XLOC_038637 (gene) - C. hemisphaerica

Overview
NameXLOC_038637
Unique NameXLOC_038637
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_36:717432..723367+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038637 ID=XLOC_038637|Name=XLOC_038637|organism=Clytia hemisphaerica|type=gene|length=5936bp|location=Sequence derived from alignment at scaffold_36:717432..723367+ (Clytia hemisphaerica)
ATAATTCACTAGGGCTATTCAATGATGgttctaattttatttgaaatact TCAGAAAGAATTTTGTGGGTTACATGTTACTCGCCTTTAAAAGTAGATTT TACAAACCTGTTCAAAGCAGAAAACAACATCTTATCATCAAtacatcttt ttatttttattgtagTGTTTATTAGATAAGTTAAAAAAAGAGTTGAGAAA AAGTATGGAAACCAATTTCGATGACGGCAACACTTCTCAAGCAAGTGAAA GTAAACCTATCACCCCACCTGCTAATACAAACAGTGAACAGAGGAATGAT GGACTGTTCTTTgcacttgttttgattttcgaGCTGTTGTGTATACTTAC AATAGTGTTATTGGTATATTGGGGTCATAACTTTTTCGGAGGATATGGTT GGGATGGTTCTGGCAAAATGTTTAATTGGCATCCCTTAATGATGGTTCTT GGAATGATCGTTCTCTATGGAAATGGTAAGCAAAGTATTTTTATTCATAC TTCTAATACTTAATGGGGAAATTCAGCTTAGTAAAAAATTTACTATAACT TTACTTGGCTAGCATGTAAGGGGTTGGTTCCCCATtggaatttgaatgaa aatgtcTTGTATTTCGATTCTTTAGTTACTAATGATACTATAATGggagc aaaaatgtttttttattctaataaaaatgtttatcatttTAAAACTTCAT ATATTGCTAATCATCAATCATGATCAATTTATCTTTCAGCTGCCATTTCA TACCGTGTATTCAATACCGCACCCAAATTTCAGATCAAATTATTACACGC TGGATTGCACGGTTTGGCTCTTGTTTTCATGATTGTTGGATTGGTTGCTG TTTTTGGATTCCATAATCATAATAACATTCCCAACCTGTACAGTCTTCAT AGTTGGATTGGTATTTTGACTGTCACTCTGTTCTCAGCACAGGTACTCTT TTTATTATAAAGTAagagcctgaacctttcatgtcaaaagtcccgaaaac actgaaaacactttgtctgaaacactttttctgaaCCTTTCAAGCTTTTT TGGGATGTGTTGGCAAAAATCATTTCCCAGAAACACCTTACCTCTCGAGG TGGTGTGTTTTCAGCATTTCCTGTGTTCCTGGGATTTTCCTAAATCAACT CTCAATTTTCTCTATAAAATCCAAGCCAAAATGCATTACCTGAAACACCG GCAAGTTTCTGAACCATTCAGTGTTTCTCTGGTGTTCAAGGTGTTTTTCA AGAcgattttgaagctcttgcagtgTCCTGTCGGaaccaatcagataaaa atcgGGTTTAAAATCGGGTtagaaaatggagaaaaaatcggaaaaattag CCAGTCGGGACTTTTTTtaacagtcggcttcaacaggACATTCGGTGttt ctaaaaacttttaaaactgaACCATTCgtgttcaaaagtgttttctgcaa accaggtaagcaatgtgttttttaagacatgaaaggttcaggctctAAGT CTGTGACCGCAGTTGGAGGCGACCCAAAGGTAGGGGAAGGCGCCACTCTT TTTCCCTGTATTGCTCAACTTCCCTTGATCATTcttttagttgctgagca ttaaGTACGAAGTCTTGGTAGGACCCGGCAtttgaacccacgaccttgcG CTACGGTCGCTTATAGGAACattaaaatgctaaaataccAGTCTGTTTGC TCAGGTAGATCTTTTATAGAACATTATGAAAAGGCTAGAAAAGCAAGTCT gtttttattcgggtagtttcttataaaacattgGGCCATTCTATTTATAT CCATACGTGGGGGTGAATGAACTTCCAAATGGGGCAGGAAATATCCCAAG AGGTCTaggtaatttttctttcatttttccagcAGTTTGACCATgaccat tttttgaagaaaaaaattaaatgatttGAATGTTCTGAACTTTTTAGGTT TGAATCCTTAAAGTGTTATAAGTAAATGTTGAGTATGTTATAGGCTAAAA AGGTGATTTGGTATTGGTTGTAGCTTAGTATCATATCAATCTAAGCTTTG ATTTTCAATTAGTCCTAATAGGGATACAGAGCAATTGCTTTTAGGACGTT TAGCACGtttaaagccattgaccttttacatagttgGCGAATCTCGCAAG GAAAATGGaggaaaaaatcgatgaaaatgaccaagaaTTGCCGCTTAAAA ATGAGGTTTGCACCCCAGAAAAATGCATTATTANNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNATGGAACGAGTTGAAACATGCAGAAACACCAAAATCGAAGGACttcaa aaggaaattaaagcatgtgaaaacatcatgaaagtacaaaatgaagaaat ctCCCAACTTAAATCAAAAGACGTCGCTGTtattacaaaagaaatcaaag aaagcctCGAAGCAAAGATGAGCATACTCGAGAAGAAGATAGAAACAAAG ATCGAGAACATCATAATTGAAAAGAAGCAAGAGCTGAAAGAGGTTAGTTA TGCTGAAGCTGTATCCAAACATATGAATCAACAATCGAATAAGGTGGAGA AAATAATTCGAAGTGAAACAGTCGGTAAACAACGATCCACAGCGTGCAAC CTAATTTTCCATGGAATCAAAGAACATTTGGAGGATCCTGAGAATACAAC GAAAATTTACGACGAGAAATTTATCAAGTACAGAGTCCTTGGATTACAAC TGGGTATCAAGGACATAAAAATTGTAAACACACAGAGGATTGGAGTATTC ACGNAAATAaataatgtatgttgattcagcagattgaaataaatagaatc ttttgtaatgaataaagaaaaatgtggagcaagatttctttcttcctttt atttacaaatttgaaaggactcttttattaaaattttgctgacatcagtt tcagacgagtcgggtgtatataacaccgtataatcCCTTTAACACTGCAA AATTTTTTAACTACAGTAACATAAAAATCTATATTTTCTCCTTTTAGTAT TTACTTGGATTCACAGCTTTCTTGTTCCCCAAGTTTGGTGACGACCTTCG AGCTATAGCGTTGAAATACCATCAATTCTTTGGACGTGCAATTTTATATC TTGTTGTTATTGCGTCTGTTTCCGGGTTaactgaaaaaatgttgtttgcG TAAGTTTTATACATTCTATTTCATTTCCTCGAAAATTTCCCGAGTAAAAG TCGAAGAAAACtgagaaatatttcaaattctaaGCTAAAGAAGATTCAAA CTTTGGTGGATAAAATCATTAGATAGCTTTAATGACAATCTCGGAAATAT TACTCTAACCAAACATTTTCTTCCAATTCAGACATAGTGCGGACTACAAG TATTTCATCCCTGTTGGAAACATTGCTAACGTTATTGGAGTGGTTCTGGC AATCATGGCAATGCTTGTCGAATACATTGTCCACGAGCCAACATTCAAAC GTGAAGAACCATATGAGGTTTTACAATAATCaacatttttgttcaaattt tagtTTCTCGCCTCCGATCATTCAGTATTCGTGCTTTTGAAATAACTGAA TATAGCTTAACTAACCTGATTTATATACAAATTTCTCTGAGTGAAAATAG agagtacatgttttttataagaattgcaCTTATAGAATATCTAGGCtcat ttttttggcaaaaatttaagcatatgctaagcattatACCTAGTGCCTAT CTTTTCAGAGTTATCtctttttggctggaattttacggattttcctaaaa ttttgcTTGTATAGATGCATCCTTATAAGCATTTTTAAGCCTTGTCAAGC CCTCGACCTAATCATCTCCGAgcctttttcgaatttttgtatgcttataa aaaacatgtacaattGATAAAGTGGGTGAAATTAAATTGTAGAGACAGTA GAAAAATTCACCTGTCGTTCCAGTTTAGATGCATGCTATTATATTAAACT ATCAGACATTTGTAGGAAATTTAAATGCATGATATTTATTTCTCCTCCTT CTTCAGCCTGTCCCCGTGTATTATGGACACGAAtagctttttaaccaatc actGACTGACACCATTTGACTCACATACACCTCATATAACTAACCATTGA TTGCCGAGTGCCATTGAATATACCANACGTGTAGGTCTTTAGTccgtctt tgtttttttttaacgttttgttttacttttgagATCTACATAGGACTCAC CTTTTCCATACGTTAAAAACATAATACAGTCTCGTTCTCAATTAGAGTTT GTTTTTCATGGATTACACAATGTTTTATTTTATCCCAAATTTCagtttag atgttcttataaactgggttctaataagaAATGACAGAGCTGGCACTCAA CGTCACAACAACATTAATCAATCATCAACGACATCttacgttagatgaac gttgaaataacgNTTATTAGGTGTAAGAAGTATAATTTATATTCGTGTGA TAGGGTAGATGTTTTAGATgaggatacacgtttttttttttattagaacc tagtttataagaacatataggctgaaattcgtcgaaaaattaagaacatc ttaagaacatgcccagcctcagtttgNTTGTTTGGGTCATTATTTATGTC TTATCTGATATTcactttaaagggacataaaagtagtaagatgtaaacat tgcgcgaaccatgTGTCCTTAAAGGGAACAAATAAAATcatgtgtccaaa acaaacttgcaaaacaattgaaacaatcaaaatcagccatatatgttttg attttgtatgcagcggatacggtttgtttacaaatttcgtcagtactttt atgtccctttaaacacAAACACACTTTACTGTACTTTTctttagaaattt atttttgataaatgtGCGATTGTCAAGTAATGGATTCAAGTCTTGTGTTT ATGAAAATTTCTCTTTCTACTATTAACAACAATTAATTTTAAAGGTGAGA CTTGAACTCCTCTCACCTTTTGACTAAATACCactttgattatttttgaa gaaataaaatGATAATAATTTCATTTGCAAATAATAGTGATTAAAACTGA TCAAaatttacatgatttttttttggttaacATAATATTTTTGTTAGGAA TTTAATCTATACAActgcattttatttttattttttcatatattatgtca actctctctaattcgaacttctataatcTGGTTtagaatactttctataa ttcgaatttttctctaattcgaagaaaagttATAATTCCTTGAACATCGA ATCAGAAAGAGTGAACTAtactaataaatattttttggtagatttttatt ttgttgatctAACACAAACTTAACGGACAATGCTCATAATTTCCTTTTTT CCGAATTAAATTTATTTGTGAAGACCAAGAGGGAAAATGAGCCTTGGCTG TTAAGAAATCgggtataaatattttttttcagagtaTTGCTTATAGAATT GCtctgttttgatttaatttatcTTATATTGCTAGAAATTATTGGATTTT AGAAGCAAAGGTTTCTGACATTATTGCCAAATAATATCAGGTAATATCAA TATTTCTTAGGAGCTGTAAATGAAAATTAATATAGGGTGAGatattatat ataatatatattttatgatttatttcgattAAAGAGATACGGAGAAAATT ATACAATCTTTCGTCCTTCTTTATCCGATCCCTTAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061578TCONS_00061578Clytia hemisphaericatranscript
TCONS_00061579TCONS_00061579Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00061578-proteinTCONS_00061578-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:717432..723367 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CYBRD1cytochrome b reductase 1 isoform 1 Homo Sapiens
CYB561cytochrome b561 Homo Sapiens
CYB561A3PREDICTED: cytochrome b ascorbate-dependent protein 3 isoform X2 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.44 6.17 3.15 4.23 115.71 87.75 109.68 108.73 66.98 67.17 72.45 64.43 19.29 17.21 12.98 14.61 16.5 19.99 12.32 13.55 24.74 26.39 14.12 15.17 8.27 10.86 7.37 4.48 15.65 11.25