XLOC_039440 (gene) - C. hemisphaerica

Overview
NameXLOC_039440
Unique NameXLOC_039440
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_375:352371..361852+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039440 ID=XLOC_039440|Name=XLOC_039440|organism=Clytia hemisphaerica|type=gene|length=9482bp|location=Sequence derived from alignment at scaffold_375:352371..361852+ (Clytia hemisphaerica)
TCAAGTGAGGACTACAATGTGGCTTGTATCCTTACCCTTCCTTCTTATCA
ACGAATGGGGTATGGGAAAGTGCTCATCGAATTCAGTAAGTTTCGTGTTA
CTGTCTGAAGCTTGTTTCTTATCATCGTAATTGTTATATTTTTGGTATTA
CGCgtttttataaggaactttaACTTGGCTCGGAGTCTTATTTTTTCCTG
AGAATCTCAGCCTCAAAACTCCTCCTTATTTACTTAACTGCTAAGACATT
GATTGAATGTTGTTTCGTTgatattttatcatatttttgtaTAGGTGTTT
GTAAATGTGTGCAAGTTTAAATTTAGCCCTTACCGttctttaacttgatt
tttggacctacctcggaggttctttaaattaaccgatgttcgtccgtttg
tctgttaccagttttttttcatcattatttttttctattttttttttttg
ctcaaagatgcgtattagcaatgttcaaaacatggccgagtccgattttt
gagaattttttttttccggccgaaaatgccggaaatatgccggaactGGC
TTTTATTGGActtttttctaatatttctttgtttttttcgcaCAAAAACA
TAATTGATAACAATACCCACCaccaagcatgattcaattgtcaataaaac
tgatttttgcaaccgaaactttctatttcttttttcactgCTCCTGTTCC
CTCTCCCCCCGCTCCCCCCGCTCCCCCCTTTCCCATCAACaataaatgat
gaaatttaatgcgttatggaTTTTTGCTAAACggtatattttctgactga
atattttcatttttctccttattgctttTGCTTGATGTAATAATCATTTT
CTTAGCATCATTCTATCGAAAGTAGCGAGCCTTTAGTTTTATACTTTTAT
ATCTTTACTTTGATTTTCCGTTTGTTTTCATGGTCATCCATCATTGGCCA
TTTTATTTCTAGAAGTTATGTGTGTGAAAATCAGTTTTTCTAACTCAGAC
GAATTAGTCtgtcttttttaatttgaatttttttgactatttttagtaaa
tgttggatttgataaaaaaagtgaaaactaaaaatttaattttattcatt
gtttgacgtttcggtgtcttctttgcaccatgatcacaagtatagtaaaa
aaaattcaaaacgaatttcaatttacaacattaaaaaaaaaatcacaaaa
ttaaaaaattactaccaGGTTGTTAAATTTCACAAAGGAACGCATACATC
CTAAAAGAGCTCAAGGGGGAATGAAGagtttttttgagtttcaacCCGTC
ACTTAGGATCAAGTCGTCAAAGAGATAAAGAATCTTCGAAGTGACTGCTC
TGCCGGGTATGACAATCTACCAGTATCGCTGATCAAACCTATCGCCGACC
ATCTAGCGTCACCACTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTCAAACCACTTTCCATCAGC
AATGGAAAATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAA
CTGAACAGTCCGTCACTCCTGACCAATTCAGACCCGTCACTGTTTTGCCT
ATCTTATCAAAACTTTACGAACGTTTAATGGCAAAGCAGATCGTCAAGTA
CATCGAAAGAAACCAGATATATCAACAAACCATGTCTGGTTTCCGTAAGC
GTCATTCTACCGAAACGCTCCTAATGAAGATACGAGACGACATCATTGGT
GCGATGAACAAAAGCGAAGTCACACTAGCCGCCTTTCTTGATTATTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGA
ACACTGTAAGACAGTAAACCTCCCAGCTTCAATCGTCAACTTAACACATC
GTTTAAACCAACTTAGAGAATGGTCAAGCACTAATAATCTGGCgttaaac
aacaaaaaaaccaaAATCATGCTACTGTCAACACTGAGAATGTCAAACCT
TCACGATTTCATGAACCCCGATCACGCAACCTTTCGTATCTATCACACAG
ACCAACTGATAGAACGATTTATCGTTTATAAACTTCTTGGCATCCAATTC
GATCAAAATCTAAATTGGCAAACTTATATCGATAAACTCGGTCAATGCGG
AAACAACTGGCCGAAGCCCTTCTTATATCGAAGTTACACTACTGTTGTTC
ATTGTTCTGGAACCTGCCACAAATCCAGTTGAAAAAACTTGATAAACTGC
TATGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNact
agggttggtgaatgaggggtatgtgcggacaggacctccgaaaaccgacc
cttagagagaccaaattttagtgaaaaggtgacccttagagagacttttt
cgaaaaattttctgtgattttcaaaaattccctacccttagtgagacttt
tttgtaattttctctctcaaaatcaaattttttttccagaaatcgtgatt
tttcccacccttagagagactactttgaaatttcctgatttttgtaaccc
ttagagagactttgaaaggtgaaaaacccgacccttaccgNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGAGACT
AATGTATCGGAAAAATTATTTGTTGGCAAGGCAAGTCGCCTTTTGAATGA
TATTCCAAAAGCGATCAGGGAAGAACCTGATCACAAAAAAATTcgcaata
tttaaaaaaagtatttattagATCGTAGTCTGGCAATATTTTATACACAT
TATATCTAATTTTTTATTGTAGATTCTATGATCATGAGGTCTAGTGGTTA
TATTATTAATATTTACCTTACAatatttacttgatattttagtCTGGTGG
TCTGATCAACACTGAAATTTTCGCAGGATTAGCCACTCAATACTACTACA
ACTCAACcgaacttttcctaatttaacCACTACAACACCAACAAGCTATA
CTTTCTGTTTTATAATCTGTAATTTTGTAAGCTCTGTCAGTATTCTtgag
ttgttgtttttttgtgtgttttgtttctacagcatatttttttcatagaa
tataattatctttttatttaaatatgattatttttacataCGACGAATAG
CCTTTGTAAAATATGGAAGAGCCTGAAAGaccattaataaaaaaaaaaaa
ataaaaaaaaatgaagagacATGCTCATTCAATCCAACAGTTCAATGTTG
GATTCTTAAGATTAACCTACTCTAATAAGACATAGCATATTTGATTCATA
TTGGCATTTCAGATAGCATTTGAGTTGGTAATATTTTGCTTTGTCTTCAT
TTTCAGGTTACGAGCTATCAAAATTCGAAGGGAAGACGGGACATCCTGAA
AAACCGTTATCAGACTTGGGACTGTTATCATACCGATCATATTGGTCACA
AACCATCTTAGAAATCCTTCTTCAATTGAAAAGTGAAGAAGGAACAAACC
CTATAATAACTATAAAGTAAGAATTTTCTTCCAATAAGATGTTGTTTAGA
TAACATACTTTTGTGGGGTTCTTTTGATAATTAGGTAGAAATAGGCTACG
TTACAtattccttcgtttcgagcgtaaaactcctactcttcgggatatgc
gcactgctcttcttttgaaaagtgatttttttaaatttacatTGCATGCG
CACTAACGTTTTATTGAAACAATATAGTGTTTATTCGGAGCCTTACCCAA
TCAGCcatgttttaaatattctttcattTGATATCAGGGGGTACATTCGC
AAGGTACTAACCCTGATTATCAGACAAATTTGTCTTTGGTACTATCCTCT
TTTTAGTACCTGGTGTTAACTTTTTCTgaggaaaaaaagggaaaacacAC
CCTCCCCCAATCCCAATTCCCCAATCAGATACTGGTTACCGAGGAAAATA
ATGGCTACATAACCTTGTTATACATAGCAGTCAATTTCACCTCACCAAAG
TGTCGGAAGTTCTCAAAATCTGGAAATTCATTTCTGGCAattcgattttt
caaaattatttaaaaaaatatgaaaatcaaaaaatatgtcCCTTAAATGA
AATCTGTTTTTCGTCtggaaatttttcggaaaattgacaaaattcttttc
tgATTTGCCAAAATTGATCATTAACCCATTTTATCCATTTTACCAAAGAT
TAGTGTACCAGGTCAGGGACtctttggacctaccccggtggaggtcctat
aaatccgtccgtccgttcgttaccaacttttctcgagattggctcattag
tttttttctgattttttgcacaaagatgtgtaactcgaatgtgacagagc
ccgattttcaaaaaaaaaattttgggcaaatttgggccaaaaaacgccta
aaaaacgggttttttggactttgtgaaaaattggatcattaattttttct
gattttttgcatgaaagtagggtaccatcatagataaaagatggctcaag
cagattcttgcaaaaaaatttagttggctcaaaaaacgcaagtttattta
taagaatcactattaataagcatacatcaatgttcttagtcaaattactt
aatttttttatgagatagatgttttttttgctcatgagggcttacttttg
aaaaatatgtgtgtttagacatgaaactttagttgcttggcgtgttttta
tagaaaaactggccaagttcgatatttttttataagcacatcatcaatta
cttaggtattagcttttctcgagattggctctttcattctttatgatttt
tttcaaatgtgacggagctcgattgggctcttccagaaaaaatttttaca
tggggggtggaggatatattgtccgggggtgtaaatttaaatttggtgTG
CCTGGGGGTAATTTGGTGTGTCCGGGGGGTCggcagatgcttgtccgggg
gtaaaacctattgtccggggggccaaaagtcaccctgtccggggggtaaa
tcactaaaaattgttatatcctccacccaacaaaattgatttcaatgttt
tttttcttacttttttttcatcgaacgttttaattgcattcgaaatttat
tttgtgagaaagaaaatcaataaacaacaataaatgaaagacataaagag
aagagaaaaatatgtAACTCTCaatgtaatttctgtaattttctttccta
actgggaaaaagtagtgaaagccatcgtgcgattagctcgtaatcacata
ataactcgtacaattcgaaaattgcaattatattcgaattgcactcgtta
ttaTGTGATATGCATTACCAGGTAGTTCCataaagtatcacttgtttaat
aTGTCCGTATAacggccaaaatactcaatctAAGATTGAGTTTTTGAAAC
ACAGGACCCCCAGCTACATCAATGTACAGCTTTGCTGAGAACGTTCCCTT
TCAGGCATATTAAAAATTCAAAGTCCCAGATCGTGTCTTATCTTTTAGTT
ACAAGTTACTAAGTTACAATGAATAAAGAGAATGACTTCAGATTTATTAT
ACTAGAGTGAAAAAATATTAGTTTGAATAAAATATAACAGTGTTCTTAAG
TTTTCCTTACCATATCCTATCTTGAAATAAGTCGCCTAACATGCTAGACA
AATAAtatagaaaagtaaaaatatctCAGAACTAAATGTCAATgtgaata
aaaatttaattagctttttttcTTGGTGAAATTCCGGTTTTGCTTAGCTC
TTTGGACAaacttttgatttcaatttcaattttgacgggATTAATGATGC
GGGGTGGATCAATATCATCAAAGATATCAATCAAATCACCCCCTTGCTTT
TTTCTTTCCTCCACTTTTTTCTGTATTTCGTCTATATGAGCCTGAGTTGT
TAAAACCCACTCAGTAGGGACAGGTAGTTTCAACTTAGATATCTCATCTT
TTGGTACTGCTTCCCCATATTTTTCTCGTATTTCGTTCTCTTTGTCAAAG
AAAGATGTTGTGTCTACACATCCGATCGGAAAAAGAtttaaaacttttgg
ttttggttCGAAATCCTTTTTAGATTCTTTTATAATCCGTTGTTCAACCT
GCTCCATCCGgttatttgtttctttttttaccGATCGATGGGTAAATCCA
ACTTTCACCAACCTAGTTTTCACATTTTCCCCATAGGGAGAGGTCAACCC
ATGTTCATTATTCAAAACGATCGCATAAATAACAGGGCCCTTATTTTCTC
TGCGGATACGGTCTTCTATCTCCTTTTTCTGAGCATACTTGTTCAGCTCC
TTGATCAATTCGCTACCATTAGAACCTTCCCAAAATTTTCGTTTGAAATC
ATCTAAGTTATCGATTTCTTTAAAATCCAACGATGCCATATTACGTAGTG
TTTGTCCTTCTGTCCAGTTCTAAATGTCAGAATCTATCACTACCAGATTT
CCCTCTTTTAAAGTCAATGTTTTCTATTTACTGTCAATTTTGTTGCCAGC
TGTTAATATAAGTAATGAACAGTCAATGCAAAATATTGACTGTTAATATT
GACGTTCATTATATTCTATTAgctttcaagaaaatgttttataaATTGCT
GCGTTAAATCTATAAGAAATCTTTTTAACTGTCTTATTCGTTTTCAAATT
AATAGGTCCATTAATTTCTATAAAACTTTTCACTTGTCTCAGCTCatctt
ttcttaaatttcttaaatagtctttctttgatttttcttagCTTTGAAAA
CTAATCTGTAAAGTCTAGAAGTATTTTCGGAGTATCCATATAAAAGTATT
AATCCATACTCAAATCATAATATCCTCGAAGTATTAATAAACCACTGATG
TCCTTAAGCAAAATAGACACAAATCGAGTATTTCTTTGAGTCATCGGTAA
AAAATTATGGGCCCCTTCTAGTGCCACAATTGGGCTTCTAAATAATGTAG
TTGAGTCTAATACAATGCGCGCGTTCAACTGATTTATCATCGATGGTTTT
ATTATATCCGCAgatgcaaaaacaaaacataagtCATATAAATAGTCGAA
ATAATTAACCCAGGGCAGATGCAgatgcaaaaacaaaacataagtCATAT
AAATAGTCGAAATAATTAACCCATGGCTGGCAGGACATGCCACAAAATGA
CTCATACTTtcaatctgtttttttttcagtgaaatATGTGAGATGACGAG
TATACGAAAAGAAGATGTGATCTCCACACTCCAACATTTGAATTTATTAC
AGTATTATAAAGGACAATATGTGATCTGTATAACAAAGGAGATTCTTGAG
TCACACTCAAAAGGAATGAAAAAACGCAAAATAAGAATCGATCCTAAATG
CTTGCATTGGCAACCGAAAGACTGGGCCAAACGTGGTAAATGGTAAGGCT
GACGAGTGAGAATGGTGATATTATTTGGTCAGTTGATGGATTGAATTTAA
GTAAaacacctctgtctcacagctccggtggaacttttttcctcagtggg
gattaAAACTTCTATCGAAATTCCaaaggggatagaaattctattgtacc
aaggtaaaaaaatccagtgggatggttttggagtgcaatttagGGATGAA
ATGAAAGTCTATTCCCCAGTGGGCTGAAATTCCacggtattttcccaccg
gggacgacttttttgccaaattttccagtggggctggggtcccagcgggt
ctgtgagaaggtgtAGAAATGAGTCGAAGAAGTAAAACAAAAGTAAATGA
TTTCATTACTTTACATTAATTTTAAGTAGCTCTAGTAAATCTGAGCACAA
GAGTGTTTCAAAATATCGAGAACGAAGGGTCCTTATCATATAGCACTATG
AAAAGCTATGAAAATGCTTGTCCAAATTTCCGACTATATCCATTGTTAAG
GCGAGCCATGACCCCAAAGACGTTTGTATACAAATCAGCAGTGAAGGCTT
CATCATAACATTAGGTTCCTCTTCTAAGAGTACAAGTACTTTATTATTTC
TTTGCTTCCAGTGTTATCTTTAGAAAACATTTATATTTTGCCCATCTGTA
CCTTATAATAGTATTTGAAATTGTATTTTGTAAATATATTAGATGATTCC
TATTACGATTTAAAAACATTGTCAAATTTGTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00062969TCONS_00062969Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00062969-proteinTCONS_00062969-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:352371..361852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.65	11.44	5.29	5.82	23.23	17.34	13.45	14.91	7.56	8.02	9.24	8.62	6.76	8.98	9.05	10.44	7.14	8.91	9.07	7.12	6.19	7.24	11.46	11.2	16.81	17.05	5.57	6.42	5.54	6.25