XLOC_041978 (gene) - C. hemisphaerica

Overview
NameXLOC_041978
Unique NameXLOC_041978
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_466:277747..281383+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041978 ID=XLOC_041978|Name=XLOC_041978|organism=Clytia hemisphaerica|type=gene|length=3637bp|location=Sequence derived from alignment at scaffold_466:277747..281383+ (Clytia hemisphaerica)
aaaaaattgaataacaaattaacATATGGATATGTTCAGATCAGATAGGT
TTTAGAGATTGAGTATTGGTGTAGAGAAAAAATGGTTCTCAAAACagcat
tttatattttcattgtaCAAGTTCTTTGTTTTAAAACGTATGAAACATGC
AAATGTGAACAGAGTGATATAGCATTTTGTTACAGATCAATTGACCCACA
TCGAGACATACCTACTGAATGTCACGCAGGGTTAAAATGTGATTGTAGGT
CAAAGAATTTGACTACATTTCCTACAAAACTCTCTCAAACACCGGACAGA
GTTATTTGGCTGAATTTAGCTGATAATCTTTTGACCAATATTACGAGGGA
AGATTTAGGAACATTTACAGGGCTACGTTTTCTGGATCTGACTCAAAACC
CTATTCAGTTTATTGGCTCAAAGACATTTCTTAACTCCTCTGGTCTGATT
GACCTTCGAATCCAAACTGACAGTTTGAAGTATAACTCATTACGCGGACT
ACGTAGCTTACGGGAATTACGGATCAACGGGAATGGTATTTTACCGGAAC
TCCCGACCAAAGTGATGAGTCATCTAAAAGACTTGATACATTTGGTGATT
TCCAATACAGCTGTAAAGAAATTACCAGAAAACTTTATGAATGGATATAA
GCAGTTGTTGATTTTGGATATGAGAGATAATAAGATAGATTCGGTTGATG
CAGGTAGTTAAAGCCCTTTTTCAAATTAACTTGACTCCAATACACGAATT
TCCTATTAgcaaattcatgtaaaaaagtcacgaaaaacgtcgagcaaagc
tctgattggctgaagaTTGCATACATaaacatatatttttttaatatccA
GAGTATGAGATAATCTTTACATGTCTCATCCAATAAGAGCTCTACTCGAc
attttttcgtgactttttcaCATGAATCGGCTAACAGGAAATTCGTGTAT
TGATCCAAATTTTCGTGAACAGGCCAAGAAAGTTTCTTGAACAGACGGAT
GCGAAAGATTCATAGTAACCAGATCTCTATATTTCTATCCGAGTGTTGCA
AAACCTTAAACCCATGGTCCCAACGGATCAATTTTGATAGACAAAACAGC
TAGGAAGATGTAAAAACAGAAATCatcattgttttttatttcttaggtGC
TTTCAACAACACGCCAAATATTAGGGAGCTCCATCTATCGCACAACCACA
TCAAAACAGTCCATCACACCATCATTAAACATGCATCCAAATTGAAAGCA
CTCGATCTCAGTCATAATGATCTGACATCTTTTGATAACGATTTCTTGGC
CAATATACCAGAGTTGTATTTATTAGATCTTAGCCATAACAAGTTGGTCA
ATATCACTTTAAATATTCCTATACTCACTCTGGATCTCAGCTCTAATGCC
ATCACCACAACTGATGATATGCATTTCTCTAATTCATGCTGGATTCAGAA
TCTGAACGTTGCCAACAACTCAATCATCAAGTTAACCAGATTCTATCAGA
TTGATAAGGACTTAATACCATCGCAATACACCACAAAACTACAGAAAGTT
GATTTTTCATATAACGGTATACAAACCATTGATTCTGATGTTTTTGAACG
TTTTTACGAGCTTAAGAAACTGAATCTTGAAACGAATTTGCTATCAAATA
TTGATCATTTGATTTTATCGCGAAATGTATTTCGTTTATATTTGGCGGAT
AATAAGTTTACAAGATTCCCAAACATCATTGATAAACTCAAATTTATTTC
GTGGTTGGATCTATCAAACAATAACATTAAAGATATCCCTTTAAAGAAGC
TTGTTGATTTAATATCTTTGCGTTATCTTAACTTGAAAAACAACCTTCTG
TCACATTTGCCTGTTGATTTTCTCTCAGGAACCAAGTTATATGATTCATT
TGATCTCTCTGATAATCCGTTGGTATGCACATGCGCATTAAGAAATATCT
TGACATTGAGTACGACAGAAAATGCAATTATTTTAGGAAACTGTacagaa
aatgaaacaatcacAATCGATTTAAAAGTATTTAAAGATATTGCAAACTA
TAATAACATAACCACGGCAAAAAGTACGGCAAAACCTGATCCAATTGACA
CGACTTCAACAATGACGGAAACGCTGCCCGACGAAACAACGACAAAACAG
AAAATGACGACGATAAGTTCACCAACAAAGGGTAAGCTACCGGCAACAAG
GAAAACGACAACGTCAGAATCTCTACGAAAGGAGTTCACCACGTCTATTG
TCTTCAACGTGATTCTGGCCGTTGTGGTTCTATTATTGATTTTCCTGGTT
GTGGTTCTATATGTGAAATATAAGAAAGTTTATTCTTTGAATGCATATCA
TACTAAAAGGGATACAGTACAAATGGAGAATACTCATGATAAAATTGCAT
ATTCAACAGAAGAAAATTAAGTAAACGAAAAGGAACCCAACGATACATCA
AATCACCCAAAACAGATTATCCATCAAATACCATTATCCATCAACAAAAG
ACTTTCTAACAACTCCTCCAACGAAAAGATTTTCAATGAAACCAAAGATG
AATATACCAAAGCCCTGAAAAAAGGGGATACCAAAACCTCCAAATGATAT
TCAATAAATGATTCGTAAAAGATGAAACTGTCAGTATTAAGTTGATTCTT
GTTTACTTTTCTTAAAATCGTATGATTTCGCGCTGGTTGTGTTATGCATG
CAATCATTGAACACTCTTGGTGAATTGATTTATACATACTGAAAAACTTT
GCGCCCAAGAAAGAGTATTAATGCACTTATGAAGCCTCCcttaaatttcc
aaaattcaaatttttttagacctaaagttttattaaaaaatacagaCGAC
TTTTTAAATATCACAGAATTATCTCGACAACACGATATGTCGAATTATAA
TTTTGTTCCAAGTGGAAACATCTAGACTGAACctcaaatgaaatgaaaaa
tattcaaacaaCATTCCATAATCCTTTGCTTATAACAATTTATTTGGGAA
ATTACTAAAGAAATTTTGGTGTAATATCCTTAGATCAATATGTATCAGGA
CCTTTTTGACGACCCTGCCGACTCACCAGACTGTCTAATGTTTTTTCCGG
TGGCGAAAAGTCTTATGAAATTACGCCGAACAATTTGTCCAAATTCTTAT
CACCGGACAATTGTGTCGAGCGCAAAATACGAGGTTTTAACATCGGACAT
ACAATATACTGATTTACATTCGGTGTTTGGATTGTCTGGTGATAAAGAGT
TTTCTCAATTGAGACCGGACATTCGCTTCCGGCGGGCTTCCGTAAGGCCG
GTGCGTCGGCAGTGTCAACCTTTTCCCCTGAAAGTTCTAAGTATAGCGAT
TCTACTGTATGTATGATATCGACACAGTAGTCTCCATGACGTCGACCTCT
ATAAATCGAATAATCCCTTATAACTCGAGCTCATaatcgaaaatttttaa
atcccCTAAAAAGTGTTCGAGTTTTCGAGATAGTTCTGTatataaagaaa
atataaagttcttATTTATTTAATCAAACTTATATATACATATATGGCCT
AAAAGTGATgtgtatgaaaaaaaaaatgttagaaaatactttaaataaaa
tagtaaaatttcGATGTCATAATTTAGAATATTTTCC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067195TCONS_00067195Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067195-proteinTCONS_00067195-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:277747..281383 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.06	0.05	0.04	0.04	0.02	0.05	0.18	0.27	0.4	2.75	2.19	0.49	5.6	4.65	4.3	4.04	1.19	2.2	4.12	3.66	0.57	0.4	0.3	0.2	0.61	0.4	4.89	2.4	0.05	0.04