XLOC_042794 (gene) - C. hemisphaerica

Overview
NameXLOC_042794
Unique NameXLOC_042794
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_486:47527..56149+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042794 ID=XLOC_042794|Name=XLOC_042794|organism=Clytia hemisphaerica|type=gene|length=8623bp|location=Sequence derived from alignment at scaffold_486:47527..56149+ (Clytia hemisphaerica)
ACGGTCGTCAAAATGATAATCATGGTATCCATCATCTATTGCAATCGAAT
AAACATAACGAAAATTGCCAGTGTAGTCATATTCGTCAATTCTTAAGACA
CCTTctcttttgaaataaaaatagattctctcttttgttgcattgagaaa
aaagaaaaaatggtcaaaaactgAAGATTGACTGAGATCGATGACAACTC
TCTTTGAATGACAGATTTCAGTTTGCTGCGTCTTTATAACATCCAAACAA
CATTCACGGAGACGAGTTGCTTCTCTTTCCTcattatattctttgaaaaa
ggTTAACACCAAAAGTGCAGTTACGTCATTTCCTCTTAATCCATACCAAT
TTTGACATCTTTCGTAGTCTTTACCATCGAATCTTAAAACAATATCTGCT
TCACTTGGCTCGATAGTTAAATCCAATACCTTATACGGATGATCAACAAA
AACATCAGGGAGATAATAATGATAAATATCTACTGAAAATTTCTCTACAT
TATCATTATCGAGTATATCATGCTTCACAATGACAACAACATTCCCAGTA
TACGCATCAAGTTCCTGCCAGGCCGATTCCGAACCATCCATATCTTGGAA
ATCAATGGTTAGAGTTCTCTTCTCGAGAGCATTTTGTTGTTCATTGAAAT
ACACCATAAATACACGAAGACGATCTCCACCATCCATATCTTCGAGAATG
TAAAAGTGTTTGCCAGTGTGGTCAAATACCCTTTGAAAGGAATTGATAGC
TTGAAAAGCATTACCCAAGGAAATGctcaattctttatttttgtattctG
TAGCTGCTGCTGGTGGCAGAAACATTGATTTTCTTACGTTGTTCATTGTT
AATATTATTCTTCACCCACAATCTAAACTATGGTAGAAGAAACTTTATGT
AATTGCAAACAATGAAAGACAGAGTAATAGTAAATTGAAATTAATTAGGT
AAAATTGTATAACTAAACGTGGTCCAGATTTCAAAAGTGACTAATCTCCC
TGTTTAGTTTGTTTAGACATtttgaaaacctttaaaaataagtttaaaTT
ATAGAATAAAATCTCCATCATGAatttgagggtgttcccatTATCTTGGA
GGTGGCGATTTTCGTTCGATGATTCCTAACATGTTCCTGGACCTCTctac
aaaattatatttttacacCATTTTTTTCGAGGTTCTGATGGGTTTTGATA
TCCTAATTCTACCTGATTAATTACCAGAAGTTTCATTTTGTTTATCAAAG
TATGTTGAAGATATAATAATTAACGTTCTCAGATGTCGTAAAGAAAATAC
TATATAAGGAAGAGTTTTctaagagaaaaaatgacaaaacaaaaattata
aaatgtatGAACGTTCAACGTTCCTTAAAATTATAGATAAATTTCGAGAA
AAGATTGagaaaaataaaagcaaaatgtaCAAGAAAAAGCAAGTTTATAC
catattctaaaaaaaataccttaaaagtTTGATGTTAAAATATCTATATT
TTGTGTACAGGAGGGGATGTACCAGATTTCGGAATTGAAAAATTCAGCCG
CTgttatttcaataatttttcgtCCTAAATCTTTTCAGTAGTTTGGAATC
CTGATATCATTTGGTTTATCGAAAAAAAGACCTCTTTTCACACTGAAATC
TCTGTAATAAGATAGCTTCACTCTAAAATTTCggaattttggcaaaatgg
ctcaaaaactaaagaaaaatcgATCAtgaaaccaaaatatttttaccctg
AACAAGATTAAAGGATTGAAGTTCTGACCATTAGTCCAGTTATAATCTAT
ATTTTCTGTAAGTAAATCATGTTTAAANTCCTGAACAAGATTAAAGGATT
GAAGTTAGTCCAGTTATAATCTATATTTTCTGTAAGTAAATCATGTTTAA
AGATAAAAAGCTATAAGAAATATAAGAATTGATTATGAACAACTTTTATA
AacccaaaaacttcaaaaggtttaATATCTAAACTAAAAACAGAAATAGA
AATAAacttatctttccaacaagatATAAAATTCATATTGCAAACAAACT
ATACATAATCTGGGTATATATAAAatgatttataaaaacaataagaTTCA
TTAAAAATCATCTACGAAAGTTCAGTTAATTTTCAGTTGTTGAAGATACT
GAACTTTCATAGAtgatttttaatgaattttattgtttttataaattatt
ATATACATACCCAGATTATGTATAGTTTGCAATAtgaattttaaaactaa
aataaaatttacctAAATAATCACTATAGAACTAAATTTAGATTGAAAAN
CAATTCAATAcaattcaattttatttgacgtcaaatacagTCGCATCGCG
AGAGCAGCAAAAAATGTGCACAATATGGCCGAAATAACTGGAAAAATATA
CGAACGAAAATCCGAGGAAATTGGTTCTTGTACCCCATCAAGCTGTCTCA
TCCATGCAAACACAAATAAAAAGGACACTTTACAATGCAAGAAATGCGAA
CGTCGAGTTCATTTGGCTTGCTCTGAGCTTCCTCCTTATCAAATCCAGCT
TTATCTTCAACAGTCTTCAACACAAATATAGAAGCTATCAATGCATGAGC
TGTGTGATCATAACACcagaattgaaaaagaaattgaacttcAAGTCTGt
tggagatttaaaaaaagatatcgATGCATGTGAGAACATAATAAAAGCAC
AACGGGAggacatttcaaatttgaaggCTAAAGTGTCAACTAACAATGTG
AATAAAGCAGTCACAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCAATATTTGGGAAAACAATCTTATGAGCTTTGAAC
AACATCTCATCTTGGCCACCCTCCTCGTGATTGCTTACATAGAACCCAGT
ATAAACCAATTCCTTTAAATTCCAATTTAATGAAAACGTCTGCATTTCAT
CATTTGGATTTAAATTAATGTCACTTGAAATCTCTTTGCTATTCAAGTCA
AACAGAAAAAATTTCGTCGATGAATTGTCTGGCTCGTAAAGTAAGGGAAT
CAAAAGACGTCCAAATTTCAATGTTGGAGGACCAGGAAAATTGACTTTAG
TAATTTTAAGGTTTACAGGAAGTTTGAATTCTTGACTCGATCCAATATGA
CCCTCTAGAAGTCTTTGCATGCAAAAGATTCCTGATATACCGTAGAAAAT
GACAATCATTGAATCACCTTCTCCAGATTGCAATAAAGAATGATGATTAT
ACAAACTAGAATCCCATGGCAGTatgtatgaaaataaaatcttccCATTA
AGATCAACTTCGAAGATTTCGTACgttttaatagattttttagaaaaata
cagCCTTTGTTTGGAATACAAGATCTTCATTGGATGGTACATATCGGAAG
AAAAAATCTCCAAATTGCATTCCACCCTTTTCAAATGAATCATTTGCATC
TTACTAACGTGTAAAACATCGATGCAAATTTCAGGTCGATATCGATAATA
CCATCTATCTTCTCTATATCTACGATACCCTTGGACAAGCagagttgatg
attttttatcAACACCACAACGTTCAAAATAAATCATATTCAGAGATCCC
Actggcatttttgaaaaaacatgcatgaaaaaatgccaaaaagagcagaa
aaaaatgctaaataatgctaattttaaatggaaaaacatgaaaaacatgc
cAAAAAGTAGAGTTATTAATCAACGAAGTTCCCGTGTTTCCCGTACCTAA
AAACAGTGATGTAGACATGATGAGAAATCGATATATAATCTAATAAATAT
CACAAACACAAGTAGAAATCATTTCACTTGGAATTTATTAATCAATCGAA
GGCTGCAATTTAAAATgtagcccaccatggttggacAATAGGAAAGTTTA
TGATTTTCAAGATgcaaaaaaagtgtcttttcaagggTGGAAAACTAAAT
AGAAAATAACGGATTGAAATGTAGGAACAGTATAACTAAGAATCAGAAAA
ATGTGCATAAGGCAAATTTTAGCTTAGGTAGCCCTGTTCCTGAAAAAAAA
CCAAGTTTGGTCCCAAaggagaaatatttaaaaatcatgTATATCCAGAC
ACTAGAATACAAGCTATAATGCAAgagacatttaaaaaattggtgCTTTA
AAAAAACCCTGTGTTTTGCCGAGGTCATGGACCTGTCTAAGCCCTGGAAG
AATAATGAGGTGGTTCACTGACATGTAGTCTTGACAAAACTTCCAAATAT
TGGCTACTTGTTTTATAAAGTAGAGCTTGAACGGAGAAaaacatagtgtg
cagagggatCTAAACCCCctatttttatttcatcccccgtATATGTGTAT
cccctatttaaaaaaaatttcgaacccgTGTTATTGACAGTAGCAGTCCA
ACAGTCATTCCAaaccgaaaaaattgaaatttgtatcaaaaattatatga
aaaaaagaGTTTAACATGGTGCCGCAGGCAAAGACTTAGCTATCTACACT
TGTTTTTTAGTTGCCCCAtaccaaatatctaaatcaatataaatatgata
gatattttgaccaaaagttGTTACCCCCCCTAATTTTTCCTTGACCcccc
cctaaaatcttaaaccCCCCATTTTTTTCGGGAAATCTCCTACCTCCCTA
TAAAGCATCAGAAAAGATGGATCCCCCTACCTGACACATCCTTGTTTTAA
CATTTCTGTCAATGGTATTTATTGAAAACTTaagataatattttatgttg
cccaccatggttgggcaagtgagaaaattttagaattttgggGGGCTGAA
AGTGCTATTTTGAGCTATCTTTAACGAATCTGAATATCAGGACAGAGAAT
AgacaatataaacaaaattcCCTAATGTTTCTCTGAAAAACATGCCAAAA
TGGTCCAAAACATGctaaaaaccatgaaaaatgccaaatttgcaaaaatc
atgaaaatcatgaaaaacatgcCGAGTGGGGTCTCTGCATATTGTTTTTA
AATCGGTCCTTGTCATAATTCAAAGTAATATCAGGTGTTTTGTCAATCAC
AATTACGACATCATTCGATCTTTTCAAAAGGTCAAAGATATCGAGATAAT
AAAGGTCCACAGCAATATTTTCATCTTCTGATGCTTTATAGTGAACAGTA
TGGACAACTTTTCCATGGTATGGAAACATGAAAGACCGTCTGCCGCATTC
GCATTCGATAGGTATTGAGATCCTCAATATCTTCTTTCCAATCGATTCAG
TTACTGCATCAAAATCGATAACAAAAATAGCCATATCAAATTCTCCATAC
TCATCCATTGCAATAATGTAATATTTACCAGTACCATCAAAACCTTGGTC
GTAAATATCTCTGTAGAAATCTACGCCCAGTGAGATTGATGATTCATCTT
TGCCAAGAATATTTGGAGGTACAAACATTGATTTTGCAATATtggtcatt
ttttttatttttcaatttcttatgTAATCTGAAAAATGAGAAGTAAAGTT
TGAAATCCAATTATCTATAAGCTTTAAGAAGCACTTACTACTCTACGAGT
CTCGCATAATTTCAGGTAATTTGGCGAAAATAAATGATTTGCTCGACAAT
CAATGAAATTAacgtactcttgtctcccgaatagacgaggggggggggtc
cgaaaatAAATAGGGgttaggaaaattttctaaattctaataagcggggg
gggggaatttgaaagtagaattttttttaactgatatcaatttgaacaat
aaaaaagaaacttatATTATTAAatacgtaaaataagaaccaatactaac
aaaaaggaaatttttaacaagtttaaggtctatttacgccaaattaaatc
cctgcaAAGTTTAACGAAATTTTTCAAGATAGAAATTCTATGGAGAATAA
TGCAtttttagtaaaataacatGTATTTCTTAGTTTACCAGAGACTAAAA
CCTtcccattcgccaaattaagtcCCCGCTAAAATTTACAAAGTTGATTA
TTCGCCAagttaaatccccgccaaaaatttAATTATTCCCAATCGCCAAA
TTATATCCACgtcaaaattaatccacttaaggtattttcGAAAGTTTCTT
TATTTAAAGTGATCAAAATACCAAATGGTCTATCTTAGAAAACaagataa
aaatggaaaaatggaaaaaaagtggCAGTCCACGATAAACATATTATTTA
TCAGATATGATCAATGGTAATTTTTAACAAAGACCACTCTGGTGAGGCAC
TTACATAAAAACTTGTATAAAAACATTTNAGATATGATCAATGGTAATTT
TTAACAAAGACCACTCTGGTGAGGCACTTACATAAAAACTTGtataaaat
cattttcaaaaggtCTAGCATCAAAAGATAGattcaaaagaaacaaaaca
aaaataaaaaaacaggtGAAATAATAAAAGCGATCAAATTCTCACTTTTC
AATTCCTAAATATCCAAAAAGAGTTGATGGTAGATTGAGCTTTAGTAATT
CGTTACTGCTAAATAATTGAAGTATTACCACTCGTGCCAAATGTTTCAGA
GTGattttttgaattgaatattCATTCATATTTACATGACcgattttgaa
aacattttctgccTCTCCATCGTCATCTCGTCAAAATAAGTGATCCCAAC
TTCGTGCAGAttccaatttaaaaaataattcggTAAAGGCAATCCTCTAA
AAATCCCATACCCTCTTAATTTCTCTCCATTGCAAATTTGAATCCAAGAG
ACAAGTTGTCTGCCTTTATTAAAGTCAGAAGCATTGGCNCAATCCTCTAA
AAACCCCATACCCTCTTAATTTCTCTCCATTGCAAATTTGAATCCAAGAG
ACAAGTTGTCTGCCTTTATTAAAGTCAGAAGCATTGGCAACCAAAAGGAA
ATCAACAAACCTTTTGATCCAGGGCCCGCGccacgattttgaaagtgagg
gggccaacaaaatatagtgactaaggaggcgcaaccatggtttgcgccga
cgggccggaaaattgtttgtttaaaacaaaatagtatAATTAGACTTATT
TAAGTGTCCATCTGTCCCGTCTTAGAAAGGTTCTAACGTTTTTATTTGGC
ACGtgcacagaaaagaaaaaaataattaggtgaagagaaactttttattt
tgctttgcaaaaaagtggaggggccatggccccccggcccccccggTGGC
GCGGGCCCTGTTGATCGAATATTGAAACGAAAACAAATTCGCATCTGATG
TTTCGTAATCAATTATTTCATCATTAAACTCTTGAACAATACATGTCCTA
TCTTGATTCAATTCCCAAACTCGTATAGCATTATTCTTGTGAGTAATTCC
TTTGTGTGATAAAACTATATAACGGTCGTCAAAATGATAATCATGGTATC
CATCATCTATTGCAATCGAATAAACATATCGAAAATTGCCAGTGTAATCA
TATTCGTCAATTCTTCTGTctcttttgaaataaaaatagattctctcttt
tgttgcattgagaaaaaagaaaaaatcatcaaaaactgAAGATTGACTGA
GATCGATAGCAACTCTCTTTGAATGACAGATTTCAGTTTGCTGTGTCTTT
ATGACATCCAAACAACATTCACGGAGACGAGTTGCTTCTCCTTCCTCgtt
atattctttgaaaaaggTTAACACCAAAAGTGCAGTTACGCCATTTTCTC
TTAATCCATACCAAATTTGACATCTTTCGTAGTCTTTACCATCGAATCTT
AAAACAATATCTGCTTCACTTGGCTCGATAGTTAAATCCAATACCTTATA
CGGATGATCAACAAAAACATCAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068606TCONS_00068606Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:47527..56149 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.4	3.82	4.8	1.14	0.55	0.82	1.96	2.68	1.91	2.08	0.76	1.06	1.5	1.28	2	2.56	3.19	4.01	1.04	0.4	2.07	0.72	3.36	2	1.64	2.56	0.75	0.95	1.21	2.08