XLOC_042198 (gene) - C. hemisphaerica

Overview
NameXLOC_042198
Unique NameXLOC_042198
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_471:373249..383521+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042198 ID=XLOC_042198|Name=XLOC_042198|organism=Clytia hemisphaerica|type=gene|length=10273bp|location=Sequence derived from alignment at scaffold_471:373249..383521+ (Clytia hemisphaerica)
CCCGATTCGGGAATATTTTCCCGAGAACGGAGTTACCGgtgcgaattttt
ttttcagaacaaaaacacaaaaacggTGACGAGGGGCAGATTTTACTGTT
TTCATCATCTTTTTGcaaactttgtttgattgtcaacTTTACTGTGTCAG
TAGTATCGGCTGTACTGAGTTACGAAAGAAGTCATTTCTCTAGCAAGATG
ACTATTTTACCCAAAAAGAAAGAATCCAGAAAAGGAGTAGAGGAACATGA
ATCTGAATCACGAAATCGAAACAGGAATAGAACTTCAAGAGATCCAAGGT
GCATCTCTGGTAGATCTAGCCACCAACAAGTTGAGAATTCAGAGAGCAGC
ACAAGCCACACACAGACTCAGCAGATATATAGTGGTATTCCTGTTTGTAT
GAACTCTGAAGATTCACCGAGCTTACCGTTAAAGAGACAAAGACATAATC
GAAAAAGTGTTTATGGCTGTCATCACAGTTCATCTGCCCCTTCATCTTCC
TCCACTTGCTGCAACAGAGACAGAACAGCTTCAGACCACCAAATACCACA
TTGTTCTAAAAGAAACACTGAAGAATTAGGAACAGAGGAAAAAACTGATG
GCTATAATAGCTCTGATGAATATGGTGAACCACCACCTCCCTGTGCCACA
GGCTGTGGTCAAAAGGTGGGTTGTGAACATattctgtttgataaaagttg
aatttgatcATGGGGTGTtaataccgtaacttggtctaatagaccttttt
tcaaagagaccACCCTgttctgttgaataattataatgtagtccagcaga
aaaacaatgatacacccatacataattattacaatatgcatgaaacagta
attatgcattgaTGTATCGTTGTTTGTAtgatggctggactacataatta
ttcaacagggttgcctctttgaaaaaaggtctatttcaacatccctcctc
taattctgacaccctttttatcagctgaaattgatagaaaggttgaaact
gtttttctttgctttagtggttcAGAGAGGAACAATCCTTTTCCAATCAG
TGATTTAAAGTTTCacattattcctgtctctaaagacagttagtcacact
aggaaatctagctttctgaaaaaacaatgtcagtcatctacaggatacat
ttcaacaacaaggatgagagttacctgaatcaagttcgcaagacaatatt
aattaaaacttgaaagttggaaacaaaataaaacNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcggtgcatttttttgcttgagagtcaagtaaacgatatagcgctttcg
cagcattaatctttgatacgcattttggcgggacgctagtgtggctaact
gaaagaagggtgtcagaattagacaaGTTCTTATCGAGGCTGGAAATGGT
GCACAATACGACAAATATATTCGGCATGAggtggcaatcacaaatatctt
cgtttcgcgtcgcccgaccgactctcgaaaatagagtagaattgagtcgg
taaatttgtcggactttttctgtcaatgagctttccttcgttcaaaaatt
ttattattgccgatttttttgcgagcgatttctagcgcattttgcgtaat
ttgcgatCCCTGTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAACCCTTACAGTCACAACCGATTCAACAACTGATGTTGATGTTG
TCGACATTGACCAGTCATCTGATTATAATTTCTCTGCTGGTAAACAAAGT
GAAGATgacgaaaaaaacaaaacaagaagaGGCGAAATCAAAGATAATGA
AAAGAAATCCCAAAtctgcaaattttacaaaattggaACATGCAAGCATG
GCCTAAAAGGAAAGGAATGCAACTACACTCACCCTAAAATGTGTCGCAAG
TTCACACAACATGGAACAAGGCAACCAAGAGGATGTAACCCTGGAACTAA
ATGCAAGGACTTTCATCCAAAAATGTGTTTAGATTCCCTTCAGAAAGGAG
AATGCTTTTCAGAATCCTGTTGTTTTGCTCATGTAAAAGGAACAAAAAGA
CAACCTCCAACTGTGAAAAGTAGTGTAGCGCACAAtaacaaacaatcaaa
caataacaaacaagaGCCTGGTCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTACAAATCCCCTTCAGGAGAAAATATCGAAAGGAAGA
AATTTGTGAAGGACCTGGGAGTACTAATGTCAGATGATGCTGTCTTTaca
catcaaataaattaaGTCATTGAGAAAGCAAAAAACTTGATTTCCTGGAT
TCTGCGGACTTTCTCTTCGCGTTTACCCTGGCAACTAATGATTACTCTTT
ACAAATCATTGGTTATTCCAGTCATTGAATATTGCTCAGTCCTATGGAGT
CCAAGTGCTGTCAGTTCTACCCAAAGATTAGAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTATTCAGGTT
TGATGGATGCAGCATTGTGGTGTGAAGCAGAAAGTTTCTTGCCAGAGCAT
GAAGCTCGAAGACAACCAAAAGTAAccaaaagtaaaaagtaaccattcgc
agcattttgactttgacattacatgcgccattttgtggtcggaggtcaca
gtggctgcttttggctgctggctggctggcagttagcctagaaatctaag
ccaaAATGTGATATGAATTCTCAAAACAGTGTTTGATTTGTTATGTTAGG
CCTTGCTATAGTTCTTTACATTTTGAAGACATGCTAGAAGAAGGAGCCAT
ACTATACACTTGTTTAGAATTAGGTTACTATATTTGTCTTTATTTCCATA
GAGAATTTTTGTTGAACATATGTTATACATCATATTTGACACTCtggctt
gaaaaaatttcagaGGAAAACCTAATTGCCAGGCGGTTGGAAATATGCCT
TTCACCTGGATATTTATAATCATAATAACCACAACCAGGACGATACATTT
AGACAAAACTTAACATTTCTAAGATTATTTtcaacagaaagaaaaattcc
AATCACTATTCAGAGACTGTTTTGCATTAAGGCAAGAAATTTTTTcggaa
caaattttcgcggaatttaattttccaGTTTTTTCAACAAATCcgcaaaa
caaatttttcatgatttaaaaaatcacctatgaaattggtctttttaggg
caaaataggtcATATAACAAAAACTCCTCTCAACCACGCAACTAAATTCT
GCAAAACTTccaaattttgagctgtgaaccgtgaaattgaatttttctat
tAAGAAAGTTTCTGTCCTCAGAGTGACCTTTCTAGATAGGTATATCATGC
CACAGACACCAAATGTATTAGAACCCCCCCCCTGGACATCCTTATGAAGG
ATCTATTTTCAAGAAATGAAATGCATCGAATTGATTCTATTTTTCAACCA
TCATAGagagaaatatattttgattttgctcatctttttaacttttttta
cgCAAAATAGAAATTCTCCAAATTATATtgagttttgaaactcaatttaa
aataaagtatttttcccataaaattatataaaatgctattttgaatgata
aattctAAAGAGTGAATTAGAATTTCAATTTAGGCCTAAGTTTGACTCAC
TAAACTGTCAAAAGACTTTGGGTATACATCCAAACCCCttctgaagatat
tttcagtcaTATATAATTATAGcatttttacttgtttttattgtaaaagg
ACTGATAATAAACGAATTCAATGCCAAGATTATTTTTTATTCCCTGGAAA
TACTTTCAGATTCTTATCATTGCCAAAAGATTTTGGGTCCATATTTTAAT
AGAATTTATTCAACCATTTCTCtcattccttttttttttcaggattcATC
TTCATTCGACATTGTTGAGGTATGTAGGCAAGgagaaaataaagtttttg
caTATTACATCCTGTGTTTATTCAAACAATATGAGACAatcaattttact
tttaaatcaGTGTCTTTGTGGCTTCTTGTATCtggtaaatttgaaaattt
aataaaGGGTTCGCTGAGTTTGTCCAATATTTTTGCCACTTTGCATTTGA
ATATTGATTGATGTCAAGTTTTGTCACCACGACATTATTTACTTTGCTTT
CTTTGAAGATGGAGAAGAATTTTGAGCATGATTTACGTGAGGAAAAAGGT
TTTAATATAAAAGAGATGGCAACAGATGGAGCTTGCTTGTTCAGAGCTGT
CGGTAAGTGTCGCTCTATGGTTTATGATAACAAAAGAGAGATTCATTTTG
TTCAGTTGCGAAGAATGACAGCCAAAGATTAATTTATTTCCATGATTTTT
GACAAATATCTTGCTTCTTTCATTTTCAGCGGACCAGATATATGGAGACC
AAGAGATGCATGGTgttgtcagaagacattgcatggATTACATGGTTAGT
AACAGTAATATGAAATTTCTTTAACTTCAAATAATAATCCAGAATTCCTG
TACGATTTGCCGTATCAAAATTACAAttcttctcaatttttctttcaggt
gAAAAATCGGGATTTTTTTTCGCAATACGTGACAGAAGACTTCAACTCTT
ACATTGGACGCAAAAGGAATGAACATAGTCATGGCAACCATATTGAAATG
CAAGCCTTGAGTGAAATGTATAATCGACCTATCGAGGTCTATCAATATTC
TACACGTAAGTTGTTCCGTCTTTTCGTGTGTTAAACGCTGGCAAAAGTAG
GCTGGTACAAAGTTGAATCTTTATGATTTGGATTGCCAAATAGCAGTTAT
TTCGCCCTCAATTTGTATACTTGCCATAGTGTTAAGTATATCAAGAATGT
TAATTGTCCACCCACTGTAAATTCACACAAAAATATGGTGTTCATGTGAG
TGTGCTATCAGTTTGTTGTCACTACATGATGGCTCTTTCACGGGGTGGGG
GGGGGCTGCTACCCATTTTAGGGATAAATATTggaatttttgtttgtttt
tttacattTAGGGAGGATTGAAATTAGATAATatgatttttacgaccctt
tgagggactttgaAGGTCCAAACAGGTACCCTTAAAGGCGCCACATACCC
GTACCTTCCATTTGCCTAATTACTCCCTACCCCTTCTTTCCAAGCTTCCT
GgtctttttctcttttgtaGAACCGATCAACACTTTCCATAGTCGAACAT
TATATAGCAGTAATGACGACACACCACCCATCCGATTATCCTACCATGGA
AACGTTCATTATAATTCAATCATTGACCCTTACAACCCTACTGTTGGTGT
TGGCCTTGGTTTGGCTGGTTATAAACCTGGAGTGAGTTCATTACCATTGT
TCATTTTCGCTGTTTTCTGCTCATCTACATTTAAATACATTTAAATAGAT
ACTTTTAAAAAAGATGGACCAGTGATCAAGTTAAGCTTAAGATATTATCT
AGattagagtctacttttggctgaaattcgctttttcataatttttgatg
GCTACTCTCACAATCTTATACTTTAGAACTTTAGAGGGTAATGAAGACAA
GTGACGAAGTTGAACCGACGAAAATCTTACCAGGCGATAAATTTTGCCTG
TCTAGGTTCCGTTTAAGGCAGCTAAGTCATATTTTTGCGGTGggagaggc
ccccccagcggtttgcgtgatggcgtgattgggacttttttcttgcgtga
tggcgtgataagagattttttttggcgtgatggcgNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttgcgtgatgaca
aattttagcgattttcgtgatgcgtgatggagaaaatttttttgcgtgat
ggcgtgattaggggtgccgctgggggggcctcgtGGGACgacttaacttt
cttttcatttattACAGACAGAAGAGGAGGAACTGATCAACAATTGTGTA
AAAGAATCAGAAACATCACAACTCGAACAggtttgtttgaaaattaaaat
cgtaGTCTGTGCTTTGCTTAGGCTGCACCCAtccctgaaatattttttgt
tctagTAAAACATACAAAGTGGACGTTGGGAGCTTATATTTTGCTATGTT
ATCATTGTCTTAGGGAGAAAACGTTTTCTCAAGATGATTGATAGATTACC
AATACGTTGTGTTTTAAATTTAATTCCCCCGCTCTTTTTACAGGCGATGT
TAGAGGATAAGTTGAAAGCAACGGACTGGGAGACTGCCGATGAGGACATT
GCAGAAATGGTGGCTAGAGAATCATATCTTCAGTGGCTCAAGGATAACCA
AAAGTCCAAGGTGCTTACACAACTATGCTTCCAATTACTTTACCCTTCcc
aacacccccttctcacagacccagtatgattttttcagtcagtggtagta
aaaataaactgaaatggtCCGAAACTctatggggattgatattcccatgt
ttttttatggctAGGGATTTAAATTCTATTGTTGGAAAATTCAATGAGGA
TAAAtggcacaatattttgcagtcaggatttgtttatttgattatctcCA
GTGGGGACGACAGCTGGAGTATAATTTTCtgctggggacgatattttggt
caaattctCCAGTGGGAAGGGCggtcccactgggtctgtgagaaggcgGT
GTCTCCCATAACTTACTTTTAAATCACTATAAATATAATGGAAGTTGTTG
CttgatagagacttcatttaATTAAGAAAAAAGATTACATGATAGAAGCG
ACTTTGCTTTCACTATAATTTTTTACAATATCTTTCTTACTAAACATTCA
TTATTTTTAGCATCAAAGCTCAAACATGGTTTATGTATGACCATATTCTG
ATACAAATTtctctctttctttttttgacaGAATGACACAAGCAGCTCAA
CAGCCAGCACTTCTGCCAAATCTCACTCACCACCAAAAGAACTCACCCAA
AAGTCACCACCCCGAAAGTCACCCTCGCGAAAGTCACCGTCCAGAAAATC
TCCGCCTCGAACGACGGCGATAGAACACGTCACAACGACAACGTTGTCGA
ACCAACAAACTGCTTGTTGCTCAACAAACACTTTACCCAACCCACAACCA
GGATACACTGCTGACTGGCAATACtcaggtacacgtttttttttattatg
taAAAGTTAATAAGGCTCGAACCCTGAAAATAGACAAATCTTTTTCACCA
TCTCGTATAGTAAAAGCTCTTTAGATAATCTAACTATGACAGACGATAGT
CCTTGGCCCAATAAGTATATGATATATTACCAGAcgtggtcaaagcaaat
ttttcagaaaatgagctagaatgctaagcaaccccagccTTGACACGAAA
ACTGGagctatttataaaaaaagttagtatttcATGATCCCATCTTTACA
GACATTAATGCTCTTTTTGACAACTATGTCGagtagattttttctttttc
ggtgTTGAACCTCCCATATTTCTGTCCTGTGTTTTCTTTATACTATAGCC
ATGTGATGAtttattttcgttattttcagaATGGGGCGATGACAGTTTGC
TAGCAGCAGTATTGGCTCAATCACAACAAGATTACCTTCAAGAAATGGAA
CGACAAGCCCCTTCATCTTCTTCCAAGAAATGAAtttcgtttgtttctta
ttcgATCTTCTTCATATTTGTATTATAAaacattatatattatattgtcT
TGTGTCTAGTAAATAGATGTTCACTCTATATTACCTTAATTAACCTTTGT
TGTTCCTAACCTAAACTGggatatatattttcaaacccGGGGTGGATGCT
TGGGCAAAGAGGGGTACGGGGCTGTGTCGCTTGTCAGAATACCTTTTTTC
ACTAACACAAGTCCCAGggtcac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067571TCONS_00067571Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067571-proteinTCONS_00067571-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:373249..383521 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.08	38.51	14.34	11.56	25.04	21.56	27.25	29.48	25.32	23.6	43.88	37.61	49.82	66.09	36.94	41.16	27.33	33.84	63.68	49.27	40.01	38.3	39.5	43.39	87.73	88.93	19.9	24.17	24.84	28.3