XLOC_043698 (gene) - C. hemisphaerica

Overview
NameXLOC_043698
Unique NameXLOC_043698
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_514:165239..170468+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043698 ID=XLOC_043698|Name=XLOC_043698|organism=Clytia hemisphaerica|type=gene|length=5230bp|location=Sequence derived from alignment at scaffold_514:165239..170468+ (Clytia hemisphaerica)
AACATATTCACAATGTAAATAGATAATTTAAACTGATATGTTTATTACta
cgtcataaaaactgcacTCCTACAGAAAATTTGCACTTCTCCTAGCTAAG
CTTCTGCAAAAAGGCTGGGACCGAGCTCGAAAATAGTATAAAAAGTTCAC
CTTGGCTTTAAGTTATATCAACAAATTCAGTTTGCTGAAGACAACGATAA
CGAAATGATGAAGCTAACACTCACATTTGCCTTGGCTTGCTTAGTTGCAA
ACGTTCTCTGTGAACACCATACCACAGGTTCGTCatgcactcttttttat
aaacatACGTAAAAATCAGGTCAAGGctcaatatgcttagcaaaaaatca
ttttcagccttaatttatgcttatttatatgcttcgatttgttgattttc
ttttacttcatgaaaatttctagtcggaacattgattcggatcaaagatt
tcaatttttttctttgtaattttgggGTAAATCTTTGGTCCAAGATAGCT
CAAAACAGACAGCTTGAATACAGCTTACacgaatttgaaaaaagtgtatt
atatttttcagcaaaagtgaAGCTGCCTACTTAAGCTCTTAATAACCCCA
TTATATCTTTGTCTAGCTTcagaatttcttttcaaatcccTGCAACTTTT
TTACTTCTCATTATACACCAGAGCGACTATTGTATTTATGTATGACTTGC
TCTCTCAAATTCTCTTTTCATCATTTTAGTTTCTACAAATACTTGTGTAC
CAGAATGTCAGAATGGAGGAACGTGTGTGAATGGAGAGTGCGTTTGTGGA
CCATGCATGCAAGGTGCTCTATGTGAAATCGGTAAGTGCGCCAGTATTTA
TGGAGCGAAGGCCAATTGGACAAGggcgtcagcgtctcaaaccagaGATT
CGCGGTTCGagtccccgctccttccaatgttccgatcagttcatagatag
ccgagcctgCTAgtcgtggaccccgtgaaaacaatcgaaagactgtctac
aAGTCCTAGGTTACttggctatccacgtaaaatgtCGACTCTATGTATCT
ATTTactttaccttaagggaagagtTTTCACATAATTTGATTTCACTGTG
TTGGGTGTAAATCGcgactttaaatttcatgaaaGGTAAAACTGTAGTAG
TGTATTCAGGAAGGAGGGTGAAAAATAAGTGTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacaccggtttgtac
aggttcaaataccggcaaaatgacaaaaaataaggccaaataccgtcacc
gtctgattttaaaataccgttttcccgtcttttttttcctcaaatccgta
aaagtacaaaccccccccttcattcattttgtaaaaataaagtaTCTGTG
CTCCCTACTAAAGAGTAAGAAGATTCTtgctaaaattttattaaatatcA
AGTATTTTTATGATTGCAGAAACTTGCAAGAAATTCACTTTACGGTACGA
GAAAACTGGAGAATGCATTGGCGTCAATGCGCAGAGCAACCTTTTCTTGA
CCAACAATTGCGATACCCTCTTCACTATCGATGATGATGGCAAAATTAGG
GACTTAGAAGGCAAAAGGTTCGTATTTATGAATTGTTtggtttttgttta
tgttttgaaaataattaatgttttgttttcaggATACCCAATTTAGTCTC
TTTACTACTTCTCCGGTGTTTCTGCACAAACGTTTGAAGCTTCCGCTGAA
CCTCACTAAATTTAGCTTTCTCTGATCACCGCTTATggtaaaaagcttaa
aaacttGAATTTCTGGCAGTGGTGCTCAAATAAGGACCCTAATTTGCGGC
CCTTAATGatagtttttttaaaaaaaaggtcaTGAAAATGCTACGTAAAA
GTTGCCAAAGCCTAAATCCAAGGTGCACTGTAAGAGGTAAAAAATTCAAT
AGAGAATGGCTGAAAATACGCTGTAACGGTCCAACTTTCTCTCTTTTTAG
ATGTTTCAATGGACCAGCATTCAACTTCAGAATGAACTTTTTAGTTGCTG
TTGATTGTGGCAATCCTGGTACTGCTTACAGTACCACCAAAAATGGTGCT
TTAATTCAAAAAGCTACTCAAACATGCGTCACACCTTTTGTTGGTATTTT
GTTGGTCTTAGATAGAGCTTGTCAAGACGTTTTCAAATTCGATCAAGGTA
AATATAATAACACGGTAATACCAAAATGGGTTTCTGACGAGATCAAAAAT
CAATGTTTCAGAATGATTTTTTCAAGTAGTTTTGCCGAATTTTGATTTAT
AGTCGCTGATAAGCCATTATGTCGTAATCTTTAGCGTACATTGTGCCCGA
AAAAAAGCAGAAATTAATTAATATAATGTAAATCTTCATAATTTATGGTA
ATGTTTATGTCTCAATTACTTGATTTCTTTTCTTAAAGGCCTACTAAATT
ACCTTGACAATAGTATATCTATTGACTGAACAAAGAATCTCCATCTTATT
GCAATTATTCCAAACTGAGTTACAGGAATGATTTTGAGGATTTTCATTTA
TATGAATTCTATTCTGCTTTTCTCCGGGCACTCTGTATATCTAGTAGATG
AGCTGACCGCAGAATTTCATCCTTCTTTTTTTAGCGAGATGTGATAAGCA
CAACCCCTGTGAGAACGGTGCAGAATGCATGCAAGAAGGTGATAAATACA
CGTGCAAGTGTAAACCAGGATTTAAAGGATGCAACTGTGAAATTAGTAAG
TTCTGAGATTGCAGTCGAATCTCTGTATTTTGATCTTTAAGggacaaaaa
attttcttctttatatTAGAGGAGGATTTGAATTACTGAGAGATTCTAAA
GATTTTTCAAGCTGAGAGAAATATCGTTTTATATCGAATTTCAGAAAGAC
TCAAATAAAGGCTTCGAGTAAGAAAAAGTTGGCTGTTTTCCTCCTAGATT
ATCAATGGGGCGTATTGAAATTGAACCTACAATTACACCCCAATCTCAGC
TCCCAAGtgtttttctgctgttttttttcACCAGGAAGCCCGAGATTATC
CTAGAACATCTGTTTATTAGAGACCTGTTTAAACTTAACGATTAGCACGA
GCCTACAATTCATAAATTCTTTATAGACATTGACGAATGTGCATCCAACC
CATGCAAGAATGGAGCAACCTGTATTGACGGTATCAACTCCTTCACCTGC
AAATGTGTCCCAGGATACACCGGAGATCTTTGTGAAACTGGTATGCCTTT
TCTTTAATGACTACATTTATGGAAATTTATGACGTAAATCTTAACTAAAA
TTAAgatgaaaacatcaaaattcattgtcGCAGAGGATCtgttgtcattt
ttttttctaatttgagatttttcaaaccgaacGCTACGACGGAGTTCGGT
TCaaagaggggagacgatgaATGAAGTGTTGCCATTTATAAATCATATTT
catccgtacgggaattttattatcaaacagacaatgcgcacataGTCAAT
AAAAGGACAAGCATGAGATAGATAGACACACTCTGTTATGAAATTCACTC
ATCGTCTTCTTTCATTCCTCAGACATCAATGAATGTGCTGGTCATCCTTG
TGGTAAGCATGGAACATGCGTGGACTGTCTTAACGAATTCAAATGTGTAT
GTGACCTTGGCTACAGTGGAGAAACTTGCCAAACCAAAAAGGGTAAGTTA
CTTTCTCAACCCCGGTGTCAGGAAAGTTTTAAGCCTCTCCGCTTTTGGGC
GATTCAAATTTTTCTACCATTTACTAGCGAATTTCAGCTCATGTTAGTCT
TCAGCTATTCGATTTTTATGAATGTTCCGTCGTCCCTGTTTCTACTTTTA
AGATACATATATTTACGTACaaatagttttttaaattttatttttgacgt
ttttgaccCTTATTAACACGACGTTTTGGGCGCAAAAACGACCCCTAGTC
TCcacaatttcttttgaaaaattgcgcCTGGGATTCATTTAAGGTACAGG
TTTACAATGAATGCACCACTTTTATGATGGATGCATTTTGAATTTCCTCC
CTCCTTTTTATAGAGTGTCACATCAAATGCAGTCGTTATGCTAGAAGAAA
CTTCAATCCGGTTTGCTCTTCCGATGGCCGAGTATTCCGAAACAAATGCG
ACTTCCAAGAATACAAATGTTTCAAACATGGAAAAGTGAGCTCCGTTGCA
TGTCACAAGAAATGGTAAATGACTAAAAAACGTCGTctaactaaaaatga
aaactgataTCATCTATATCACCATCAATATAGGATAATCATCATAATGc
acactttttttaaacaatcctCTAATTACAGATTCAGGGCTGAGATGAGG
TTGCTATGATGGTTTTCGGGACATTAGCTTACAAGTGTTAAAGGAAAAAC
ACCAAGCTCTTGGAATATTTCTTTATGTCATAACTGAAATAttagaaaat
cttcaaaaagttttttgatgccAGAAATCCCCCAAAAGTAAAatcccccc
cccttcttaagtATTTTGAGTTACTTTCAAAGCTAAAGTTGTTTAAGGTT
TTAGGAAATTTTCAGGGCGTAACCTCTCATTAGCAACTCATTTATTAGCA
TATATGTAtcattttttacccttttttttttaatattttaacacttttta
atgtttttatcttttttaatatttttaacctttttaatatttttaccctt
tttaaCATTATCATTAAGAATCTTGAACAAAGCATAAAGGCCGAAAATAA
taattactcattttttctgtttgttactat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070167TCONS_00070167Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070167-proteinTCONS_00070167-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_514supercontigscaffold_514:165239..170468 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
ITGBL1integrin beta-like protein 1 isoform 1 precursor Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.52	1.97	0.2	0.46	0.49	0.92	0.05	0.67	12.81	107.29	818.72	261.8	46.07	16.22	0.17	0.15	0.04	0	0	0	0.02	0.02	0.19	0.1	0	0