XLOC_039250 (gene) - C. hemisphaerica

Overview
NameXLOC_039250
Unique NameXLOC_039250
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_370:323082..329499+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039250 ID=XLOC_039250|Name=XLOC_039250|organism=Clytia hemisphaerica|type=gene|length=6418bp|location=Sequence derived from alignment at scaffold_370:323082..329499+ (Clytia hemisphaerica)
ATGAACTATAATGTCTGTCAAAATTGAATCGGTTTGGAACCTTTACTTTG CTAATTTCTATCTGAATTTTTGCTGACAGTGCGGAAAATCCATTAAGGtg atttgaagagttgttttttgtgtgtttttttgtGAACGGAATttgtattg ggctcttccagaaaatgtccgtacatgggcgGGGAttgaggatatattgt ccggggggtagcgaaaaataaTCAAAGTTTGCCTTGTCCGGTTgataaat ttgctctgtccggggggggggggcaaaagcCACTTTGTCCGGGGGGGGTA AATTACTGAAAATTGTTACATCCTCCACCCCCCTCCATTTTCATTTTTTT TTCTGGAAAAGCCCATTCGCTGTATCTTGTTACTTTTTGAATGACCCAAT TTGCCAAATTAGGTTTGTTAAATTCGCAGTTCGTCGGGTCGTCAAGAGAA AACGAGGGTTTCGGGCGGTTTCAGGGTTTTGGAAAAAAAAATTAACAAAC GCTTAGTTAAGACATTCCTCGAATTTTCTATGTTTAGCTGTCCAAGGAGA TGATTAGTTGACTTTAAAGATCTTTCAGGGTTAATTAATTTGTCCCTGAT TGTTAAAATCGAATTGTAATTAATCCCCGAATTAATGTCTTCTAATTTTT TACGTGTCTAAAATAATTATTTATTGTGGTGCGCTATACATTGGAAAAGT TTACGGTATAAATCCTTTTTCTTTGCCGACAAATTTTCCTACCTATGAGT TGTAAAGAAGGATGAAATTGAAAGATATTAATTATAAATTAAGATGAAAT AAAATATGTGCTCAGTggggggggtactaggtttatAGGAGTACAACGGG GTGCCGGGGGGCCTTGACTAAAAAGTAGGAAAATGTTTGCGAATTTTATG ATCCTtaaccttattgggactaatttgaccaaatttcgatgttTATGGGG GCAAAAGATTATCCTATTTTCCGACCATTGATGGAactgaaatttaactt ttagatTTTTCCAGAATTTACATCCTTACACGGACTGCCAGGCTCCAAAA AGGCACCCTCAAGGGCGGTACGAGACCCTTACCCTTCACTTGCCTCCCCC CcactattttttgaatttttatggtaATAATTTTTAGGTGgatgaatttt taaaagttttatagagTTTGAGCTGTCATTATAACACACTGCTCCATCAC ACACTAATATTTATATTCTAAATAATGAATACTTTTAtaattatattatt atatagCTACTTATAACTCAATAAAGATATTTTGTGTAAGTAGGGCTTAA AAATATGGTgtccttttcttcttttaagaGCATGGTGTGCACTCGGcctt attttcgaatgttttcatgTTCGAAGTTCGAATTCGAATCTTGTTCgaaa tcgaatgtttatgttCTTATCCATAATGGTAGTCAAAAACATTCCATCGT TacggaaaacaaaaacattggcTCTCagatcaaaaatcaagaaaatacaG AAGAAAGTGTGGACATTATCATCATTTAaatctttattgaaaaaaaatca ttatttataACTTTTCTAGATCAGCTGGACAAGCTCTTCGATTTTCAAAG GTAGTTTTTCTtcgttttcaaagattttagtcGGTGTTTTTCCAAGATGA CCTTGTTAGTCATCGTCCCCAATTCGCCAAATCATTTTTACATTTGATGG ATCTGTGTGTCCCCGATTTATCTCCCTGGGGAGGTGGGGTACTGGGGTAT GAATgtcccaaaaatctaaaaaaaatttagtttctcTACCCTCTACATCC TATGGGCGGTGATTTTGTCAAAAGCAACTGCATTAGCTGCAGCAGAAGGG TTTCTGCTGGTTGATCTTTGCATTAGTAACTGAAAAATAGTGAGAAAAGG AGACAGTCTATATTTCCAAATAATCTTGGATTTTTATCAGAATTttctcc aatttttcaaaaagctaaTGAAATATTATCTTGAAAGCTTTAATTaacca atgaaaaatgaattgtaAAGGTaaaactgcaaagggtggtggtatGGAAT TATTAGCTACAAAAAAAGACTTACACCGATGTCTGGTTAGTAAAAACTGC TGGTCCAAATTTTCGGAAACCGCGTTTCTCAGGAATCGTAGGGTTTGTCA GGACTTTTTAATCGATATTTAGCCTTTTGATTGAGGGGTAAAAAAACATA ActtgttttttcatttgccGTCGTAGGcactgaaattagatttattttga ACGGACGTagatttatttaaatattttttctgtttgCTTTTTCAGTATTC TTGCATTATGTCTAATGAGGACAGCAAGGAAAATTTGCTATCTTTACACT TGCACCATTTCGCACGTAAAAACAGACCGCTCAGTCCGTTCATCTCCAAA TTACGGTTCTTGTTAAACTGCACCAAACATCAAGATGCTATACATTGGTC GTCAGATGGTAGAGCTATCGTTATCACAAATGTTGAAGTTTTCAAACAAT CTGTCCTGGACAATGAAGCAGaaatgttcaaaacaaaaaattttacttCC TTTGTCAGGCAACTCAATCTCTATGGTTTTCGAAAGGTaactgaaaaatg tttttatatgcaAGCTTCCCTTtgtctgttttttttctcgctcATCAAAC TCTTCTGTCCTGGAGTCGTGTGACCAATGTgactagcctagaaatctaag ctactttaggcgtacaaactttcgcgagcagaaactttcgcgaggacgaa aaatcgcgaaattcatgacatttactttcgcgaatttaacggaaaaatat NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNaaaaatatttttcgcgagcataaactttcgcgaatcaagaagt aaaattgagaattttcacatgaaaaaatggcttagagggtcaaatacttc ttggattgacttgaaatatttgtcttttgacttattagtattttagcagg ctaaaaagtgccataaaagttacattttattcaaagtttgaagtttaaca gattttctattttgtcaagagtttttcgcgagcataaactttcgcgaatg gcccttcctagaatttttaaagacatttactttcgcgaaaagggccaaaa ttcgcgaaaatcgcgaaagtttctgctcgcgaaagtttctacgcctaaag tagtttgattcagtcacttggataaatctgatggttaagttgtgactgaa taactattCCAAgcagggggggtcggtagtaaaatctcagacataatgac gtgtactacggtggtggtgtgacaaaaaatcgaaaaaaatttttactacc tagggtagttaaatactaaaataggtggtatctatgtgctggttaaatgt tgaaaaaattttactacctgggtagttaaaactggtaaaattagcaaatt ttagctatttttgtaattcttttaattttttggatgacttttctgaaaat atctgaaaatttttaaaagttgaaaaaattttctgttggaaagttgctTG CTccaccaaaaaataggtggtctttatgacaaattgtcccaaaaactttt actaccagggtagtaaaatacctcttccaaaagtctgggtggtggtatgt aaaaattcgtaAAAATCCTTTTACTACTCATATATGTCTGAGATTTTACT ACCGACCCCCCCCCCCTGTTCCAAGGCAAACTTAAAATCCATAAATATAA AAAAtcttaaagcgccgaaaacgctatattgcatAAGCCgcgtgtcctag ccttgtgaatacgggcttagttaactaggctacaATGTGACCAACGACCT CTAGAaacaaacttgatttttttgtctTAAGATGTTTCGAACTAAACGAA GCTTCACGAGGCTTCCAGTCCTCCTCGCCTAATTATTTTGCAAGGAGGCT TTTACTACCTTGAGAGGATATCATTATAATCTTGTTGCAATCTTTTTTTC TACAATTTCTTTCTCAGGTACCTAGTAACGGGAAATCCGATCCTGCAACA AACATGAAATTTGAACACACTAATTTCCGAAGAGAACGCCCAGATCTCAT GCAATACATTCAAAGAACGTGCGTTGTGGGTGGAAAACGGAAAGGGGAAC TACTTACCACTTTCAGTCCAGAGACACGCCCTTTGGCAATGAAAAAAGCA ACGCCCATTTTGTAAGTATGTTTCTTtctcggaatttttttttattgaaa caagATTTTCATTCGACACTCAGGGATAATAGGGATTACTATCTAGCTTT CTTTCTCGAACGAATTTTTTATCCTTAGCACACGGTTTTGTAGAGATTTG AGATTCAGACTATAGAATGTTCTTGTCAACAAGTACCAGCTTTTACTCTT GTTGCTTTACTTCAACCAGTGTTACCATTATAAGTACCTCGTTATGCTCA TTTCAGATACATTAAACACGATAACAAAGAGAATATATTTCAACATCAAA TTCAAAGTGGACTCAATGCTGGTAGTATTGTTGGAAAACCTCTTGGTCTC TCTATACTTAAAGCTGTCAGCACAAATGTAAGCATACAATGTCTATGTTT ATGTTCAAAATAAATCCCTTTgacttttataagaaccagtaaattttggc tgagcTTGAGACTGATgttaaatttctattgttccaaacaatAGAGGTAT TGTTCTGAGGGCCTAAATCTGAGGCTGATGTTCTTGCGACTTTTGGAATA AATGACATTCGCGACGGAATCTTTTATCGGAAATATCAGAAATATCCTAG ACATCTATCATATTTATCACGATTCAAATTTGACATCGCTAAAAAATACC CGGTTTTTACGAGTTACAGATGGTTCCTTTCCCCCTTTTAGATACCAGGA TCTTCAAATGTTTCTTTGATCAACAATCAACACTTTGCCATCAACGTCAA ACCCAACATACGAACTGTTTTTGCACCATCCAAAAATGTCCTATCAACTG ACACCAAAATCATCTCTTTCAGGTTTGTCTCACCTTTGACGCCTCTTTTC CCTGCACTTAGCTATGTACATTCACATTTCCAAAACGgaatttcaaactt taaacTTTCTGAGTGGCTTTCAAGGCAAATGAAACAAGTTTAACATATCA ACTATGATATcgttggaaaaattcttttcctcgGCTATTGAAAATGCCAG AACTTATTTTCTTGAGTCTCAAAAATGGCCGGGAGTATTGACCAAATTAG TGACAATTATTGTTAATGAGTTTTTAAAACTCAAGTCTCGATGTTTTATC AAACTATCATGAATCCTACAACGTTAATTGAACGAACGTTAAACCAATAT TGTATCCCcaagggggtacttaggcaaaatgggtgccggatTATGTGCGA GTCatagggtccctttttcacactcCCAAAACTCAAagctcaaaggggta caaaaaccattaaaaagcaaatgaGTCTCTgcaagggttccaaaattacg aaaatcaaaaatcaactcCTTCATACGTTCATAAGTTCTTAAAATTTAga ttaagatttaaaaaatttggctAGAATTTTAGGGAAATAGCCTCTCTAAG GGCGGCAAAAAcgtcgaaattcagtctctctaaaggtcaATTTTCCTAAA TAATTAACAAATTGACCCAATCTGTTACGCAGTTTTTTATTACACAATTC GATTGAATTTTCAGCCAGATTATTGAGCAAAACGTCAAAAGTTCGCCACC TGTACCTCGCACTTCTTCACCACAACAAACTCATCAACCAATGGTAGCAG ATCCTACAACCGAAAATTTACACATCTCAGACAATCCACCAAACACGACC AACAATGATTCAACCACCGAACCCATTCTCTACTCAGTTACCGATTTACC AAATACATCAAGCGAGCATGATTATGCTTTACCGACAACACCCGACAAAT TTCCGATCGTTCCCGACGAGAAGCCGGCAATTCACCCGACAAATACATCA TCGCCGAAATCCCCTCCAATGATTACCGATCAAgatatttatcaattttt aaacgAGAATTTCAGTGCTGAGAAAGAAGTCGTACAATCCTTGTTAAGTT TACCTGAAAGTCAACCTGAtcaaatttttgatgatttgaagACGCTAGCT GAAGTCTCCTCAAACCCTCTGCTTGGTGTTGATAACGTTATCAAACTGCA AAGTGGTAATGCAACACCTAGAGAAACTGTGGTTTCTGTAAACCATATTT GAAAGAACGATTANTGTAGTGCAACACCTAGAGAAACTGTGGTTTCTGCA AACCATATTTGAAAGAACGATTAAGCGGTCCCTTTCTCTAGATGTAACGT CTAGTCAAAAATTCTGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00062632TCONS_00062632Clytia hemisphaericatranscript
TCONS_00062633TCONS_00062633Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00062632-proteinTCONS_00062632-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:323082..329499 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22 0.34 0.13 0.03 0.59 0.42 0.73 0.74 0.67 0.68 0.44 0.66 0.7 1.11 0.67 0.45 0.38 0.9 1.1 1.04 0.71 0.6 0.31 0.31 27.67 17.91 0.41 0.47 0.67 0.54