XLOC_043872 (gene) - C. hemisphaerica

Overview
NameXLOC_043872
Unique NameXLOC_043872
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_56:457969..463591+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043872 ID=XLOC_043872|Name=XLOC_043872|organism=Clytia hemisphaerica|type=gene|length=5623bp|location=Sequence derived from alignment at scaffold_56:457969..463591+ (Clytia hemisphaerica)
ttgaggGAAATACAGATATACTCAACGAAAGGCATTAAATTAATACTGAA
TTAATGCAGAATTTTTTCACACGTGATGTAGAGAAGAGCTgaatttttga
agatattttatttcatcaacatcaatcaatcaaaggtagatttatttttt
aattccttccattttttcatcaaaataatttatttttaggTAGGTATTAT
ATACCTCTTGGGACTATTAGTTAGAGTAATTATTAGAGTTTAGGAGGATT
TCACGAAAGTCTTTtcatttcacgcattcacgcaagtttttccaattcac
gcattcatgcactttattttcaatttgcacgcattcacgcaaccaaaaaa
tcccattcacgcaaaccactggggCTGGCAGGGGGCTCATTTTAGATTAA
AAGACGACTTTTGCTGATTGGGACCCAAGGCTGTTTACCATATGGTGATG
tataaaaaccggaacgctgtTAGCGTAGGGCGGGGATGTAATATGCCACG
CTACTTAAATTATTTAAGCGTTTTAGAGAGTTAGAGCTGCGGCTAGATAA
ACACTTTTAGTTTAACGTTCAAACATTTTTGTAGAAAAGCAAGCACAGTG
TTGATAGTGGtgattttataaattttccaaTTACTGCAAAAGCAATAATA
TTTTGGTCGCTACGTATTGAATTTGCGCATAGAATTCAGTATGTAAAATT
ATGAATTCATGTGTTTTTTTACGATTTTAAATCAGCCGTACGGCGTTTGT
CATGGTCATTTCATTTCCGTCGGTGTCTTTTGTAGtcaaaaaatcaatga
aaaacataaaaatgtgATACTCCGTGAAAATCCAAAGTAAAAATAGCGCG
GTTACGGCTTTTTCAAAGGAGGGCATAACAAAAGAGGGACGCAGACAAGA
GAATTATTCAATTATGTTTAAACAATGTATATGTGACAAACCAATAATCG
AATCCATTAATTACTaataattattttattcaaaagaatttaaattggtt
aatttcaattgttatttcattgatttcattaaaataattaaaaggttttt
ttagattctaaaattgaataattaaataGATATTCTCCCCGGGTCaagtt
tataatttttttggaaaatttttttattgaaaagatagcgaaaacaataa
tttcttttcagtcaattttttgtgaaataattTGCGAAGGGAATATTTTT
TCGTAATATTATACATTTCATAATGAGATCCAATTGATTCGCAAAAAAAT
TACCTTGGATTCAATATCAAAATCTGGTTTCCGTTTCACAGGGCGTGACC
Tttcgaaaattctgaaaaacagaaatttttaaaaaatcacaaaaaattta
aaaatatgagaatattctttttattaaaatttaagataaattattaaaaa
tacatACAAGTCATAAAGagtagaattaaaattttgaaaagtcaaATCTG
AAACATTCAATATTGAAGAGTCTTAACTCCCTTTTAAGCAATTATTGATA
TACGTAAAACATCTTTCtaacggaaacacccgaaaaaagccGGAATTTGA
CGCCTGTCtgttactaaaataaaaacacgaTGGTCAAAACCTGGCTTTTT
CCGGGTGCTTCCTTTAGAAAATATGATGTTATCTTGACTTGTACATACCA
AGAATACCTTCAAATAATTTTGACAAGTAATTTAAGTTAAGAGGACTCAA
TCTTCTTATAAAACATGCTTTAGATTTTTCTGTATCATACTTTAAGAATA
TCAAATTCGTCTGAGTTAAATAAAAAAACGCTTAACACGATTTCACGCGA
TATGCAATGTGTCACACGGAAAAACCACTGATTGCAACAATGCAACATCT
TTATATGCTAAATCTGAATGTTAACACAtttaggaaaatgaaattgaaat
tttttaatcgttcctatcctaaaattgactttttttaaagtcTGTTGGGG
AGCCCCTTGCAACGTGTTCCAGAGGGAAAATGGGCGAAGAGAATCAAGTA
AATTCTAGCTCCAAATGAATTAAACTAAAATCGGATGGAATTATAAAATG
AATACCTTCAATTTCAACTAGTATCAACTTTTAAAGGGATTTTGGTCAAT
ATAGTTACCACAATCTAATAAAAAATCATGACCTTTTACTATCCATTAGA
CAAGTGTGTGTGTGCGAACTTGTAATAAACTTTATTTTAAGGAGTTCATT
CAAGGAGTCCCAGCAGATTGTTGAGAACTGGGACACATGAGCTTTCTCGT
ATTCGACTTTAAAAtcacgaaataaattcaaaagttaACATTTCCGATTT
TGATTCGAATACGCCGAGGTAAACCTTCATTGAGAAATCATTTAACGGTA
AGAAATTGGtttctctttaactcgaaactctataatttgaatgtcacctt
aactcaaacaagttttttCTGGTCccttaacaatgccttataaaccttac
tccgaCCCGTGACTTTTCGAGTtacatttgttgatatttttaacACAAAT
CTGCCCTTTCAAGTAACAAACCCATATAAACAAGTCGAATTTTCCATAGC
TGGAATATATACAATAAAAATATAACGTAAATAACTTGAAAACTTTAAGG
CACGATTTGAAAGcgagttaaaaaacaccaaatagctcgaaaagttaaag
gcacgatttaaaaccgagttaaaaacaccaaataactcgaaaagttaaaa
gctcaaaaacaaaaactagACTTATTATTTTGGGATAATCTCTCATACTA
TATTCTGTTTAAACTCTACTACCGATAATGCAAAATAAAGttagaaaaaa
acaactttaGGTATCATAAGGTATCATTGaatcaatttttcttaaaaaaa
aatagggaaaaattaTAGGGAAAAATTAGTCAATGAGACCATTCGACCTA
GAAAAGTGgggattcttataaaataattgTGTAAGAACTATAtacgaaaa
ttttctaaatattcTAAGTTGCAACACCTTGATAGAAATTCTCTACTCAG
TGCATTTCGAGTGTGAAAGATTATATACCGCCAAATCAAGGTGGCATTAG
TCATCTCTTAAGTTAATGTAGTTTTTTTCGTTACGATAATACAGGTCttc
attgttttttgtttttttttttcgttaagATTGTTTCCTTCTTCAAGCAG
agattcgaattttttttaagttatgGCAATAACAACTAGATGACATGATT
TTTGCGacgaaaacaattcaaaactgCTGTGGCTAACATGACCTGCAGGT
ACATGACCTGGAAATGACCTCCGTCATTGCCAATTGGCTGTTACCAATTT
TGGACGACTGTTAATCGNACCTCCGTCATTGCCAATTGGCTGTTACCAAT
TTTGGACGCCTGTTAATCGagtctttctataatttgaatctctcCCAGTG
TTTGAACAAATTAAAATAATgaagaattatttttgaaagcAGTTATGATG
CAAACAAAGACTCTTTAAACTGACCAGACTAGCgcatttgaaaaattgga
aaaacgtCTACAGACAGCAATATTTGTGAACTATttcaaaatgattgaaa
aacctttcaaatattttttttagaaaatgtgaCATGGCGGCTTTTAgtac
cgttggaaaggtatttttataCTTTCTAAACCATTTGGTACAGCCCTTTG
TCTTTCAATTAAgtggtcaaaagttatgacttcaTGTTTCCAGTATATGA
TGggtttattgaattttgaatatatttctttttcttaacCTTACAATATC
TACCTTTTTTTCCTTTAGATTTCCTACAAATCTGCTGACATCAATCCAGA
AAACACCGTATCAAACGAAGCAAACAACAAGTCAAAAAACAGGTGTTACA
CTTTGGAAATAACAATAGCCACAGATATTTCCGACAAATTTCTCAACAAC
TATTTCAGAAATCACAAAAGACATCGAATTAAGAAAATAGCGAACCAACG
TCTATGAAGCGAGTCCGCTCAAAGAATCTATCAGTGAGCAACAAAGCAAG
AAGTATGGAGCATACACCACAAGATATGCAAGAACTCAATGAAGAAATGT
TTTCTTATGGCATGGAGCATGCACCACATTCACCATCAGACCATCGGCAC
CGTCACGGCTCCACCTCGATGACCATGCAAAGTGACTTTTCAGACGAGAG
CGGTGTTGACAAATCGGATAAAATCAAACGCCCTATGAACGCCTTCATGC
TTTGGTCGAAACTGAGACGTCGCGAGATTTCCAAAAATGACCCCACCATA
CATAACGCTCAAATCAGTAAGCTGTTAGGTGAAGAATGGAAGGTCCTATC
GACAGAAGACAAGCAACCGTTCCTGAGAGAGTCACAAAAACTGATGGCCA
AGCACAAGAAGGAGCACCCCAACTATCGATACAAACCACGCAAAAATAAA
CAAGAGCGAGGTCATACATCAGGAGGTGGATCATACCATCAGAAAGCTTT
CTCCTTACCAAGCCAAGCTAAACCGTATATGAAATACTCTTCACATCACC
ACCATTACAGACCATCGCAATCACGTTCGATGGTGGATGATCGTAGACCA
CCCTCACCGCCCACACACCACCCGGTTGTTTATTATCAATACCGTAAATG
TCACGTACCCGGTTGCTACGATTGTGAATATCAACGCGCCTATGAGTCGC
ACGGTCCAAGTCCGCCATCTTTCTGTTGCCGTGGTAGCGGTTATGAAAAA
TCGAATACGCATGCGTCGAGACGTTGCATGTGTTGCTCTCCACCACCCTA
TCACCAACCCACCTGCATGGGGTGTAACCGCCAAAGCCCACCACCACCCT
CCTCAAATCAGCAACGAAATAACAGCTTTACAGTTGAATCTCTCATCAAC
GATCGAGGCTATAACTCATCTGGTAAATCGACATGCACTAGCTCGTGTTC
CAATGGATCGACGTCACCAAGCACCAGCCTGAGATCGTCAGCAGAGAATG
ACACAAAGGGATCGGAGGGGTCTGGTCCCGAAGAATCTTAACTCTCAACA
AACACgaattaaaaatgacaaaatgttATTGAGTCTGAAACATTATGAGA
AATTTgggtgtaattttttttgttcttttttatagcGGTGTATATTATAT
TAAAAATAATCTAATTTGGTTTTAAGATTGAAATATCAGATGAACGGTGC
TTACGTTGCAAATGTTCATTTGAAAAGTTTTAGAAATTCTATGATTTGAC
AAATATTTACTCAAATTAATACATAATGATTTTAGTGAAAAAAGGTGCCG
ATCATAAAATAAGACGTTTCTGTCTCAATGTGTGGGAGTCATTTGTTTTA
GTTTAATAAAAACCGATGatattggaggataattttatCTATTCAGCTTT
AAATGGGGATGATGTTGTCATTGGAGACTATTTTTAGCCCAATTTTCCAA
ATCTAGGAGAGGTCTGGGTCTGTGATACATGGGGTGTAAAATGTAACAGT
AATAATAACGTATTACAGGCTGGAAAGAAAATATATCGtctaatttatta
ttttttaaatgattttaattgtacataattaacggtaattttttttaacg
aAATCCAGAATCAAAGGAAAACTTTAATTGCTTTACTACTCATAAAGATA
TCAAGTATGCGTTCTAAAAAACA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070453TCONS_00070453Clytia hemisphaericatranscript
TCONS_00070454TCONS_00070454Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
Sox15 proteinTCONS_00070453-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:457969..463591 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.02	0	388.88	299.95	47.25	43.3	3.32	8.59	1.37	1.44	0.01	0	0.01	0	0.63	0.67	0.02	0	0.66	0.59	0.19	0.3	0.18	0.18	0	0	0.02	0.02