XLOC_042793 (gene) - C. hemisphaerica

Overview
NameXLOC_042793
Unique NameXLOC_042793
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_486:36834..40788+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042793 ID=XLOC_042793|Name=XLOC_042793|organism=Clytia hemisphaerica|type=gene|length=3955bp|location=Sequence derived from alignment at scaffold_486:36834..40788+ (Clytia hemisphaerica)
ATCCCTGCATCTGAAGAATCGAACGAAATGACTTCTGCTTCAACAAATAA
GGATCAAGTCGAGAGTCCGTTGAATGCAGATTCCCAAACCCTCAGTCCAA
AGGACCAAAATCAGGATCCAGCTGAGCAAATGTCTAGAAAACGTCGAAAT
ATCGAAGAAAGTGACGACACTGTTCCTACTAATAAGTTTGCTAAAATTGA
GGAACGTTTCGACCTGTCTAACAAAGACAAAACAAACTCTTGGAGTATTA
AATCTGATCTTGCGGAGTATGCCATTAAACAGATGAACTCCTACATTAAT
GATGGTGATATAAAGGATGAAATTTTATATCAGTTTCCGATACCAGACAA
TCTAAATAACAAAAAGGAAATGGATTCCAATATTAGATCGCTTCTATCTG
AAATGAGAGCGAAAGAAACTTTGTCGCTTGACAAAGCGTTTGAATCAGTC
CAAGACAAAGTCTTGAATGTTTTTGGACCCCTGTCCCAAGTATGGGAATT
CTTGGAGATCCAGAAGGATCAGGCAATCGAGCAGACCTCAAACATGTCGG
AGGAGGAGTTTACATCAGACATGGACGACATGCTTCGCTCAGCAAAAGAC
TGTGCAAGACTGATAGACATGACAGTCACCATGCTTGGACAAGCCTTTAA
CAGCTTATCTTATTACAGAAGAAGGAATGCATTGTTGTCAATCCTCAAAG
GGGACAAAACGAAAGTGAAGGAAATGATGAAGGAGAACAAAGATATCCTT
CAAGAGAATACGTCTTCTAATCGCCTTTTTGGAgagaaatttgatgaaaa
gatGGTGGAAGTCGTTAAACTcaagaagaaatcaaaagaatttttcaatg
tAATGGATGGCAAAACGAAATCGTCCGTTAATAAACAGAACAGAATTGGG
CTCAACCAGTCCTTTCGTGGGGGCCCCCTACCCGGTACAAGTGGAAGGGG
GCAGAATTTTTTCCAAGCCAACCTCAAAGTGGAAACAACAGAATTGGTAA
GTCCAACTTCTTCTTCATTACAAACAAATTTAGTACCAATTTTGTCTGTT
CAGGACTATCCAAAAGTCCATCGATTAGTGAAAAACCTGTTTCCAGTCAA
GTTGAGTCAGAGTCTACCACTTGCCGGAAGGgtaaaatttttcatcaaaa
actgGGAAAAACTGACAAAGGACCCCTCAGTTCTAGAGATAGTTCAAGGT
TacaaaattccatttatagaCACTCCACATCAAACTTTTTTGCCCAAAGC
AGGCAACTTATCCAAAGAAGAAAAGGAACTAGTGGAACAGGAAATAGAAC
AAATGCATGCAGCAGTTGAAAGGTGCAATAACAAAAGTGAAACCTTGCAA
AGACCAGTTTCTCAGCAACATTTTCACAGTTCCCAAAAAAGATGGGGGGA
ACAGACCTGTgataaatttaaaacatttgaaCAGTTTCATTCACTGCCCT
CATTTCAAGATGGAGGGGTTGTTCCTTGTAAAAGAACTACTTTCACCCAA
CGATTGGATGTGCAAAGTGGATTTGAAGGATGCCTACTTCTCCATACCCA
TCCATCAGAATTCACAGAAATTCTTACGTTTCGAATGGGAAGGTTCACTT
TATCAATTCCTCAGCCTGTGTTTTGGCCTGTCTCCTGCTCCACTAGTATT
CacaaaattattgaaagttcCAATAACACTCCTAAGAAAATTACAGATAA
GATTGATAATTTATCTGGACGACATTCTTTTGATGGCTTCATCCAAGGAG
GAATTGGAGATAGCCAGGGATacattgatttttctatttcaacATCTGGG
TTTCGTAATCAATGCGAAAAAGTCAGAATTGACTCCTACGAAAAAGATAG
AATTTTTAGGGATCATTATAGATTCAGTGAAGATGGAAATGTCTCTATCA
GAGGAAAAAGTTCAGAAAATTATTGTGAAATGCTTGAAAATGCTGgacaa
gaaaaaagtttctataAGGGAAGTTTCTCAGCTGATAGGGACATTATCAT
CCACAACAATGGCAATCCTGCCAGCTCCTCTCCAGTACAGGTTTATACAA
AAACAAGTAATTCAAGAGTTGAACTTTTATCTATCATACGAGAAACAGAT
TGTACTCTCCCCCCAGGGGAGAGCAGAAATAGAATGGTGGATAAACAACA
TACGTTTGAACAATGGAAGGTCTCTACTTTGGAAACCACCCCAGTTACTG
ATAAAATCAGATGCCTCAAAGGAAGGGTGGGGAGCTTACTGCCAAGGAAA
GAAGACCGGGGGACCTTGGTCAGAAAGGGAAAGGGACCTGCACATAAATA
TTCTGGAATTAAAAGCAGCAAACTTTGCCATATTGACATTCACCCAAAAC
AAGAGTCATCTGAACAGCATTCATATTCAGATAGACAACATGACTGCCCT
CTCCTACCTAGTGAAAATGGGAGGGACAAACAACCAGGAATTAGTGAGAA
TAAGCAAGCAAATTTGGAATTACTTAATTTCCAAGGGGATCACACTTACT
GTAGAATATCTTCCAGGGATATTAAACAAGGAAGCGGATTTCGAGTCCAG
AAATGCGAGGGATTGCAGCGAGTGGAAACTAGACCCCGGAGATAGACCTT
TTTGCGTCAAGGGTCTCCAAAGAGCTGAAAAAGTATCTCTCGTGCTTTCC
CCCGTTCAATCTGATAGGAAAGGTGCTAGCAAAAGTTCAGAGGGAACAGT
CATACTTAATTCTAATAACACCAGCTTGGCAAACTCAGTCTTGGTTTCCA
AAACTAATGGAAATGGCAGTTGCAATTCCAGTTCTTCTTCCCTCATACGA
AAGCCTTTTGAGCAACCCAAAAAAGGAAATTCATCCATTGTTAGAAAACC
ACTACTTAAGACTCCTGGCATGGAAAGTTTCAGGAAAAAGGTATCTTCAG
AAGGAATTTCGGAAAGAGCTTCCAATCTCATCTCCAATGCAAGAAGAGTT
GGAACAATATCTGATTACGAATCGGCCTGGAGAAAGTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTGGTGGCTACGAGCAATAGCTTTCAGCTATTCTCTTAGCCTGGAT
TCCTCGATGCGAGCGAGATCGGGCTATACTCCAATATTAGATCGTTTGTT
TctattttatgaaataaaattgaggATTACGTAAGGGCGCGAAGCGCCTG
AAATGTAATCCagattttatgaataaaatagAAACAAACGATCTAATATT
CCCGCCCACCCGCTCCTGGCATCCttgtttatttctattttattctcTTG
TGTATTTTTTCAGGTTATGGCCCGCCAGGCGTAAAACCCCGTGGACGCGG
ACGTGGTCGTGGGCGTGGTGGTTATCGCGGATGGCGCTGATTACAAACTA
GTTTTTTCAATCAAAGATAGAACCTGAAACCTAATTACTTCTCGTTATTT
TCTCTGCATTCCATTCTTATTTTGGCCAAACTAGGGAAAATCATCCTTAA
TAAAGTATTCGATGTTTCGACCATAGTAAATAAAAAACGTCTTGATATGT
ATCTTTTTTCGGAAGTCTTGGAATctgaattatatttttctaaaaacgtT
ACTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068602TCONS_00068602Clytia hemisphaericatranscript
TCONS_00068603TCONS_00068603Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068603-proteinTCONS_00068603-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:36834..40788 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13	1.17	0.72	0.4	45.62	39.17	12.73	13.56	5.23	5.75	7.3	5	3.6	2.95	2.94	3.07	4.85	4.19	9.89	9.16	4.07	3.84	2.68	3.85	0.49	0.55	5.2	3.08	6.95	4.95