XLOC_039643 (gene) - C. hemisphaerica

Overview
NameXLOC_039643
Unique NameXLOC_039643
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_385:423267..427059+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039643 ID=XLOC_039643|Name=XLOC_039643|organism=Clytia hemisphaerica|type=gene|length=3793bp|location=Sequence derived from alignment at scaffold_385:423267..427059+ (Clytia hemisphaerica)
TAAAGTCAGGCTTAAGTTTGACATAATTTTAATctcatttcttttgtatt
ttctccAGACACACATATTAACCGAAAACAGAAAATACTTTTAATGTAAA
CAACAACAAGATAACGCATATATAAAAAAGCATATaaactaaattttcaa
aaaaacgaaAACGGCAAGGATCATGATGGTGAAGTTACAGAGAAATTTAT
CACAAGGCTCGTTTTACACTACCATTTTACTAATGTTGATCATTAGTACA
CAAACGATGAACGCAGAAAAGCCTTCAGCTGAGGTTAtcgaagaaataaa
aaagatcaTACTTCTAAAGATTGGCGTGGATAAACCGCCCCCACCCGACA
CATCAGAACGCCCGAACtttcaagaacaagttaaagcACAATCTATCAGA
ACGTGGCGACGAAATACACGATTTCAAGCTGAACATGAAGATAGAGCCTT
ATCTAAGATACAAGCCAAACCAATTAACAAAGGTATGTTATTATTAGTAC
CACCCCTTGGTTCAATGACCCTATAATGATATgtaaagtctccataactc
gacaaaatattcacaaatatgttcgagttaaggatatattcgagttatgg
agtaaggcaTTGTTGATCagttaactgaagggatcatAAAACTTAATCGA
GTCAACAGGAAAGTCGagttatagaagttcgagttaaagagattcACTGT
AGTATGTGGATATGAAAATAGACTTTCTAAACAAAAGATAGGAACCAAAA
ATGGAGTATAAATATGTTTTATCCCCATGAAATCTTTGGTCGGGGAAAAT
TGACCTGTAATTTCTCAAATGttttaataataaaattttcccCACTAact
ttcaatcattttttttctccccGATAAGTTAAATATATCCCGTAGCTTAA
GTGTGACTTGCTATTTTCGCTGCTATCATCCTTTCACTATTCCCTTCGTT
TCCAGAAAGAACTGAAGTTGAATCGTGCTCAGTCCCAGTACTCATGATGT
GAAACATACTGGTTTTTTACCAGTAGTTGTAAATCTAAGCTACAGAAAAA
CTGTTTAAAATTTGCGACTATTGGCTGAATATAATGAATAAAAAAGACAC
GGTGAGGGTTAGTGTCCAGGAATTTTAACGATTCAAACAGTATAACAATC
ACACAATTTAGCTGTGGTTCAAATTCTTTCACAGCATTTTTGTCAGTTTG
AGCTCCTTGACATGACAAAAGTTACATTAAAAGATTGCACTTTTTTTACG
AAAGTGTCAACCTGTCAAGAAATATTAAAgctatcaaaatattatttttg
atgaaatgGATCCGTTTAGTTTGGTCGTAAATCATAGAGTCTTGTCATAA
TTTATATACCGGTGTTCGAACCCTCAAAAGTCGATTTATTTGACCTTGAT
AAAGAGAAGTCTATACGGTTATATGCCTCGTGGTCGTACTATCCCTTCGG
CTGTCAATCATCTGTCAAGCAGGGTCGCTCCTTTAGATAGGTGCATAAAT
CAACTAAATAAGTTTTGTGAGATTTTAAAACTTGATAAAACGGTTCATTT
TTTGATCATTGTATATCCCTAAGTCCATTACCGACTTGTATCTGTGTTTT
CTGCAACTGAGACGGTTAGCTTCTAATTTGTCTAGATCATGACTCTCTGA
GGACGAGGGCGAAATCTGTACTTTTactgtcctcgattttgcggatCAAA
ACTGCggatttttccaaatcgctttaaAAGTGCTACTCATTaacatttaa
aataattttttttcataatttgtattttttagctggatttcgtgtgtttt
ctttcaaaagcgAGCAATTCTTTCAAAAAGGATACGCAATCAAGTCCGCA
AAATTAACGTTCATCCCTGGTAAAGATTTAACATCCAAAACAGGACCACA
ATCACAAATTGAAATACAACGTCGTAAAATCGTACGATACACAATCGACG
CGTTGTCAAAATTAACCGTCGTCGTCGATATCAAAGGTGACATTGATCTA
TGGAAGAAAAAACACGGCTCAAAAGCGGACTATCGATTAAAATTCAAATG
TTCTTCAAAAGTATGCATTGATTCAACTACCATACCATTTATAGATTTGG
AATATCGTAAAATAAGTACCAAAGTTAAGAAGAGTTCAAATCCTGGTCAA
ATATGCAGCCCTGGTGGATGTTGTCGAAAGACTGTAACAGTATCTATTAA
GGATCTCGGTTGGAGCGATTGGTTTTTCATGCCAGAAAGTTTTGACTATC
ATTACTGTGTAGGGACCTGCTCTAATATGCAGAATTCGTTATATTTCAGA
CTATTGAAAAGCTTAAATTCATCAACTTGTTGTGCGCCAACTGAACTTAC
GGGCATGCGCGCTTTGTATCGTATTAATAAACTAGTACATGATCGATATA
TTAAAAACTTGACACCTAAAGCATGTGCTTGTGGTGGTATTGCGGGTGTG
CGGTGAACTGAGTTGGGTTTGAGCGCCGCTTTGATTTGACACTCTGTGAT
TGGCTAAAGTTAAAAGTTGTAGATTTTGCAAAGAATACCAACCTAACGtt
gaaaattaaagaattgGATCATGGGCTTTTTGGTCGTAATACCTAATTTG
AGTATAATAAGTCACCATACTTGAAAGCAGCcgaacaacattgtttcaac
gtccatttCACGTCCGTGaaatccatataacgttagatgaacgttgaaaa
aacgttgccTACCCAGCTGGTGGTACAAGGTGCATTGTATTTTGCCAGTA
TAACGAAAAGGGTTTATGTATTTGGTATCCATCCTAAAAGGGATTGGAAC
CGGACCAGATTGTGTTACCTCAAACAATTAACGCAATTTCAAGATGACTT
CATCCAAAGACTATTTGTTGGTCTGAAGAAAAATATGATTGGacgattta
aaatttttttctagctGGGCTAGAGAGAAGAacttcttatttaaaaaatt
cttgatttaaaaaaaaaatcagactAACTGTTTCAAAATTCAACTACGAA
ATCCTTGTGGGCTTGGGAGTAGACCCTCCACAAGTTTTTCGGGTTTACTG
TTTGTGGTTTAGACTTTGACAGGtttagctttcttttttttgacactttt
ttttatttaactaaTGACTAATGACTAATACTTAGACCTGTCAAAACTAA
GTTttggttcaaaaattttagtttctttGTCTTGTAAAGCGTTGTCCGGA
CAATGAGTGCGTACATAGCTGAAACGGTTGTGACGAATCATACCCTAGAT
TTTCATTAATTCTGTCAAAATTTGTGGCTTCAAATGTACATAGAAACTCA
GACTCAAATTTGAACTCAAGTGGATTCAAGATTTCCGGGACCTTATGTAA
ATAATGAACAGCAGACCAGCATTGTTTCTTAAGCTGCTTTTCTGAGACAA
AAAATCTATAGTAGATTTATTTTACCGTGAAATCTTTACGGTAATTTTTT
TATACGAAGGGGCTGTTGGCTTCCACTGAAGGATTCTCGCTCCTTATATT
TATATTACCTgcagttttgtagaggtctgtgcgAGCGATTCAGACTAGAA
ATTTTTGGGGCTAAAACTTTAAGGGGTTGCTCGGTGAAATTTTCTAAAAG
ttcttaaaagatttttaatttgtGTTTTGTAGTTTTTTTACTAACAATTT
GTAGATATGAATATTAAGTAACATCTTTATGTAGGTAAAGCTAATTTTTT
TGATACTATTATTTTAGACACAGCTTTCTTCAAGAAGGCtataattttca
tgaaaaaactaaaatttacatttgcATTGACACACAAATCAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063260TCONS_00063260Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063260-proteinTCONS_00063260-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:423267..427059 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.43	0.44	0.11	0.05	0.52	0.56	16.76	17.22	10.73	11.43	7.68	5.69	3.37	3.69	13.1	15.21	3.36	2.65	9.21	6.19	0.51	0.44	4.74	5.68	8.46	15.49	67.54	61.15	2.9	1.63