XLOC_040336 (gene) - C. hemisphaerica

Overview


Name	XLOC_040336
Unique Name	XLOC_040336
Type	gene
Organism	Clytia hemisphaerica (Jellyfish)

Sequence

The following sequences are available for this feature:

gene from alignment at scaffold_411:16403..25122+

gene from alignment at scaffold_411:16403..25122+

Legend: gene

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_040336 ID=XLOC_040336|Name=XLOC_040336|organism=Clytia hemisphaerica|type=gene|length=8720bp|location=Sequence derived from alignment at scaffold_411:16403..25122+ (Clytia hemisphaerica)
CTCGGATTCAAAGTCGGGTTCAACCTGGAAATTAGTAAGGACCTCAAACG
ATGAACAAGTTGTAGCCGACTGTTAGACCTTAAGCAGGAAAAAAGAGCAG
ACACGAGCAGACAGCAGTAGTGAGGCTTGGCTTCTCCTCGTCAGATCCAG
ATTATCCATTTACATTAAGAAGAATATCATTATGTCACTCACAAGGAAAG
GTATATCACTATTCTTTTGTGTCTTCCAATAGTTTTGGATTtgaatattt
gaataaagacatgaaatacaccttttttgGCTTTGTTGTTGGTTTGCCTT
TCTGGGCTTTGTGTTGTGGGTTGGGACGTTATTGTTGGGAGAACGAACAG
TATTTCGAATAACTAGCTAATTACTCCAGCagaatatttttctaataatA
ACATCATACAATTGATTTGTATTTTACATACAACACAGCCTGACAGCTCT
GTTTAACTTAGATATATACAAGATATATAATATAGAGTCAGTTCGCCAGT
GCACGAACGAGCGTCTTTGAACtcgaaaaaaacaaccaaaaacaaacttc
tagagaacttcctttgtgcagcagaatcctcaaactattccttgcaatct
ctccaaaaattaaaataaacggagcactagatttttgtaaatatggcTGA
TCgcgagagaaaatgttttttataagaaaatttgcgcaagaagagttctg
aaaatgactttcctcttttaaaaaaaaaaaaacttttatcttctatcaca
caaaatttcattgaaacatgttagCTCATTAATTCAAAACCAATAGatag
aaacatatcaccagtagttgatataaaaaaggtccaaacaccatattcaa
aatgaagacagtgcaacgtcaaaacattcgaaagcgctggcgatctcaat
tcaaaaagaagacactacactgccgcgcttttcgatgagcaaaacttgaa
aaggaaaacaaaaaaatggacgacaagaaaatatttacaaaaataaacag
gttagtaaAACACTAAAGTTCTTATAAAAAAGACGCTTATTTAGTGAAAA
AGCGcgtggttttgaaaagttcaaatacccctgtatcatctcggaagaga
gttaaagtattacctgcgagcagagctctaattaattctttcaaaagatc
gttTGCAAACTGGTTCCTCGTTCGCGGACTGGGTTTGAATAGCGCTCCCT
TTAACgacttattattccaagaagaagctttcaaataaagtgaaaacaaa
ctgaaagaaggacttcaagcttgtttacgagatggtcaaaaaggatttat
gtaaaaaccaaaagtaagtgagaaaagtgaaaaataagtttACCGTTTGT
GCACTGGGCACCCCCATCTAATTTATCCTAATTTTGTATTGACCAGAGTA
ATTTTGTTTATAGTTGTTTTGTAGAACGCGACGCCGACGGCCTAttaaat
aacaaattactccacatactttacatcagtgtagacctaacttttcatac
aaaaattacgggaaacgcatgtttggactttgtaccctatgctgcacgtt
gctgcactcaagcactcaAGTCAAAGTCCCgaaaaggcgggacaaaaatc
agttttttgaagtttgcaaaaaaacgccacatagaagatctttcaaattc
agtatgtgaatagagcaataaaaaatacaactttttttgcaaaagttcta
ggaatgaaaataaagggataatgataattgaatacaatCCATTGATGAAC
Cgtggcactatcgtaaagctagaatcgttttgcgtactcttcgctttaag
aaaatgattgacagattgaagtttttcacccgcgcaggagttcgcggagc
gttctcggctcaatcctcggaccacgctaaaaatggtagactgagctgtg
atagatcatttcgatggaagttgttgggatgtttacaaggctcttgacag
aaaatcgtttgtgttattgtcaatgatgacagtgtggttattaattttgt
tagatctgacaaattgatgtttgtaagtgcactttatagtttggattccc
attgaagaatcataaaCTGGTTTTcctgttattagatgctgttttagagc
tttagagctacactgtaCATTACTTTTTTTCAGCCAATAAGAACGTGATA
AATTATTTTGTCACTAGGTTGTGGAGTaattaggggtcactcacaaatcg
attAATTAGGTTAGAAAAACGCTAATTGACGTTAGTGGGTGGATGGGTTA
AAGGTTGTTgacgttttttttcaaatccagAAACATCGATTTTCCATTCC
attttgtgaacaagtttagaaattatctctgtttcttttttttcaaatat
aaactatgcgagccgtagtgaagaaaatcaagatggctgacgaaacagcg
ATGAAGGCAGCTTTTCATCGATTTTCAGGGATTTCAGGTGTTTGACGTCA
TAGAGTGTAGGTGGGTGggtcagcttttaaaacgtcaatttacgtttttc
taacctaaaatcgatttgtgagtgaccccttaccTTATTACTACACAagt
attactagtcattttattaacacaaattgaaaagttttgtgttaataaaa
acccccttaattgaaaccacaatcatggtcaaaatctattgaaaaTTCAA
CTTATTTCCGCTTTTTTTTagatttggagttcgggcgagaaagtcgattt
tgggccatctctcaaatttaatcagatatttcaatttggctcgggtttat
agGCCTtcaggctatattatgagcctttttggaccatttttgaacttttg
gatcctcacatcataaggtcctaagtctttaGTCTtgtgttaaaactcta
cccttccaacctactttagaacacttacaaatcgattgtggttacaaaac
ttcccggtggatttcccttttttctcaaatattacgaccatgattgcagc
tgtggtgtccttgaaaaagcaaataaaatttgtgttaattttttgcatgt
tatttttaaggccgttgaatacttgcctaatAATATTAGTGTTATAAGGT
AGTTATTCAATAGGAAATCGAGCTCTCCAAACAAAACAACTATTGCATAG
GTTTTGCATATTCTCCTAGGCAGCGGTCACAAATAAGTTCTGTTTGCATA
AAAAGCGCTACGTAACTGCTTTTTGCGCTGTTGCAATATGCAAAATAATC
ACATTGCAGCTGGCGCAGGCTCGCGGGCTCGATAAGTCTTGTCGCCTGAA
CAAACCTATGCTCAGTCAGAGCGCATTTGCAGGATGTATTGAACAACAAG
GGAGAGTTACCTCAATCAAGATTCCAAGACAATTATATAACAGAAAAATT
GAAAGCTTGAAagcttgaaacaaaataaaacgtgcagtaACCAGCTAATC
AACCACAAAAGTTTGTCATTTAATCCTAAGGGAGTGCTTTGACTTGTTAG
GCCTTGATTACATGCTAAAGGTAGGGTGTAAACTGGAaccatgaaaaaat
actttttttggattttcaaaattgtcacaattttttatcaaaatttatca
tattgttAGACTTCTTGCGCAATTTTTAGGTCCATACGTCAAAAATCCAC
TGTTTGCCCCAGGGGTATCTGATTCGCGGTAGTAgtaaaaaacggcaaaa
atggcattttttgtccattttaagactataaaaggccaggaaatggtcaa
aatggtttctaaatgctgtcttgtactaatattcaacacaaaaagacaaa
aaaaccccagcgagatcgctcaatgtttcaatttcaggctaaaaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGGACCTcaaa
attgcgcaaaaagtcttacaatataataaattttgataaaaaattgtgac
aattttgaaactctaaaattcaaaatccagTTTACACCCTACTAAAGGAA
AAATAATTCTACACATGTTAAATGGAATGGGTTAGTGTTTGAGGTCTAGC
AAAATATTTCCCGGAAATAGCCTATCTGGTacctaccgtaagttggtcta
atatcgacattccccttctaattttgacacccttttttaaagataggaat
aatCAGAATGTTGGGatcgctgatggaaactatttttctttacttagcAA
TCatagaagaaaaatattttgtctatatATAAGTGATCcccaaccttcct
attattcctatctctaaagaaaggTGTCAGAATTGGAAGAgggattagac
caacttacagtatagTATGCGGATCTAGGTAGGTGTCTTCTCCCCTGTCT
TGTacatctttttcttgggaagatgttcttcaaattagttttgaaaTTAG
CTTGGTTCAAGTTCTTTCAATTATGAGACCCCccagattttttccaaatc
catacattcacgcaatgtttttcgAAAGTTATAGTTATACAATTTCTGCT
CACATAAAGCCTTCCAATCCATGAATTCAcgcaactttttaaaaatctta
acaAATTCACAAGTAATTCTGAGTAATTTGTAATAGTTCTTTaatgttat
aattttatttaaaagcaCCAGTTTATTTGTTCctaaatccctttagaagt
tttgcggggCTATCCTTTTGCTTGCAAGTCAAGTAAACAATAAAGCAGTT
TCACAGCATTAATTTTTGATACGCAATTCTGCGGAaccctagtgtgacta
actgacattATGATAAGAATTAGACACATGGAAATTGATCTACTATCTGG
CTATTTTGTGAGTCATTGCGTAGTGTTTTAATCGCTGGAGTCATAATGGT
ATTGCCCCTAGCATAAAGTCTATACCttttttacttttgatataagcagg
tcagaatcactgatagacaaaagatttttcctctgaGTGCTCAGCAAGGA
ATTATAGTTCCTATCAGCAATTCTGACCGCGTTTTATTCCAAACTCTAAg
tagggtgtcgaaattagatgaGGGGtgttgatattagaccaacttatggt
actAATGActccaaaaatctaaaaaaaggtAAATAACCTGACAGATGTCT
CAGTGTATGaccttaactttttgaatttttccatttATTAAAGAAATccc
agtttgcagagtgtggCACATTTGCTCGAGATCTCGAGTGCACAACACGG
GAAAAGTCGAGTgcaggtgcaaaatttgaggttttcaggtgcaagtgCAG
ACGGTTTTTTAACCCCAAGTGCAGAGTTCCACTATTTTCTTCTCAAGTGC
AACTAACTTTAGCAATGTTTTGCCTTTGTTGGGCCAATTTCCGAGGAGGT
GCACCTTTTCCGgacgccaaaatttatcaggtgcgCTCTTCCAGTGCAGA
ACTTGGTATTTCCGAATTTTTCCTCGAGTGCAGCCTTACCATACTCTGCA
AACTAAATCTAGTTCTGTCTTTACAAAGTGTCATTAGCTACACTTGTCTT
TAAATATATACAATACAACCCATTCTTTGTNGACAGATGTCTCAGTGTAT
GACCtgaactttttcaatttttccattTATTAAAGAAATCTAGTTCTGCC
TTTACAAAGTGTCATTAGCTACACTTGTCTTTAAATATATACAATACAAC
CCATTCTTTGTCTAAAAATTATCATCGTTTTTTATTTCTAGATTGTAAAC
AAGTATTGGTATTACTGGAGGATTacaacaacaaaatttcaaactcagat
GATGATGAACTGAAgcaatcatttcaaaaaattattaatgTCTTAAAAAG
TCAGTATTTTGGTGCTCTTCTAGGTAAATATGATTCGAATAttcgtttta
ttttgatttatctAAGACTTTTAATACTTTAGTAAGAAATTACCTTCCAT
GACATTTGCATTTTATATGCAAGTTTTCAGGCAgtaattatatgactgat
tGAAAAGTTCACCCAAGTGGCTTGGGTGAAGGCATAATTGAGGGAAGTAT
GATGGTTtgattccaattttttttggtgTGATGGCTGGTAGGGACAAAAT
TTGAGGACATTGTTTGATTTGGGCTATCTTTAATTTTNGACAGATGTCTC
AGTGTATGACCtgaactttttcaatttttccattTATTAAAGAAATCTAG
TTCTGCCTTTACAAAGTGTCATTAGCTACACTTGTCTTTAAATATATACA
ATACAACCCATTCTTTGTCTAAAAATTATCATCGTTTTTTATTTCTAGAT
TGTAAACAAGTATTGGTATTACTGGAGGATTacaacaacaaaatttcaaa
ctcagatGATGATGAACTGAAgcaatcatttcaaaaaattattaatgTCT
TAAAAAGTCAGTACTTTGGTGCTCTTCTAGGTAAATATGATTCGAATATT
CGTTTTATTTTGACTTATCTAAGACTTAGTATTAAAAGTAGTAAGAAATT
ACCTTCCATGACATTTGCATTTTATATGCAAGTTTTCAGGCAgtaattat
atgactgattGAAAAGTTCACCCAAGTGGCTTGGGTGAAGGCATAATTGA
GGGAAGTATGATGGTTtgattccaattttttttggtgTGATGGCTGGTAG
GGACAAAATTTGAGGACATTGTTTGATTTGGGctatctttaatttttttg
tatgaTAAAGGGTAATCCAAAATTACCCTCCAAACCCAAACCTGGTATTA
CTAACTAAAAATCACTTCACCTCAACGTcccattttttaaatctagatAT
TCAGGAGTATTATGAGGAGATTTTGAAAGATGCCCATGAATCACCGGAGC
AAGTGGAACGAGAGGCGCAAGCACTTGCCAACAAATGGAATATCAACTCC
TCTGATTGCTGAAACTTGCGGAAACCATTTCTAAGATCATtactagattt
tgtaattttttgtaaaaatcaaccagaattacTAATTTTTACTAATGTTG
AATCTAGCTACTAATAATCATTCAAGTGAGATTCTCTCAATAATGCAGTA
ATATCTGAGAATGTTATGAAATAACTTTTTATACACAGAATCTAAATGGA
TTTTACCTTTTTATTTAACATTCTTTTTTTAagttgtaaatatttttcaa
tcaataTTTCTAACATATGC

Gene-mRNA-Prot

The following transcript feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
TCONS_00064331	TCONS_00064331	Clytia hemisphaerica	transcript
TCONS_00064332	TCONS_00064332	Clytia hemisphaerica	transcript

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
TCONS_00064332-protein	TCONS_00064332-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_411	supercontig	scaffold_411:16403..25122 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.56	23.02	13.74	10.99	149.26	122.02	91.41	107.14	103.25	71.23	72.04	86.05	30.43	29.73	25.94	25.93	18.43	20.05	16.16	15.48	16.22	15.75	36.42	32.07	24.53	34.68	19.58	13.91	19.49	20.02

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XLOC_040336 (gene) - C. hemisphaerica