa
atatcgtacgaaatttttaagccaatcaaaataagagtgtcagtcgaatg
tttttttatagtttcgaatgtttatataagtttcgaaaagaatagcgatt
aagcgttcttcaattctttttttgaccatataattaacgcggaataacat
ggtattctcgggtgattttggattaataacccctcgtttcattgaaaaca
cttcaaaatagccctcactacgttcgtgctattttgaaatgctttcaatg
aacctcggggttattaatcccaaatcaccctctcaaccatgttattacta
gtacaaattacATTTCGCAGAAATAATTTTCGTGGTAGACACAAtaaaac
gcgaaaattagttctgcgaaaattagttcccttgaTTTCTGCATGGTCGG
GGTACACAAAAAATTACTATGAGAAAAACATTGGCTTTACAAGATACATA
TACTGTAAGAAATCAAATACAAGAAGTAACCACTCAACTGTTCCTTTAAA
TTGGACAAATTtttcgtgaaattaaattttacattttcacggatctttta
aaggttttagttttaTGTCTTATATCAGGCCGGTGTCTCCTATTATTATA
TTGTGTTCCATTTGGTGCTAAATAAACaaacaataatttttcttttcctc
tttctgaccaattttgctccacatccatgtcaatgaggcccccagcggta
actctgatcacgatatcacgcaaatCTTTGCCTCCAATGACGATCaatca
aatcagcaaaaaattgaataatcacgcatccctttgaaaaagtctaaATC
ACGTATAACGGCTCAAAAACTTTCGAAATCACGAACACGTTTTGATCCCT
GACcacgcaatcacgaaaaaaaaatttccaaatcacgtaatcacgctaca
aaaaagtccctatcacgttatcacgcaaaccgcttggggggggggggggg
gcccccatttttttttaaaaaaaattttcggccccccccccccccccccg
ggggggggggggggctcgtcAATTCTAtgtcaaaaagcttgtaaacgata
tcactcttatctaaaaacaaaatctttaaaagggCGTTCTATTTACGAAA
ACTacactctttttctttcttttttcttcaggaGATCCAAcgaaagaaaa
ggaagaaactGAAGAAGTAAAAGAACTTGCTTCTCAAATCAATTTCAAGG
TAAcagaaaaaatttccatacacgtgttttttatataagaatattcatat
GGACTTGAAAGAAAGAGATAGATGAACATACAGATGAACAGAACATGtcc
taaagtctgtctcgaaataatttgaagctggagacaaaaatggctgtaac
ttttgatagagttcgaatcaagttgcgattaagtgcttgttaaaatgata
ttcgtgagtggaatattatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATAT
CATTTTAACAAGCActtaatcgcaacttgattcgaactctatcaaaagtt
acagccatttttgtctccagctgcaaattatttcgagacagactttaggt
aGCGTCATCTCTTCCTTCGTATCGAGCGTAAAACTcatactcttcgggat
atgcgcACTGCCAATCAATTGtcttttaaacattctttttattgtaaatc
tctattgataaacttcttttgtttgaaacttctattgtttaatttattaA
TATGcgaattcccggtgggggtcaatAGTGGCCGCCCATaacagtgccta
tagaccaagagtaaggccaaGAAGGCTGGAGCTGTTGGATaagttggagt
ttttacaagctcttacttgatttggttggtcgttaagctatcataaaaca
attttgttgctttttctaaagatcgcgtcatctctattactttaaatgac
caattagtgaagtatcttataaaaatttcagctcatcccgagctgtctat
tgtgtaggcTAAACAGGCCCTATCCATGACAGCATTCACTATCCAAGGAT
AGCGAAATTACTACGCTCATTTGGCCCTTCCAGCTCGAGTTGCTGGACGC
TGTATCGTAACTATACtaccgggtgtctctgaaaaaacttctcCCTGTTT
GATTCAAgattgcgaaaaagtgaaaaaatatattagcttgattttttcga
aatcgtttagaggagggtttaacttaaattttggtatatcaaactttaaa
attgcttcattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
gttttttcgtcttttttcgctctttttgaaaacaatttttttactctttt
tgtcataacttttgatctaatgaagcaattttaaagtttgatataccaaa
atttaggttaaaccctcctctaaacgatttcgaaaaaatcaagctaatat
attttttcacttcttctcaattttgaatcaaacagggggaagttttttca
gagacacccggtaGAACGACTCGAAAGTACAGCGTATCCTCAGTATAGAA
ACCACACCACAAAGCCAGGCATATCACAGCACCGTGTGTGAATCATTATT
TACTTGTAAAATGTTATTTATCTCATAATaattctcaaaactttcacaaa
aatgccatgaTGCTCCTTGAAGTATGCATTACATGTTGAATTTAGGTTGA
ATTTGGATCCTACTACCGTTgagaagaatattttaagatggtTTTccctc
aaaaagtttagaatatTGGgagattacacgtttttttttttagaaactag
ttttaccaagcagtcTCAAtgtttcctaagaaatcggcctttttagcctt
aaatgtttctaacatgtttctgagcctcatgtttcttaaaagtgtgtttc
ttaaaaaaagaaaaacgtgtatatattaTAATTATTCCAAATTTGTGTTT
CTTAGGGGGAAGATAAAAGTAAACAGTCAGCCGCAACACCAACTCAATCT
CAAACAACGACAACGACGTCACAATCTGCCATAAATAACTCACAACAACA
AGCAGCTGCTGCACAGATGTCTCAAATGTATGCTAACTACAACCAATTCT
ATGGtatgcaacaacaacaacaaaacccTATGTTTGCCAACCAACAATTC
CAACAACCGTCTCAGCAACAAACACCGTCTTCTCAACCCACAACGACCGA
AACTACAACAACTCAATCGTCAGCTCAACCGAATACAGGCTCTACTGAAA
CAACGacaaacgaaaatactgatacGACGAACTTACGACAACGCCGACAA
GGTGCCGACAGTAGCCGCTCTTCTTCTCCGGCAACGACGCCGACACCAAC
ACATAATCAAACACAAGGACAATCAAAGTTAGAAACTGTTTCGTTTTATA
TGTTATGGATTGTATTAGTACCACTGGTACTCTTGATATTGAGACGTTTA
GGAATGGAGAATTCGGGTATGGGAAaacattaataaaaaaaaaggagATG
AACGGTTATTCCAGAAAATAATATTACCTCCTTTGCTGAAaaggatatat
tttttgatGGTTAAACCCTCTGTGTTTTCGTCGAAATTTCAGAGGTATCT
CTTagtttcttcaaaattttagagatttttcttAGACATGTAACGAAATC
CGCCTAGATTTTAAAGGATTTTCGGCTACCTCTCCCTCATGGACGGAAAA
AACAATCTCCTCAACATGCAAGGGGAAGAACAATTTTTTGCTAAGAGGTT
TTGATTGTGATAATTGCCAATATTTAACAGCGTTTCATTCTTAAAAAATG
ATTTGTCTGAGatattaaaaacgaatgataagATGTCAAGAAGATGAAAA
TACCTTAAAAGGGGGTCTGACACTTGAAGGGCTAACATTCTTTCGTATTT
TTTTGTACGTTGTACGAAAAAATACGATTCATAGTAGACAAAAGACTTGG
CTATGGAAGCTGCTCGGaaagctaatatattttttaacaGTATTTTCGTG
GGCGTTCTTTGAAGTCTTAAGTTTATAAggaatactttaggcgtacaaac
tctcgcgagcagaaactttcgcgattttcacgtattttggccctttttgc
gaaagcaaatgtctttaaaaattctaggaagggccatttgcgaaagttta
tactcgcgaaaaattcttgacaaaatagaaaatctttaaaacttcaagct
ttgaataaaatgtaacttttatggcactttttagccttaaagactaataa
gtcaaaggaaaaatgtttcaagccaatccaagaagtatttgtccctctaa
gccattttgtcatgtgaaaattctcaattttacgtcttgattcgcgaaag
tttatgctcgcGAAAGTTTGTACGCCTAAAGTATAACGCCGTTACTATGT
GAATAAATAATACGCTGCAATTCTTTTGGGTAATGGGCTCTTCCAGAAGA
TGTCCGTACATGGGGTGGATGATAAAGTGTCCGGGGGTAGTGAAAAATCT
ACAAAATTTGTCTTGTCCGGGGGGTAAACTTGCTCTGTTTGGCGGTAATT
TTGCTCTGTTTGAGGGTAAATTTGATTGTCCATGGGGTCAACTGATGCTT
CTCCGAGGGGTTAGACCTGCTGTTCGGGGGTATAATTTCTATTGACCTTA
TCAGAGTTTTTGATTTTTCTAAAAATGCGATGCATTGTGGGATTGTTTTG
AGTGTATTACAATAGAATTCCcttgaggaattcctaagagatttctattg
taatacactcgaaacaatcccacaatgcatcgcttttttagaaaaatcaa
aaactccgataagatttATTCTAAAGGAGACTTGGGGCGAAAATAACAAa
ttgtagtgtttccggaatgccgGTGAGGGAAAAAGCTCTCATGTGGCCGG
CCGGtaatgaattattttttgctatttttgataacttatgatcattgaaa
aataactttaaagataacttttatgtacaaataGTATGAATTAAGCCCTG
AATACCAATGTATCAACTATgctaacgaacaaaacttgatttacaagcgg
gaatatctaaccaaacgacatttgatagcttgaacggtcaaaTTGATTTT
CTATATAATGGAccatgaacccatagtctgtggccgggtcagaatttttt
ttttcacccggctggtttccggaaacactacatttttttttattttcgac
tgacaattcaatttttctaaataccCTGGGTCTCAGTAAAGCCCAAATGA
AGTTCGAGTGATTTTAACATGATCTTTAAGCAGATTCCAATCTCCGTGCA
TGGCACATGTCACTCTAAAGACCATGGCTCCGTAAGAAAATTTACCTAGT
ATCTTTTTCATTCAGATTTGGGTTGAATATGAAATGAGTTTTTGAGCGCA
CTGATTGGCTAAATATCCCTTTGTATTTGCCATATCCCTTTGTATTTGCC
ATATCCATTTAAAACActaaaaaattttgattgtgaTAATTGCCAATATT
TAACAGCGTTTCATTCTTAAAAAATGATTTGTCTGAGatattaaaaacga
atgataagATGTCAAGAAGATGAAAATACCTTAAAAGGGGGTCTGACACT
TGAAGGGCTAACATTCTTTCGTATTTTTTTGTACGTTGTACGAAAAAATA
CGATTCATAGTAGACAAAAGACTTGGCTATGGAAGCTGCTCGGaaagcta
atatattttttaacaGTATTTTCGTGGGCGTTCTTTGAAGTCTTAAGTTT
ATAAggaatactttaggcgtacaaactctcgcgagcagaaactttcgcga
ttttcacgtattttggccctttttgcgaaagcaaatgtctttaaaaattc
taggaagggccatttgcgaaagtttatactcgcgaaaaattcttgacaaa
atagaaaatctttaaaacttcaagctttgaataaaatgtaacttttatgg
cactttttagccttaaagactaataagtcaaaggaaaaatgtttcaagcc
aatccaagaagtatttgtccctctaagccattttgtc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061105TCONS_00061105Clytia hemisphaericatranscript
TCONS_00061106TCONS_00061106Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00061105-proteinTCONS_00061105-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:955020..964906 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.47	11.84	4.06	2.98	7.65	5.97	16.9	18.13	7.79	11.54	7.09	4.44	7.75	6.81	7.53	8.94	10.87	10.42	6.51	7.68	8.09	8.55	12.37	12.2	7.98	8.6	7.92	7.14	10.73	10.96