XLOC_041401 (gene) - C. hemisphaerica

Overview
NameXLOC_041401
Unique NameXLOC_041401
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_451:208117..215786+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041401 ID=XLOC_041401|Name=XLOC_041401|organism=Clytia hemisphaerica|type=gene|length=7670bp|location=Sequence derived from alignment at scaffold_451:208117..215786+ (Clytia hemisphaerica)
TTTGTAACAAACTTCTACTGTTCTATCACTCTTGTCTATGCGTGTCTTGa
aactcaaattttgccaaaatatttttcatagccCGTCATAAGTGGTGAAA
AATGATGTTGTTGACAAAATTTAGAGTGAGTGCATTACagaaacactgtt
tttaagaaGTTAGATAAACTTTCATTTTACTGACTGGAAGACATATTAGA
AAAAGGGAAATCACAAAAATGTTTGCTGTGTGATTACTGTCTTATCggaa
aaaaaagttacaaatcaCGATGAAGATTACGCTTTTACCGTTTCAAATTT
ACTTGCATTTTCTATTAGTTTTGAAAACGACATCAGATCCTAGTATAGTG
CGGATTCAAAGAACACTTATCAGTCGAGATCCATCAGCATCttacaaact
tttttataactCACAAGATACTTTTGATAATCCTTACAAGAACAGaagat
tttgtaaaagtttaAATGGAAGATGTGCTTCAGTGTATTGTGGGAAGTGC
GAATGTAAAAATACAGATGACACCTTTTTATCTTACAACCATGGTTGTTT
GGTGAAAAACGATTTATATCAAGCTACCAATGGTATGAATATTCATTTCT
CATCCAATAAATTATGACACCTCTGTTTCAATCCTCccttacccagctgg
cacaaaacgttgttttaacgttcatctaacgttatattgacgttgtgaac
gttaaacgttgcaacaacgttgtgtgtcagctggatATATAGATATTATG
GATCATATGCAGTTAACAGTGTCCATGGTCAAATTGTGGACCAGTGGGTT
TCACTTAAGTCCAtttgtacacccctgtctcagtgccggcggtagaactt
tttccctcaatGGGGACGAagatttctatcaaaatgccaagggggataga
aaatctattgtttccagctcgaaaattccagtggggatggttttggagtg
caattttttacattcagttttcaatggggataaaatcNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNgttgaaattgtaggatattttttccaccggggacgat
tttttggcctatttttccaccggggtggggggtccaccgggtctgtgaca
caggggtgtagttGTAATCAAAGTCTGTAATTTTTGAGCGATTTCTAATT
CTGAAGACTGGAATATCTCAGTTTGGATTAAAATCTAACACAATTACAAA
AGGGTTATAAAATCTAAAGATTTCAGCTGAAAAGATAAGCCATCAGGTTT
AGTTTTAGACCACATATCTTTTAgagttttaaagtatttttctaATCGGG
GATGATATTTCAGTTCAGTTTCCTAGCGAAAAAGGTTCAACATGATGTAC
taaaaaaccccaaaaatgtgtacgaagaaaattttttgtttaaattaaAG
CTGATAGGTCCTATTCTAAGGTCCTGAGTAGTAGTGTGGAGGAGGGTCCG
GATAACGAGGtccgaaatattttcaaaatctgataaaaacggGGGAGGGG
GGTTCCGGGTAAAAGGGAGGGGTCCAAAATAGTACCTCTAAACCCCCCCG
AAATAAGGTAATTATACATGGTTACTTAGAGCAATTGCACGTGTGATAGC
ggaaagtatttcaaaaataaataaattggaGGATATTAATAAGAACAGAA
GTGGGAGGTTCtccaaaaaattctcgaaaattAATAATCAGATGGAAATG
TTGATTCAAGACCTTAGAGAACTTTAACCTTTATCTTTATTGTTTTAGGT
ACTGACAATTTAGAGTATCACAAATTTGCTGCCATCATACCTACTGCCAC
AACAGCTactttttcacaaaacaaaTGCGTCTATCTCTTCATTCCTCCAC
TCCTTCAACAACATCTTCAGTTTTGTTCGGCTGCATCGATATGGAAAAAT
AATCCATTGAATGGAAATATGGAATTGTATAGTGATCAAACAGCCGGCAA
TATCCTCAGAGCTAATCATGACGATAAAGGAGTTTGTATTACGGTGAGAC
TTTgtgatacactttttttataagaacaattttataagaactatgaggct
caaaatcgccaaaaataagaacaatttaagaacaatgctgagcctgaaat
tactcaaattcAATGAATTGTAGGGgttaaaatagtaaatattgGATTTA
ACGCCTAAAATTCCTCAATTACAccttataaataagaacaggataagaac
aatttgaggctcaaagtgacaaaaaaaataagaacagcttagcctcagca
aaattttattgtttcttataaaaaagtgtactaGAGCCCTATTTCATTTT
AAGTTAGTATATGCGTTAAATCTCTTCAATTTATAGTTCTCGTAGGAACA
GATTTCACTGTCTAGTCAAATTTTATCTGCAAATTTGATGTCcttaaaat
caatattttcaaatattttagtgTCAAGCTTTCAACTGTTTTGGACTTGA
TAGTTTGAGAGGTTCAGTTATCAAGTTAGATTTGCATTGTCAAAGCATAT
ATGGGAGTAAAGTTACGCAAACAAATGCTTGCTTTGTTTTCAAAATGGAA
GGGAGTCGATCTTTGTTATGTAAGTAATTTCTAAGTTAATGATATTCCCC
ATAGCGAACCCCGATTACACCATCAAGTCAAAAATTCCTTTATTGATCAC
CcattacattttttgaaaccaTAAAATCAAACCATAACGCCATCACGCCC
AAGGTCCTATCATTCCATTAGCTGAACTGCTTAACGCCTTGATAAAAGAT
GGTCAGAATAAGTTCTGCCAAGTTTATCTCAAAGATTTTAAATATCGTTT
GTACGCAGCATGTAGAAAGCgttcttttaaacaaaatatttcaataatgc
cccggctggcacacaacgttgtttcaacgtttatttaacgttcacaacgt
ccatataacgttaggtgaacgttgaaaaaacgttgtgtgccagctggatt
aaggctttttcaaatattttgataacaAATCTAAGAGTATAATTTAATTT
CATaatagaaaataattttaatgacaattatttgttttaaaacttaatCT
TTTCCAGACAGCTACAATTCTACTACATCAGCTCCTCAAACTGGGGcaac
atcaacaacaacaacaaccacaacGTCAACAACGACAAAGACGAGTACAT
CAACAGCACCATCGACCACAGATACAACTCCTCCACATACAACACCATTT
ATAACATCTCATCGGCCAGCAACAACTGTCAAACACACTACCAATTCTCC
CACAACAGCTGGAAAACCTTTCACGATAGCCACGATGACGACACACGAAT
CAATACAAACCACTCGCGAAACAGAACCTCTAATTACAGAACCCATCACT
TCAACACAGGtaagaagatgaaaaaagtaCAAGTTGCAATGACTGTTCCT
GCAAGctttattttaaaggttttatttttacataagtgttcccgtttatT
ATCAGACACACattttatatcaggacagtgtctgcctatttttctgttat
gctgatataaagCAAAAATTGAACGGtattcttttcctctttctgatcaa
tcttgccccacatccgtgtcaattcattGTGAAAAGCTTGTAGactaaaa
ttgatgagtaagcaaacgataacacttttatttaagaacaaaacctttaa
tatatTGTATTATTTCATAGGAATATACACTGAAAATcggcaaaaaataa
ataaaagaatatgCTTAGNacaaaacctttaataagaATATATTTCATAG
GAATATACACTAAAAATGCTTAGATAACATCAGCATCACGAGATTTGACC
TTTAAACTTAAGAATGCcgtttttactttaaattgccaattatacCCTGG
TAAAGGCAAAAAAACATACATCGTAAATTTTATAAATTGAACGGAGGTTG
GAAACATCATTACATGTTAGAAATTTCGGCCAGGGCTGTATTCaaggtac
tttaatgggataaattttcgcggggattaaatttcgcggttgagctcatc
cgcgaaattttaagatttcgcgggattaattttcgcggatgagggatttc
ctgatttttcgcggggatttaatttcgcggattggggtacaaattaaaat
ttttgaaaagggtcaaaacattgaaataaaaattttccaggaaatttaag
aatttgtttttcaagtaataagagggtgttttggaatagggcgaggagat
atgtattacaaagAACACTGTTTGCAAATGCTGCTGCCAAAACAAAGCGT
CCGAGTAAACCAGAAAACCCATCTGTTATCCCGAAGACATCTAATGGGCC
TATTTTGTTAGATTAGGAAGTTTTTTAACTTGTTAAAAGAAGCAAAAGAG
AGATAAATAAAATGACTTAAAATTGTTGTTTCGTTATTTTCACTCTTTCt
tatcattgaaaataaattcttttgatttccgttttccctccttttcttac
atatccttttaaatgtttaatttcaagccagttggattaccctcttgcat
tgaaaagcttttaacaataaGCGATCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgataaaaa
tagaaatttcgcggattgcaaaaaaaattcaaatttttcgcggaaactaa
ttttcgcggatgggcctttttcagaTTTCCAatggaacttattttcgcgg
atgacacccaaatccgcgaaatccgcgaaaattaatccccgcgaaaattt
atcccattaagaTTTTGGGTTATAGCTTTAAGAATATCATAAAAATACTT
TAAGcatgatttttctaaaaagttaaAGATACCCATGGTGAAAAGTGATA
AAAACCACTTATACAAAGAACTTAGTAGTACTAATTAACATGCgacaaaa
attatataaaatattTCTGATTGTTTTTCATAGAAAACTTATGCTGGAAA
CCCATCGAAAATCAAACAAGAGGAGAAACCAAATACATTGCTGTATATAA
CAGTCCCGTGTGTCGTTGCGCTTCTTGCcattgtcgttgttgttgttttc
attAACCGAAGGAGAAGATCAAGGTAatactagactggagtcgtttataa
tacgCACAGcacaccattgagtttaaagcccgaaggtcTAGAGTAGAATC
TGTAACCTTTCCCAGGTAAGAAAAAgagaagccacttatttcccatccag
aaagCGCCTAGAGCGCACCGCGATCATGaggacggattgtatctagcggt
tcctttgtttttgaggactgtatttttttattttgtgtaaaATCCACGTG
TATGACTTCTGGATGGCAactaagtggtttcatttcccatgcatccagga
gtctcgataAACTAGTcctcgggcttggaagtcaatgtgCAATACATTAA
TATTGTTATCATATGATAATACAATAATCGTAATAGGATGATATCAGTTT
GTattatccaaattttttttcttgttctgCTCGGTTCTGcttatgtctga
attagttaCTTTCTCCTAAAATGATCGattttatgtatcggaggatatcg
tgGGCGACAGTATGTGAAGTCGACTCAAAACAAAGTTGATTGTTGATgaa
cggctctatatcgcctttgctcacccaAACAGAGGGCGGtactttggtgt
ttttaccaTCTTAAGCAAAGTGGACGGCGGTTTTAatgacatgtcaactt
tgctttatatcgtctccttcgatttatcaaatacataaactctctATTAT
TCTAGGAAAACTGGAGGTGGTGATGTGTCTTGGCATCATAATTCAAGCAC
ATCTTCAAGAGCGCGAATAAATGCACCAGAAAACCAAAGTCATTACgaaa
ttgaagatgaagatACTTTGAGAAATGGAAACCGATATAATACGTATCCT
AATGATTTAGGACACACTGTAAGTTACGAAGTCAATTTAATCAAATCCAC
AATGAACAGATCCTTGTTTTGAAACAGTTTTAAGAAAGACATTACGTAAT
AGTGAACTTATTTTTCGCTAAAATACTACTATAGGTTATTTAACTCAATT
TGTTAATCAATACGCCACTTTCCTTGAAGATGGTGACTGAGAAAGGTTTG
AGCCCCGGTTTGTGCCCCGGTGCTTTCTACTGAAATTGTATTGAAATCTG
TTCTTCTtagaggaggaggaggaggaggaggaggaggaggaggaggagNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggaggag
gaggaggagtaggaggaggaggaggactGTCAGCATTTCAGTGTGTTAAG
CCAATTTGATAATGTTTTGGCCAGTAGCCATCAATTGTAGTAATGAAAGA
TGTGGGTTAAATTTTAAGCTAAACTCTTGGCTTGGGCTACGTAGAACTGC
TTCGATGATTATCTCTGATTATCTCTTTTCTTACACATTTTTGTAGAACG
GAGGATATCGAGACAGCAACATTTACCAAGATCCAAATGCCGTGCTGACA
AGAGAAAACGATTTGTATGGACTATCAAGCTCACCAAAGAATGCTTATGA
TGAACCAAATTTGGTAAATTTACCACCAGAAAATTCAGACAATGATTATA
AAAACTTGACTTTACCGTATAAGGAAAGTTATTACGAAGGCATAGGCGGG
GGTTCCTCAAATCAAAGAGGAAGTACCTTGAAGAGGGCGCAGAATGATTA
TTATAATATGTGATAGTCTAAAATGACTGGTCTTGAGCATTTGTGGTAta
tatatttaaaatgaaaaatctagatgattacaccttttcgactgtagttG
CCAATCACCACGCGAGTATTCTTGTGTCCGTTTTACCAAcctaaaaccat
cccagtcATTTTTTCGCActtatagacaatagaaaaaggtgtaaaataaG
TGGATTGAGTTTAGGGGAGTAATTAAATAAAAGAGTGGCACGCGCCTAAc
agcgcgactacggtcgaaaaggtgttttGGAATGTAATTGTACCGGGCAA
CTCAcaaatttttggatattctGAAAACCCAATAACGATCAAAGTTTTGT
TTGAGCCTAATAAATTTTAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00066128TCONS_00066128Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00066128-proteinTCONS_00066128-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:208117..215786 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.98	1.34	2.09	1.3	0.19	0.06	6.15	6.34	10.45	17.1	21.06	9.51	14.41	15.02	19.45	21.61	12.15	13.93	14.2	12.8	11.06	10.24	10.83	11.42	20.05	21.69	3.07	3.64	65.06	53.37