XLOC_042881 (gene) - C. hemisphaerica

Overview
NameXLOC_042881
Unique NameXLOC_042881
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_49:175277..186106+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042881 ID=XLOC_042881|Name=XLOC_042881|organism=Clytia hemisphaerica|type=gene|length=10830bp|location=Sequence derived from alignment at scaffold_49:175277..186106+ (Clytia hemisphaerica)
CTttgatcaaaaattttaaaagtgtgAAGTAAATTATGTTAatgtttgaa ataaaacttgatGAAAATATTGTTGATAAAATTTAGTGTTCTCTCTCTCC AGATGTAGATGTCCAGCAATGTATTTTAAATTATCGTCTCCTTTCTACTG ACGTCAACTTTTATCAAACATGAAAAATTCTCTATTCACATAGAATTACT TTTTGTGTATGTATTCTCACCGCaactttgaaaacaaagaaatttgggGT CAAAGTAGATGAGGCTTTGGAAGGATATCCAATTTGTTTTAACTTTCTTG TCTCTATCTtttgttctttgttttgattttactctCGATGGGGTTTTaat attctcaaaaattatTGAATGAAATTTTCTCCTTAAAAATATATCAAACA ATCTTTTGAAACACTTATTTTACAAAAGGGACTGGATATTTTGTTTCCTT ACTTTCTTTGATAAAAGTTGGCGCAACATCTTCCACGTCACAGAGAATTC TTACTTGACTGGCAAAACGTAAAGACTGGTGTGATTGCTTTCATCTTATT TTAGACACATCAATCAAATCTTTAAAAGCGTTTGGTATTCATTTTATGAT TATGATGGTGGTGAGAAAGGGGCTGACAAATGCTGCTTGTGTGAAAACCG CTCTCCATTGTCTTCTGGGCAAATAGCAAACAAGATTAATTTGATGTACG TTgatgaatcaaaaaaatttacttttcataATCAGAAGTATTTTGTTTGA TTACAGTTTCGTTTGgatttcagttttttgttttgGGAAGAAGAtgcaga tttttgttttgattgcatTCGTGTTGCTGAAAGAGGTTTTATCGGGTAAG TAATGATATTCTCAGTAGATATTAAATCGAATAGATTTAAGGCCCCCCAG GTTATCACAACTTAAATTTCTTTTCTATCAAAATCACGTTgatcacgttt gttcctctgatcacgcaatcacgcacttttaaaatcttaaatcacgaaat cacgaaTATGAAAAAacgtaccctgagtatcagaggttgagttttcaaag aaaataataacCTGTGAAGACCaatgatagaaattttatcgcacatgtgt caatctaatcactgaagacaaaatcaaagatgaagagaaaATATTACCTA TTAATGTCTAgtagactgtatcagtatgcagtttactatttacgaattcc ccagaaacctccaagtgtaattgaaaggagtttcttcaaaagaaatcttt tacatgatccccaaatgtataacagtaattacaaaatttttatttatgga aatgtcactttaattgaatcaaaataatagacagactttatgttatgatt ctctatcactgactctttttaaaaagcattgatgacattcttgagttgtg ttttcaacgacgggaataaaaatatcaaatttgaacttcatccaagatct tggatggtcgtcatggttacttttctctgcgttgattgcgtgctgaatag aatctggattggtcggcacagcgtcgatatatgatttcgacctgtgcttt tcacggtagaaaAAACGCCAATCGCGCcaaaaccgctgggggcctcatTG AACAAAGCCAACatttcttgcaaaaaaaaaacttcttcatCAGAGAATTT TGTATGACTGATCATAAGAATGATGATAGAATACAAATTCGCGCATGCTT ATCTGGCGGACCGCCAGGACAGTTTAGAGATGGTACGAGGTATCGCTGAG TCATCCATAACTTTCACCATGTCTGAGCTTAAACCATCTAAATATACATC AATAATTTCGAAACATCCCATTAACTTGTTTTTGAGTTTCTATTGTATAC CTGTAGTTTAAATCTTTGACTTTTATGTTTATATTTCATCATAACACTTT CATCTCCATTTTTCGAGGTCTGTTCATTTTCTAGGCGCCAGAACAATTCA TTGGGGTCAGATTTTGAGAAAGATTTGAGTAAAGCTCTTAGAATTTACTG AGCAccaaaaacatttcaacaatATATCCCTGGCTCAGAAAATATCTCAT ATATAAATAATTCATCAGGTTGAAGTGGTTTTAGATATCTTATTTGTCAC CAAAGCATTTTAAGGAGGCCCCCAAGCGGTTTGCGTAATGACGTGATGGA GACTTTTTTGTAGCGTGATTACgtggaaatttctttttcggGATTGCGCG ATGAGTGGTCAAAACGTGAACgtgatttgcaaaatttttcagCCGTGATA CTTGATTTGGACTTTCAAAGGGATGCATGATTAttgtgatcagagttacc gcgggggggggggggNTTCATCATAACACTTTCATCTCCATTTTTCGAGG TCTGTTCATTTTCTAGGCGCCAGAACAATTCATTGGGGTCAGATTTTGAG AAAGATTTGAGTAAAGCTCTTAGAATTTACTGAGCAccaaaaacatttca acaacaTTAATCCTGCTTGAAAttgtaaaatcaattttacaCTTCTGTCT AATAACCCTAggggaactttttcccacaatTAGACCCAGatttttaatac attttttgcacaaaagaTCATGAAATTTCGCAAAGAATTGTTCagatttt gatttgagaaagctCTTCTATGGTTATTATCTCTATAGCATGATTTAGGC TCTCTAACGTACAAATAAACTGATCGATCAAATTTCGTTATCTTTCGTTT TCAGACACTCATGAAGACatttacaaaattctttctgAATCTGAGATGAC AATAGATGAAGATTTAGTGCGCCGCTCCACCACCACCAGGAACACCAGAG CTGTGGATCCATACCTGCTTACTATGACTCCTCATAATCAAGACGATGAT GAGATGCGGCTCGTTTCTCATTTACTCAATAATTATAACAAAGAAGTTCG ACCAGTCCAAAACAAAAGCGACGCTGTACAAGTTATTTTTGGGATGGCCT ACACACAATTATTAGATTTAGTAAGATATCCATCTGcttaatttttacat tttccttTCCAGGATTTACTTTAAATAGGTGGGTTATTTACCGCCTAGCT TTAAactactttttttcttttcttgaaattttgtgaTTCTTGAAGATttc agggttatataaagggtCTATTTATGGTGCAGATTAATATTCGTTTCCTT CGTTTTTTTGCAGGAAGAAAAGAATCAAGTTTTAGTGAGCAATGTGTGGA TTAGAATGGTAAGAAAGTCTcgcctcttcttcttcttctatcTCTTTCAT CAAGCATCAAGATAACCTTCTTCCAAATTCAAAATTAAGTTACATAACTT TTCCTACGATTGACAGGTAGAAAGCACAAACTACCAAAACCAACCTTCTT TCTCTCAACCCGCGGCTATTTGATCCTTGATATTTTCACTTACAAAACCC AGGGTTTCGTTGACCAAATCTTTTTGCTAATAAGGATAAAGTAAAGGAGC TAAGGACCAATGGGGATGATCAATGATCAATCATAGTGAATTTTGGGATT TCAGGGTATCAGTCTCACCGGGGCCAATTTTTCTgcttatttttcatatt ggtaATGCTACTCTCCGGTACTTAAGCGTCCCcgccaggacattcttatt tcaagccccccccccccgcttattaatttttgggaaaatgtttttgaagt tTCCCCTTTTGCcccaattctgctgtattagccttcttttcaaagatttt ccacccaggacatttttatttcaaccccctgcttattaagttttgagaat ttttccaccTTCCCCGCTTATTCAAAACCCCGAatttaggtacccgagag taagatGAAAACTCGAATTATCttactttttcaaatattgtttttCTGTT ACAGCGTTGGTTTAACCATTTATTAAAATGGGACCCTTCAGACTATGGTG GCATCAAGTCCATAAATTTACCACCACAGTTGATTTGGGTTCCGGATATC GTGTTGTATAACAAGTAGGTTTTGCTCCTTTTTTGTTGAGtttcaacttc ttttttttttaaccttaAACGAACAAGGTATTAATCACGACGCTCTAAAT TCTACCAGGCCTTGAATTTTAGGACGCCATAGTCAAACCTTTTTTATGCT CGCTCCTTTTCTGTCGAGTTTTCAACAGATTTTCAAGCAAGCTGGATTGC AAAACTTTTTATATTGAAATTTCCATAGCACACCCCTTCTTACAGACCtg ataggattttttcagccagtgaggATAAAAAAATTGGACTGAAACTCAAA gtttttatgactggggattttcattcttttatttcaagttagaaaattca gtggggatgagaaaaaaacatcattttgCAATGGggattgatttatttga ttattttgagtGTGAACAAAAACTAgtggataattttccactgtggacga tattttggccaatttttttagtggaaaggggtcccagtgggtgtGTGAGA AAGGGCTGTCATAGAAAATAGTTAATTTAGTTAAATAGTTCCATTCTACG ACGTCATGTCAATATTTAATTAAAGTATCTAActacaaaatccaaaaagt ttgCTTGACTTTAGGAGGATAAAAACTCCTTTTCATTTCCGAATAATGTA ACatctctgaaaatgaaaaatcccTTCAACTTAATACTTTGTTGATTTTT CAGTGCAGAAGAGACGTTGGGTGCAGGCCAAATGGATCAATTCAAAACGA AGATTATTTTGCAGCACGATGGTCTTAATAAATGGTTTGCACCCACTATT TTACGTAGTAGGTGCTCCATCAATGtagaattttttccttttgatgATCA GAAATGCGATTTGAAGTTTTTAAGTTGGACATATGACGGTTTGAGGATTA ACATCACGAACTCTTCACCTACCGCTGACCTTGCAACCTATCTACCCAGT GGTGAATTTGAGTTGATCTCAGCAGAAGCTGTTCGCAAAATAACCAAATA CCCGTAAGTCTACCCTCGACTTTTACGTTATAGACATGTGGTATAACCAG TCTAGTTTATATCTAAATAGCGTTTAAGAAAAATCCGTTTTGAAACAAGA CGCAAGTAATATCTTTCTACAAAAACCTAATCATCATTTCAATCATCTTT GATCATAGTCCTTTACTAAGTTACCCCTTTCTCGCACTGGAACGCCTTCC CACTGGTTAAATTAGCCAAAATGTCGTCCCCGGTGAAAAATAATACTCCG Attctgtccccactgaaaattgaaccaatcctcactgcaaaatattatgt aaTATTATGTAATATTATGCTATTATTCctattcccactgaattttctaa cttgaaaataaaagaatttaaatccccagaaATAAAAagcatgggaatat caatccccatcgagttccagtccgttatttttacccccattgGCTGCTAT CATAGCTGTATTTTTTATTGTGCTACACATGACTTCAGGTGACTTCGTAA TTAGAAACTgaggtttttttgtttttctgtgcATTAAGGTGGGTAGCAAA GTATTTAAGAAAGAGGATTTGGAAAAGCGCAAAATTTGCGTGGGATAAGA AGAAGTATCGCTACGGTCCATATTTTGTAGTTCCCAGGATCGTACATTAG TGTGTGGTCATGATCTAAAAGAGCAATTCAACTAATTTGTAACTATTTGC TAATACTTTAATGGTTTTTTAagagtaaaaattttttttgcccccgcaac gagcgtagcgagtgaggaggccttcatagcttcacgcaaggatattggac aggaatctcgaatctttgcgcgcGNGCAAGTAATATCTTTCTACAAAAAC CTAATCATCATTTCAATCATCTTTGATCATAGTCCTTTACTAAGTTACCC CTTTCTCGCACTGGAACGCCTTCCCACTGGTTAAATTAGCCAAAATGTCG TCCCCGGTGAAAAATAATACTCCGAttctgtccccactgaaaattgaacc aatcctcactgcaaaatattatgtaaTATTATGTGATATTATGCTATTAT TCctattcccactgaattttctaacttgaaaataaaagaatttaaatccc cagccataaaaatatgggaatatcaatccccatcgagttccagtccgtta tttttacccccattgGCTGAAAACCCCTACTGGGTCTGTAGGAACGGGGT GCTATTATAgctattattttttattgtgcTACGCGTGACTTCAGGTGACT TCGTATAGAAACTgaggttttttgtttttctgtgcATTAAGGTGGGTAGC AAAGTATTTAAGAAAGAGGATTTGGAAGCGCAAAATTTGCGTGGGATAAG AAGAAGTATCGCTACGGTCCATATTTTGTAGTTCCCAGGATCGTGCATTA GTGTGTGGTTATGATCTAAAAGAGCAATTCAACTAATTTTTAACTATTCG CTAATACTTTAATGGTTTTTTAAgagtaaaaagttttttcttatgagtga aggtagagagtctatcaccatatttccctaacatcCTGCCTCGAAGTGCT TGGAACTCGAACACAGTcctagtcccgctgctgaggtcgataaatgtttc atttcgtgacaCATATCATAGAActatttttttggtggaaacgcacgaat tagtatatgtagatttcaaaatcaaaaagcttccacgatattatcgtgca agtaacgagtaattggcgattttttgcgtttccaggcaaaattgcaaggc ctggaaataccacaaataggcccataacttttgatctagagaagttggga ctttggtgtaatacatttttttgctcagtttgaagagctctatcatgtga tataggtctttttttaatttgaagaccccccaaaaatcattgccttgcaa ttttgcctggaaacgcaaaaaatcgccaattactcgttacttgcacgata atatcgtggaaactttttgattttgaaatctacatatactaattcgtgag tttccaccaaaaaaagttagttccaagatgtgtgtcacgaaaattgtttt ctagccactttttcgatctcagcagcgggactatcCATTGCGATGCAAGT TTGTCATCGAAACCTTCAAACTACCATtcggcagaatgttagtgagacac agccatagccttatccagatggtgagtgaatgtataccgagtttatcgtt ctacatctgtaATTTGAGCTTTaccaatttatttttttcttgtagGTGTT GTGACGAGCCTTACCCTCATGTCACCTTCACCATTCACATTCGACGGAAG ACCTTGTTCTATTTCAACAACCTGATTGTTCCCTGCTTCCTCATCACTGC ACTTGGATTGTTGACATTCGTGCTACCCCCGGCAACGGGTGAACGCGTTA CCTTGGTGATCACGACATTGTTAGCAATGACAGTCTTCATGTTGATGATA GCAGAAAAGACGCCCACCACATCAAAAGTTACGCCCCTGATCGGTAAGTT CTTCATCGCTTCGATGGTCATCATTGGGTTATCTTTGATCGCAACCTGCA TCGTGCTCAACCTCTATGAATGCACTAGGGCCGTCGAAAGTGTTCCTAAA CCAATAAGGATTATCGTGCTGGAATATCTAGCGCCCTTCCTGAGGGTGGA TCCACCCATTCAACGTAAATTGGCACGCCCTCGTTCCAATCAGCAAGTTG ACACCGCAGTGCACGAAAAACATGGTACAACAGAAGTGACCACAGGTAAT GGAGCTTGGCGTTTCCATGACAACTTCCACCCTGCCCATCACCATCACCA CCATCACAGAGAAGAGACGTCAAGACAGCGCAATGTCGCTGTTCTGCCTA AAGAAATCTCAGAGGGTATTGCAGTGTTGAGCGAACGAGCCAAGCAACAA GAGAAATTTGATGAGCTGACGGAAGAATGGCAAGCAGTCGCTAAAGTGGC GGACCGCCTCTTCCTGATCATCTTTCTGTTGACGATTGCCATCACAACTG TTTACATTTTCGTTAACAGACCTGATCCCGACTCTATTTGAAATCTGGAA GCAGGATGAAACATTGTTTATATGTAGAATTATCAAATCTATACGAGAAC TAccatcaaggtcataatatttaagagaaaaagagaaattgcccaggaag ttttgaaaccacaatcgatttgtaagtgctctaaagtaggttcgaagggt agagttttaacgctagacttaaggcCTTAGGATcagaggatccaaaagtt caaaaatagtccaataaggctcagaatatagcctggaaatcTGCCAAACC CTCCCAAATTGAATTATTCGatcaaattaaagagatagcccaaaatcgac tttctcgccggtattttcaaatcttgaaaaacgtcaaaataaccggaatt ctcaatatatgaTTGTAGACATGCTTGCAGATAACCACAGCACCTTATAT CTATTTAATTTGAGAATTTATAAGGTTTTCCCGAGAGTTTCCAGGCAAAA GTTAAGTTGTATCTCTCAGGGTAACAAGAATAACTGTATCTGAGTTCGAA AATACGAAAGTCTGCAAAGAGTCCAATTATAATAatagagatttggaaaa agaatAAACGTTGCTAAGCGAATTTTTACACCTTAACccaatttaaattt tcttttgaatattttcacaCTAACGTATAAAACGATAATTTGCATCAGTA TGCCAACATGTGCTAGTGGAAGAAAAATCTTTGATGATTAgttatttcaa atttcattatttttaggGAGCTTCATAAAGTATGTTTTTCAGTCAACCAC ATTGTGTCTTTTGACCAAAAGAAAGAGTCCTTTTGAGGgaatggtaaaaa aaaaacgactTGAGATGATATTACTTAATCCTATTAGAGACTTTTTGTGA TGATTATTCAGTACGTACATTGTAAAACAGTATTCAAAATGACTCTGAAC TTGCATCTGTTACTTCATtgtatcattttttttctttttctgtatTGTGT AGAAataaattatacatttttcaatAGAATAAAACTATTAGTAaagacaa aaaatatatttgacaacaaaaatctctttaacaaaaaatataaaggaTAT CTATCTCTGTAAGTAGCTTATTAAAGGAATTTACAGTAAATCTTCTAGta tcaaaatatcttttttcaaatagaaagtaaaaataaatctattttgaTGT CAGAactcaacaaaaataaaatttaattgtTAAACCAAGTCATTTGCATT AGAAATTTTCCACTCGTTACTAGCAAAAAGAAGCAATTACATAATGTTTG ATGTTTAACGAACAAAGAACttgtgaattttctttgaaatccTTTATAAT GTCTCATTTAAAAATCAGTAGGTGacgaaacaaaaaagaacttcCTCAta gattttttcttatttcttatgAGATTTACACGACTTCCTCCAATGTTTGC ATTTTCACAGAAAAATACAATAAGTGACCAGCACAATTACTTATAAAAAA GTATCCCTCAATTCTTAGCCCTTAAACAAAAATACGGAATAAAAATGCCA AATTGTTTTTCTACTTGAAGGGAGCTTTCATGCATGATGTAAGAATAGAC TGAAATGGGTCCCCAAAGCAAATTACATTCACGACTGTtatatttcatgt ttttcacATCAAAAATACCGCCACAAAATAGcagaactttttgtagaaac ATGAAAACGTAGGTTTTAATAAAATCACTTATGAAGTTTTTATCTGTAAT TATACCTTGAATATTTCAATCTATGCTTCATTTTTAGTTTGCATGATGTT TTTAAGTACAACCCAAGCATCAAAGTAAAATATGAAACTGATTATCATGA AAAAACTCAacaaaaaaagaggaaaatgaaTTAACATATATTACAGTGTA ACCCTCAAGAAATCTTAGAATGCGAGAAATCACCAAAATATCAGGAACAT TCAGTTGTTGTCATCACCATGTTGCCCATTTTCTTGGTTACGGTCTTACA TCTCTGTTGCCCTAGAAAAAATTGGAGTTTTATGAGATGTTGACACCAGG GATTCTAATTAAAACTTGAAGTTTGAAATTATATATCTTTAAATTCTCAG AATCATTCCTTTTAATAAAGAAATCTCTTAGTTCTAAAGTACCTTTCTGT TATAATTTTCAAAGTAGATCTTCAATGAATTTAGTAACTTTGACTAAAGG ATTTCAAAAATTACCAAGGAAAGTTCATTGTTATAGCCTTTTCTAGGTaa gatatttttcatattttcacagaatttgtgCTGCTGTCGCACTGAAAACC TTGGGAATAAAAATGCTTGCAGAGTTTAATACATGATTATCTCCCAATTT GGATATTTTGGATGACtgataattttatttaaaaagcaCTTTAACTAACT TGTATGTGTTGTCCTTTCTTCGCTGTGAAAAAATTGTGTTTCCCCAAAGA AATCATCATCAAATCCTCCAAAACTGGCAAAACCATCATGTAAATCATGT CCATTATCATTTTGttcaaatcgaatgttttcaaAATCATTGTGTTCATG TTGGTGATGATGGTTTTTATTTGCATTATGAGCTCTGTTATGATGAAATT GATGATGAGCATTGTGAAAGTCTTCGTTTGCACCATGATGATGTTTGTTG TGATGTGCACtatgaaattcaaaatgactgCCAAAGAAACTGTCTCCAAA GTGATCTTCTTCAtcattaaaaaatgaatttttcccaaaatcaaaatgga aatctttaaagaagtctttaacattaaaatcaaaagaACTGCTATCAAAT CCAGCTTGATCTTTTAATCCATCCTCTCCATATCTATCgtatatttttcg ttttttctcaTCTGATAGAACTTCATGTGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068759TCONS_00068759Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068759-proteinTCONS_00068759-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:175277..186106 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CHRNA2neuronal acetylcholine receptor subunit alpha-2 isoform 1 precursor Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89 1.78 0.49 0.3 0.77 0.63 7.48 6.91 6.86 5.43 5.14 4.67 6.31 4.69 2.43 2.05 5.66 6.63 6.1 7.41 12.95 14.63 7.99 9.23 6.6 8.15 12.74 13.15 6.29 6.03