XLOC_041555 (gene) - C. hemisphaerica

Overview
NameXLOC_041555
Unique NameXLOC_041555
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_455:2630..11314+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041555 ID=XLOC_041555|Name=XLOC_041555|organism=Clytia hemisphaerica|type=gene|length=8685bp|location=Sequence derived from alignment at scaffold_455:2630..11314+ (Clytia hemisphaerica)
CTCGGGCCTTATAATGTTTACATCTTTTCCGTCTAGATAGGGCTTAATTG
AAAACGCGTTTTGCCGAATCTACATTTGGAAAACGCGTTTTTTGTTCAGG
AAGCGCTCGCACTCGCAGGCAAGAAGATTCAACCAAGGCCAAAGAAAGCC
AAGAGTGaggaaatcaaagaaaatcaacatcattttaatttaaatcGAGA
AGAAAAGCAACACAAGGGTATCGAAGACGATGATTTAGATTGAGAATTTA
ACCTTACAAATTCATAAGGAGCGTTTGTTACTCAACGTTGAATCAACAAA
ACAACTTTGTCTCGTCTGAGAAGctgtcaagcaaaaaaaaagttttttaa
gcaTATTGTTGTTTTCTCTTGACTATTATCACCCAAATGTCTACAATGGC
AACATTTAAAGGCCCACAAGAGGTAAGAGCTACCTTTATCATGCAAGATT
ATGATTTTATAAAGCTCAATTCATGATGGAAAACTCATCAGTTTAGTGCT
GTGTGTGGGTAGCATTAGCTAGCATCATGCTAAATGCTGCATTAGCATGT
AGATTGTAGTTGCCCATTGTCACCCAAATGTCTAGAATGGAAACATTTAA
AGGCCCACAAAAAGTGTGATCTACCTTTAACCTGCAAAGTTATGATTTTA
TAgctagggtgcgcactcgtcgggattttttgcgcggaacgaggaagaat
ttacaaaaatgaacttcaatgcattaccgtgaaaaagggtaacttgcatc
agtggaggctaacatgcatataccCCAATTCACAGACTTGTCTGGTCATG
GTTTTCTCACCCTTGtatatttaagaacatttaagaaaACATGTAATTAA
TTGAGGAAAGATTAATATAATTACCATAAATTGCGTTTCCCAAATGACCT
CACTCTTACACGCTTCNctcagggaaacaagtaaaaaaagctgcatccag
gtatctattttctttccaaagatattcatgtttttcgacatcaaggtgaa
aacgcgatttagcgctgaccacggcacagGAAAATTCCTTACCCACATTG
agacaaatggctgtcgctattgagctggttcatcttttcaatcccggttt
ttttagtaaacccagggtaagattaggctacaatctatcacaaactgctt
tatttcaaaatctacaggccgtacctggaatttcgaaaaataagaagaaa
ttgcaattttttaacaagattgcagattttttcatttaagcaccatacac
catctgaaagctgaggatttcagctttctagtggtaaaatttgtttttag
ctatcatttccagctcattagcgataagctaaagtttaacagtcatcggg
ccgattttcagaccgcaccagcaaaactccccacacccagccacacggaa
gactagatttcatccgccatttttggcgcgattttggtgcttccgaaaat
ttatttcttgctggcgtggtgtaaggaggcgattctttgaaaaggtgatt
tttttgtgatctgaaaatggaataactttagGAACacttaaccaattcta
ataaatgatccctcatttttctcataaaggtaaggactttcaaataaaat
tagtttggtttctaaaaattgaggggaaaattttggcctgtccaccctat
tATAGCCCAATTCATGATGGAAACTCATCAGCAGAGTACTACCGCCATAT
CATACATAGTCAAATCATaaacattgggccattccagcagaatttgtctg
taacagggggggcgaacgacacaggatttccaaaGGCAAaggttttcacc
aaaattcaaaatttccaaggtgagagaagaaaatgtataaatttccaagg
caattgaactaaaaaagacaaaatagatATAGAGTGGAATtcccgatgca
ttttgcaaaagtacatagattttcatcggaatttccgaccaccactggaa
aagataaattatttccgaggctagaaaaaattaataaatgcacgtcgtcc
gacgggggtatacaaatattttctggaatggcTCATTGACTTTTGGTAAT
ATTATGTTGTTTTAGctagagtaccctgcccagttggcgaccgaaattAC
GGGAAAGATGCACTGCaaaaagggattcatgaaaaaataacctggcgctt
tttaatgaaaataaacattctcaaaaactatgagaaaNcttctaaaggga
ttcatgaaaaaataacctggcgctttttaatgaaaattaacattctcaaa
aactatgagaaactGCCTAAAATTTAAGACATAcagtagatgaaaaaatt
tgagccaagtcAACATTGAAAACttatttgaagatcaacttcccaagaaa
aagatctacgggggagacggaacccacctagatcggCGCACTACCgaata
ggctatttcccggaaattttgccggacctcaaacactgactcatttacat
gtgcggaatcatttttactttagcgtatatagggccttaaaaatcgaagc
gctgtctcgggaattgaatgacaaattttggttggttgattttggctgct
gcacgttttattttgtttcaaactttcaagtttNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcaaaa
aatcattaaaaacagcaatcacgctataaataagacaaaatgacaaaaac
acaatttcattgtctttttgattcttttttctccTATCTTATATTTTTGC
CAACGGTTTGTCCATCTTATTTACACGtcatgaatattttcaaaaccagc
aaactcaatgcagacccaagttctttgagcaactagttgaggaatggtga
tttttttttaaattttctcacgTAACACAGCacacctctcttggagattt
ccaaaaaaaattttcagccttaccaaaaatatttatccacATGGGAGTAG
CTtgtcttaccatattcttaaattccgtaACAAGTTTTGATGgacacagt
tgcattttttggtatttttttgtgTAAAGAAGGTGAGtgccaagagaaaa
gtttgctcgctgtttttaatgattttttgaaatttcgacattaaaaaaaa
gtcagttttttttaaataattattgaattactttttcaaacctaatgtat
tatatctcaaaattcaagttagagcatcctctatgtgataaaaaaagaat
gaacaaaaaatttaaatcctgaagctcacaatatctcgacaaagttgtat
acttttttttggtgcacccggtatatatatGCTGGCTAAATCGATCTAGc
cagccagggtgcagtatgtagtgctgacgagtcctaataaggacgaaatg
catatgctgctctgccacccacatatcctgagtgaatatagttggacaga
aattcttatttcttcacatatatatataCACATAATTCCACACATGTCAG
TTATACTAGCGTCCTGCAAATCAAAGAATAATGCTGAGAAAGCCTATAAT
GTTTACTTGACtctctttttaatgaaataacattttcataaactatgaga
aattgcccaAATTTTGAgccgaagaagaaaaaattttaaccAAGCTAACC
TTGAAAACTTATTTGAAGAACaatttcccaagaaaaagatctagggGGGG
GCCACCACCCCTCTCCTGTCTAACACTAGAATAGCACAACCCACAGTATG
GCCCAAATTTTTTCAGGccacttgaatttgaaaagtccTGAACTGGCCCA
GGTATGTTCaggcaaaaaaagttttgatatttttggccaGAACATTTTGG
CATCATTTTCGGGTATGTTCGGGCCATACTGTGCCTCCTAGAATAGTAGA
TAATTTTTCAAGGGTCTTAATAAGGGTATTTTAAAAGTAATAACACTAGT
AGGGGGTCATTATTGGGTAATCCAGacaaaagctgaaaaaaagctttttt
tcttaCAAGAGCTTTAAGGCGCTCAAAATATCAATTATGATTTGTTACTG
ATAAACAAAACGTCCAATCAATGttttctgtgtcgagtttgagtATTTTA
CATCGCTTTGAGACCAGGTTTTTGTATAGTTGTTTTGGGGAATGCaacgg
tcttttgaataactaattactccacagcaTTACCTAGAGCtgcctagaga
caagataatttatcacatTTTTATTGGCTGAGAGAGAGAAAGTAATGTAT
GTAGAGTAATGAGTTATTCAAAAGACAGTCGCATTCACCAAAACATCTAT
TGactgacagttagtcacactaggaaatcaagctttcagaaaaaacaaca
tcagtcatctacaggatgtatttgcaacattaaggatgagagttacctga
atcaagttcgcaagacacataattaaaaacttgaaagtttgaaacaaaat
aaaacgtgcagcagccaaaataaccaaccaaaatttgtcattcaattccc
aagacagcgcttcgatttttataCGCTTGTTTATATGCTAAAGTAAAagc
aattccgcacatgtaaatgggtcagtgtttgaggtccgttaaaatttcca
ggaaatagcctatccggtagtgcgcggatctaggtgggttccgcctcccc
cgtagatctttttcttgggaagttgatcttcaaattagttctcaaggNac
gtgcagcagccaaaataaccaaccaaaatttgtcattcaattcccaagac
agcgcttcgatttttataCGCTTGTTTATATGCTAAAGTAAAagcaattc
cgcacatgtaaatgggtcagtgtttgaggtccggcaaaatttccaagaaa
tagcctatccggtagtgcgcggatctaggtgggttccgcctcccccgtag
atctttttcttgggaagttgatcttcaaattagttctcaaggttggctgA
TTTtctcatctatggctcaaattttaagcaatttctcataatttttgaga
atgttaatttcatcaaaaagtgccgggttattttttcatgaatcccttta
taAGTTTTgcagtgcatttttttgcttgaaagtcagctaaacgatatagc
gcttttgcagcattaatctttgatacgcattttggcgggacgctagtgtg
actaactgactgaATGGTATTACCATAAATTTGTCtgatgtcaacatccc
tctttcaaatctgacacccttctttagagataggaatactAGGAAGATCT
GAATCACTGATAGATAAAAGGTTGATTCATCTCTGATTACCAAGCAAAGG
AATGTAGTTTCCATCAGCAAATCCAACTGACCTATTATTCCCAGCTATAA
AGAAGGTTGTCAAAAATATGAcggatgtcaatattagaccaacCAACAGT
GACTGGAGAAAATCTATAAATTGAGCGCCTTGTTGAAAAAAGTTCGGTTA
CTTTTGGTTGAAGTCATTGTTCATGCAAGAGGGTGTATAGGGAGGGATAT
GGCGAAGCTGTTGAGAGAAATGGTAAAAAAGTTTGGAATCGTTTtggaat
ttcaagaattttggtggaaaaaaatctggaaatgcGCTTAACCAAACAGA
ATTTCTTCAACGTTgaagtttttttctaaaactggAATATTTTCTTCTGA
TAATCCCTAGATTCTGGGAGAGTTGTCAGCATTTTTTCGTGTGGCAAGGT
GTGATAGGAAAAAATCAGGAAGGTTTCAAAGTTTAAATGGTTTAAGAGCT
GAAGCCAGGGGATCAGCAGTAGaagaattttaaataaaaggccattccag
aatttgtcagTTTATGGTTAGGAAAAGGGCAGGAAAATTATTCAGAAATG
TGAAAATAAAGTTTATTTACTTTCTTTTCTAGTTGCCAGAAGCAGAACGC
TTCAAACAGAAGTTCCCACAAGGAGCACCAAGGCAGTCTGATTTTCTAAG
AAAACGCTTACAAGGCAAAGGAGGGGTAAGAAATCTGCTGCtgcttgaaa
aattgaagtTAGATTCATCTATGTTTTTAAGTTCAGGCGTATTTTCGTCG
GTgataaaaaagggaaaaaacaggcttaaaaggttttgtttttaaataag
agtgatatcgtttgcttactcatcaattttaattcacaagctttttcaca
ttggattgacacggatgtgcagcaatattggtcagaaaatggaaaagaaa
agcatttttttgcttatatcagcacaatttaacaatagaaagacactgtc
cttatatgaaatatgtgtctgatatgaaacaggaataCTTATGtgaaaat
gaaacctttaaagATAATCATGATTGTAAAACTAGTTTGGAATCTAGTAA
GAAAATTTGAGTCTGTGAGTCTCACGCTCATAGTTGGCTCAAAGCTAAGA
ATTACCTTTTCTCTACACATCTCTAACTGATATATTTGGGAGGGAATCAA
AATAAGGTATTTTATAGTCCTTTTCGAAGAACTGGGTTTGTAATATTTAT
TGTGTTATCTTTTCCAGGCAAAGTATTTTGATTCTGGGGATTACAACATG
GCCAAGAGCACTCATGGTAGGAATGTTCCAACTGGGAAAGCCATTCCAAC
ACCTGAAAATTTACCTCAAAGGAAAATCTCCTCTACCAAACAGAGTAATC
TGATAGAAGGCGGCACGAGTCCCCCGCAGAGCGCTCTACCAGAGGAGAAA
GCTGTGACTGAAGGTGAGCAgcataaatcaaaacaacatatCACTGAACA
AGAATAATGTTTATATTTACCCCCAATTAATATTTTTAGCCAGAAAAGTT
GTAGTCACTTGACTTGAACTTATTAAGTTTATTAGGAATGGAtccatttt
tattttgttccaTTTCTCACCTTAACACTGTACATAGCTCATATCTGTAG
ATAGGAATTTGATCTTCATTGTTGGGTCAAGCTTCTGAATTCCTTTCTGA
AGCTTCTTCTAGACCTATGATTGGGCTATAGTTTTACCTACTTTTTAAAA
AACACTTTCCTCTGATACCCCCCACCGTCAATATTTTGTTAAAGGGCTTC
TTTCCTTACGATTTTATCTCTGTTGATGTGAAAACAACCTTTTTTTTACA
CAATCATAAGCAATTTAAATCTACCTTGATATGCCAAATCCTTGCCCCTT
GCCCCTTCCCCCTCACGCTCTATATTATTCCATATCACGTATAAATGAAC
TCTGGTTATGCCCATATTGTTTCTGTAGACTACACCTGTTATCATCGTTT
TATGTagtaacttttttgtttatgttttatttttttggtaaaaccGAAAA
GTACTATTTTTGTTCGCCATTTATTTTGACACTATCAAAAGCTACACTTA
TTTGTTCAGTCCAAGATCTCGGCTTTTTCAAACAAAGGTTGATTCTGAGA
ATGGTATTGGATTTAGTCTTGaccattttctttttaatgacaatgagata
ttttgatattatttcaACAGTTTTTTGAATCAGTATCTTTTCATCTTTAA
ATGTCAGGAATTATTGGAAGTGGTAAATTATTATACTGGGTGCgccataa
aaaaattgacgttttcgAGCACATCTGGacgtaacttttttattcaattg
agtataacttttgatctaatgaatcgaatttaataaatgacccatcaaaa
tttaagtccatctttcttctttccgaaggaataggaatggttcctttaaa
attttagatctcgagaaaatcagttttataTAACGAGAGAAAtctttttg
tggcgcacccggtatataaacCCCTCTTCAAAAAATGTCTTGTTTCTTGA
AGAAAACTCAAATTTTGTTTAATTATATTTGTTGCTATaaggttttttta
taataaatccttgaatATGTGTTGttataaaatttaaagaaaaatcaaga
ATCTTTAAAGTTAAAAACCAATATATTTCTTTATCTGCTGGTCTGTGGTC
TATGGAACTCAAATTAATTTGATATGAATTTTGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00066387TCONS_00066387Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00066387-proteinTCONS_00066387-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:2630..11314 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
124.52	128.56	50.67	41.84	118.37	84.35	120.46	130.14	90.19	83.26	68.93	75.93	64.26	62.88	60.27	64.73	68.18	67.54	43.72	49.57	72.16	71.44	81.14	77.67	80.2	89.22	66.54	58.95	56.46	56.66