XLOC_043473 (gene) - C. hemisphaerica

Overview
NameXLOC_043473
Unique NameXLOC_043473
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_509:35073..40518+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043473 ID=XLOC_043473|Name=XLOC_043473|organism=Clytia hemisphaerica|type=gene|length=5446bp|location=Sequence derived from alignment at scaffold_509:35073..40518+ (Clytia hemisphaerica)
tcagggtattcaaaaaaataacaatgtaATACTGAATCGAAATCAAAGCA
ACGGattaaaaaattatgaataaTTTAGATGGAATAttttttgctgatgt
cagcacgGGAAGGTATAAAATGGGCATGGGATGAGACGGATGAGACATTT
CAAACACAGACGACATCGAGCGCTTGTTAGGTGAGGTAGTTTCCATACCC
CACGCAACTTTCGCTGACGATAACAACAAATATTCTTGCAAATCTATTGG
AGAATATTTAAAACAGCATTCAACCGCAACATTTTGATGACTTTTCGCAT
CGACtttgtttcaatttcacaatAAAAAAGTAAGTTTTCTCATTTCTTTT
TACTGTTTTCTCGGAACATaaaatctaattcaaattcaaattataatctt
aacggaactaatttttgcgagaaCCGATTTTCGCGGAAGTTATTTTCGCG
TGAGGATACTAAATTGGCGAAttttgcggaactaattttcaagccaaaaa
acgcgaaaattaattctgcgaaaattagttcccgccaaaattagtccCCT
TTAAGGTATAAAACGTGAATCGAGgggcaaaaaataataaacagtTTTTG
CATGAACTTATCTTTGCGAGCagcaattttttaattcaaatccCTCAAGA
TTCAAGTACAAAAATTCATTATAAATCCGATACATCTTAGAATATTTATT
CCGgtttaccttattggaactaattttcacgggaaCTATTATAGtccgcg
gtcgaaaaaaaaaaatcggaaatttttttcaaatttttcgataaaattgg
aaaaaaatgtatttCACGGGTTCAAAAACGCTAAAATCAatttccgcgaa
aattagttccagtaAGGTATTTGTCAGGTGCTATTGCACCCACATCGAAT
CAAATGGTCACAGTATAGGGTAAAATCGAGCTTGAAAAGTCTGTTgattg
ttcaatttttttgaggGGATGAATTTAGACGTTCCAGTCAGTAATTTCTA
ACTTCACTTTGTGGACTTTTATTGGAACAAACCTTACTATTCcttttttt
cctttgaaatgTCCTCTTGTTTTTCATCCGATAGGTATTTCTCCCCTTTC
ACATACATGATTTGAACCTAAAACCAAATTTGGCACCTTTTGGCACCTTT
TGGCACTGTTCGGCTTTAAAGAAAGGAGAGGTGAAATGGTAGAAATAATT
AAAGTTGCCATCATAATTTGACCAGTTTTATAGTATTTCGCCGTAAACAT
TTTCTGCAAATGAATGTACTCCGCCAAAGCTTAACAACCTTTGGGAAGTT
CAAGGAAATGTTAGAAAAAGAAAGAGTGGTATTTAAAGAGAAATTTAGCT
GGTTGAAATTGTGCCGAGGGATTATTTTGGTAATCATTATGCTTTTCTTC
CCTCTGAAgtaatttttgtgtttttctaaaaattaaatgCGCATTTTAAA
TCAAAGTCAAAGAGTTccacaaaaaaacaaataaagttGCGGGCCATCTA
ATTTCGCCAGGGGTCCAAACACAAAGGTCTTGAAATAGAGAATGAAGTCA
ATATCTACGTAATTCCCTACATGGGGCCAATAGAAATGACtaagtgtttt
taaaaacatttttgggcGGATCGGCTTGTCACAAATTAATGTGGTTTAAT
TTCCTGATCATTTAATTCAACAGTTTCAAAGTTAAAGGTCACACCTTtct
ccaaaaaagttgaaaaactaTGCGTCATTTGTTTTTAATTCCCAATGAAT
AACAAAGTAATTTTCAATAGGGGAAACCTGGTAACATTAATTATTTTCCG
GGATATCAAAGATTTTGCGGTTATATATAATATCATGATAAAAATgacaa
ttaaaattaaaatgatgAAGCAGGGGTTGCTCATATTTGAATTTGGGGCT
GGGACACCTACAGTTCAAAATGAGTAATAACTTGAAAattagattatttt
ttaatttttacaaactaaaaatagatttattactcaatttttgaagaaga
agaaaattttgcggTGAATTTCCAACTGCTCCAAGTGTAATGACCCCATG
GAGTTTTACACATGTTTTTTCTAATTcatattttgagcattttttttact
tttcaaattttagattgttattcaattatatttttgattacCCAACCCTA
CTAGcatttatacgtttttttttataagaacatccaaattttttgaagcc
tttggatgttgttaactttttgagttttaagcctaaagatattcttaaac
atgttcttattttgacaattttttgagcatttttgcccatttttctaaga
accGACTGTTAAAGACTCGACAaaacattaaaatgttcttaacttgttct
taacattttggccatcgaagccttatgctcttattagtttgttcttataa
aaaaacgtgtaattaccGTTAAAACTATTCGTGTCATGTCACTTGACTTG
TGTTTATTCTCACAAAAAATAGTTCAATTTTATTCCTTAATTATTCTTTT
AATGTGTACAATACCCTAGATTTCATTTATGCAAAATTCCTTCAATGAAA
TACCTTAGCCCATGAGCTGTCCTTTTATAAAAAGCTATGGCATTTCATTA
TTATTAGTTTTTCATAAATTGCAGGCTGCCTCTGTACCTCTTTACaagaa
acctttttaaattttactgtGGAGAATTATTAGTATCTCGACCAATCGAA
CGAGTTCTTTTAAAATACTTATGTGGCCTTTCTTATAGAATAGGAGGAGT
AGATCTCATAATAGAACTTTTAAATTAATTTAAGGTCGTAAAGAATACCT
ACTAAACAATACAaaggtaataaaaataatagTTAATTATATCAAGGATA
AATGGTgcactttttttaaacatcagAGTTATTTTAAAAAAGCAGGAAAT
TTTGACTGAAATATTATAGATgagatattttttatgaatgttTTAGTTTT
AAAACTTCAGGAAACAGGAAGCGAATCCGAGggttgaattgaatttttta
gacattttattattttatattcaAGATTCTCTGATTGCTGTGTTGAGTTG
CTTGATGCAATAAAGTTTTTAGTTGATCGAGGTTTGGTTTTGGTTTTATG
GTGTGTGGCAAAGTCTTGATTATCTGAAAGgctattcattattttttttg
actcgGTGGTTGGAACAAAATACCTGAGCATTTCATTAATAAGGAATTGA
CAATGTCCGATTTGTTTTACTTTGCAtatttttggtgaaaactttggATA
TTAATATTGTACCAACCAGATTTGTCATTAgagatttgattttttgtgtt
agtggtcaattttgttttaaaaagtaagttcatgattctctaattcgaat
ataaaagtttcagtcccttgaagatcgaactaGAGAGATCGAGTTGTAGA
TACGTAAATAttcaaaagacacgctgattttgtccctgggacaaaagaag
atttcatttttattggtagaaagaaaaatggggtgagGCACGAGAAGGCG
TTTTAGGTtgatgggatggagcatgtcacattgcaccaacgcgataAAAA
CTTCTTGTGTCCCCAAGACTTAAGGGTCCAGCCTTTCAGTACTTTTTCCG
AGGCGAAAGGTGCTTGAAATTTGCTCCATTTTACCATATATACCATCGTA
AATTTAAGGATAAGTTAAACTTAAAACACTGGATTGAAAATTTAATAGTT
TATTAAAGTCAGGTTACTCATGAGCTTCTATAATCTTTAAAGCTTTGATT
AATTAATCAGTGACTTAATGCCTTATAATACCTCTGTTAATGACTTTGTA
ATGGCCTATAATTGGATTAAGATAAAgcaatagaaaaaaatgaatcgTTT
ACTTTATTAATCCCAAGCTATTATCTCATCAATTAATNAAAAAAATGAAG
CGTTTACTTTATTAATCCCAAGCTATTATCTCATCAATTAATTCAAGCCA
AACAAAAAAGCGTTTCCTATGGCCCGCTACGTGTGATTCGAACTAAAAAT
AGATGCGCTGTGTATAGGTGATGTGTGATTTACTCCTTACTCGGTATGGA
AAAGTATGGGAAATTTtgaaagtcattataaaaagggGATCTAAAATTAG
CTTTTGGGAACACCGCCTTCTATTTTGAGAAGTTGCACCGCTTTTGAGTT
TCCGATCTTGATTCAATGTGGGTGCAATAAGACCAGACATAATACACCGG
AATAAATATTCTGAGATGTTTCGGATTTATAATGAATTTTGCACTTGAGT
CTTGAGGCATTTTGAATTTGGAGTCAAACAATGTGGGACTCATCTTGAAA
ATCATagtataaaattttaaagactGAGATTGAGATTATATCAAGCCCGg
aaagctggcacacaacattgtttcaacgttcatctaatcaCACAACATGA
TATAACGTCCATGTAACATTaaagataaacgttgaaacaacgttgtgtac
cagcttgGAGGGTAAGCTTGGTTTTAATCCATAACAAGAAAGGCGTGGGC
AGTGAGAGTTAAATGTTTTTGACATTATTAAGAGATTATTCACGCTTTGA
CTAACCGTCTTCTTTCATTCTTTTCTTCAGGTATTGACTCAAGATGATTG
GAGCTACTCAATCAACAATTTTGACACGATCATTCAACCTTCGAATGATC
TTAATCACATCTATTTTGACAATCGGTCTATTCACCGAGATATCCGTCGC
TAAACCGACAACAATAAACACCGACGAAGATTTAACGACGGCTTTATATC
AAACCGATATCGGCCGACAAATGATTCGTCGACGCCAACGACGTAGCATA
GAAGCGTGTTATGCTGAATGTAAAACGTCAGAGAAAATTTGTTACGATAA
TGTAGAAAATGACTCATTCCAGGAGACCCTTGTGTGCATGCAAGCCACAG
ATGGCTGTAAAAATGATTGCGACGCTTTGGCTGGCAAAAGAAGGAGAAAA
CGTTTCGTAGATGCATTGAAAAGTTTACACAGTCACCACTTGACGCTAGA
TTCTGAAATGCAATAATTGCTTACGTCATCATAtttgaactttttagaaa
tatatttttttgtatattgCGGCATTGTTATCCGAAACTTTTTAAAACGT
TGATCCGGGctaatatgaaaataatttcatgGGTGCCCACGCCCTTTGAA
CGCCTTTACCACCTTAAGTAATTTGGAATTTCTGCAGTGCTAAGCCATAA
TTTTCTAAGTTGAATGAAATTTACTCAGGCTGTGGCTTTGAGAAGAAAAA
TTGTTTCATTCAATTTCAATATACAATTTCAATATATTTGAAAATCTGAA
TTATtctaaaatatatttatttatagacaaaaaattattaattaatttat
gaaaatatatttatagttttgttaaaaatatttctagaaaaagtaaaaat
cctttgtaaaaaatatatacagtcactctgacctgaaaGAAGAACT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069817TCONS_00069817Clytia hemisphaericatranscript
TCONS_00069818TCONS_00069818Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00069817-proteinTCONS_00069817-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_509supercontigscaffold_509:35073..40518 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.2	2.74	0.68	0.47	1.38	0.9	1.14	1.57	1.34	1.65	1.04	1.23	13.76	10.41	1.14	0.81	2.61	2.77	8.67	14.93	1.35	1.32	3.4	3.32	1.35	2.06	1.03	1.02	1.5	1.57