XLOC_043887 (gene) - C. hemisphaerica

Overview
NameXLOC_043887
Unique NameXLOC_043887
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_56:7970..17781-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043887 ID=XLOC_043887|Name=XLOC_043887|organism=Clytia hemisphaerica|type=gene|length=9812bp|location=Sequence derived from alignment at scaffold_56:7970..17781- (Clytia hemisphaerica)
TCACCCTCCTTCTTGTTTGCATCATAGTCACTAGAATATAGGTATTCAAT
TGACATTGTTGTTTACATGTACCATGTGATCAGTGATGACTGATGGGAGA
TGAGGTACCTCTCTGTACAAGGTAACAACAGTCTAGTACTATTTAACCGA
GCAAAAACTTAAACTATCGTCCGTCAATCGAGAAACGGTGTAGCTCCAAA
CCTGTTTTTCCAAGGTTTTTGCTTTCCCGTTGGACGCCTCTCGATCAAAG
AGCGTTCTACTTGATCGGGAAAGTGCTAAGCTAGTAAATTTTAACTTGTG
CCCGTCTTCTTCTAGGAATTCCTAATCTCCAAACAGCGACTGATACTCCA
CGCATGGCACGTAGCCATCATTAAAAGGATCATTTTGAAAAAAAGAATTT
TTGAAGTTTTGTATTTTGTTGCTGATTTTATGCTGCTGAGCTGAAAACTC
GATCTGAAAACGACCATACGTTCAGCCCAAAATTTGGCTTCTAAAATCGG
ACCCTTACGGTGCAGTGAATTACCATGAAAAATCATACCCTTACAGTGCA
CTATTTCAAAATTTTTCGCCCGTAAGGGTGAAAATTTTTGCAATTTTCCT
AGAAAATGTGGAATTTTTCCTCCAATATTGACCAATTTTGTGCCAATTTT
CCCAACAAATTGGCCTTTTATCACAATTTCCTACCCTTACAGTGCAGTTC
AGGTGCAGTTTTGTAATTTCCTACCCTTACAGTGCACTAGCTGAACTATG
AAAAACCTACCCTTAAGGGCCGAACGTCTGGTAGGTCATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCCTTAGAGTGCATTTCCCCCCAAATTTTCGATCCCTTTCGTGCAA
AAAATGGTCAAAATTCTAGCACTTTTGGTCAAAATATCTAGATTCTTCAA
GACTTTTCTGAAATTTCTACCCTTACAGTGCATCTCTAGTTTTTCCGACC
CTTACATACAGTGCATTTTAAACATATTGCAAAAGGTACCCTTAGGACCC
GCTACTTTTTCAAAGATGTCTGATGAATCAAGCAATATACTTTATCAACC
AACTCATAGACATAGAATCTGAGATATAGAGTCGGATGAAGGAAATTGGT
GAATGTGAAAAAATCGCGTAATAACTAAAACGTGAAACGTCAGAGAAACG
GGTGGAAACGATATGGAAACGGGGGGAATCGCCCTGGAAACGGGGAGAAA
CGACAGGGAAACTGGTGGAAACGACATGGAAACGGGGAGAAATGATTGGA
AACGGGTAAACAACCAACAGTGAACAAAGCTTCTGTTGTATCCTTAGTCG
GTTCCCGTCGTTGCAAACGGCGGTTTAGCAAAGCCCTTAGGATGATAAAG
ATGGTATTGTTGATGCTCTCAAACTTTATTTTTAAGGGGAATTCGAATAA
CGGGAGTACATATCATATCGTAAATATCATTTTATGCTTCAAATGGAATA
ATAGATAGAATGGGACTTCTTCACCAGAAATAGCAAATAAATAGTAAATA
AAAGCTTAGTAAATAATAAATCTTCAATTGTGAAAGTTTCTTCAGTACGT
TTGAAAGCGATTTCAATTTGATTTTAATCGAAAACGGGAACTTATTGACT
TGGTAAGCAGTAAAACGTCAAATTGAGAGCGTCAATATGCATCAGTGTGT
AAGAATGGAAAATATATAAAAAAATGTTGCTTGCTGTATGTACGAATTTG
AGGTCGACATGACGCGCCTTAGAAGACCAAATAATAACTGCATTTTCGAA
AAACAATAAGATTTCTTGTTTTAAAACTGCACGAAATCCCTCTTTCATAC
TCGAATCAACCCCTTGGCAATTTTTCATAAACTCGCCGAGGAGTAGATAA
GCTGAACGCATCATAAGCCCTTTTGATAGTAAAGGGGAAACTATAGACTG
AATTAATCCCAAAGAACGAAAAATTGCCACTTAAGATGGTTTAAAATTAA
AGGTATGACAAATTTTATGTTTTGTTACGTCATTTGGACTCTAAATGATG
TCATCGAATGTGCAATAAACTTTTCACTCTACTGTAACTATTTCTTCATT
GACCAAATATATGCTCATGATGATTTCCAATATCGCATTTTGTGTTTTGA
AGTTTTTCCCAAACTTGTGACGTCATTGGGACCCGTTCTAATGTTGTCAA
CGGTCAATTCAAGAATTTTGAAATTTTTGTGGTCAACGGGTACCTTAAAG
GAAGAAATTTTGGCGGGAATTTAATTTGGCGGATGGCCAAAAAAGTTTTT
TCAGAGGGAATTTAATTTGGCGGATGGACGAAAAAACTAAATTTGGCGGG
AATTTAATTTGGCGGATGGCCAAAAAAGTTTTTTCAGAGGGAATTTAATT
TGGCGGATGGACGAAAAAACTAAATTTGGCGGGAATTTAATTTGGCGGTC
GCTAAAAAATTTAACCTTAAGATGGCGTCAAAACAGCGAAAAAATAGCAA
AAACACCTTAAAAGAGATCATATTTTAAAAATGTTTAATTTGGCGGGAAT
TTAATTTGGCGGATGGCGGAAAAAAGAAATTTTGGTGGGAACTTAATTTG
GCGGATTTCAGTCAAATCCGCCAAATCCGCCAAATTTTCTTTCCACCAAA
ATTTCTTCCTTTAACCCCAAGGGTCCCAAAAAAACAAAAAACGTCAATTA
TTTCCACGGGAAAGTGGGTTTTTAAATTCGCGAAAGATTTGCACTGCAAT
GACTTTTTCATAGATTACCTATATCCGTATACTCTTACGGCTATGCGAAG
CCTGTGATAGACGCAGATGTATCTTAATCCTGGGCTAGCGTTACATAAAT
TTCCGTATCGTTTCCACTGGTTTCCACCCGTTTCCATATCGTTTCCGTGT
CGTTTCCACCCGTTTCCGTATCGTTTCCACCCGTTTCCGTATCGTTTCCA
CCTATTTCTGTATCGTTTCCAACCGTTTCCACCCGTTTCTCTGACGTTTC
ACCTTTTAGTTACTACAAAAAATCGGTGAGTGAAAATGGCTGATGAAATG
GTCATAAATAACACGATTTGATTTAGCTCCGAAATCTTTGATATCATCAA
TTCCTCATGACATGTAATTAACGTGCAAATCGAGATAATTCCATTTTTGG
ATCAGGAATTTTAATTTATTTTCTACATTTCGTCGCATGAATAGAAAAAG
ATCCCAACTCAAGCAGGAAAAGTGTCATCTGTTCTGTGAAGTGATTAGCT
TTTTTAAAAATCTCTGAATGTTTCCAGCTTGAAATCTAACTAGCTGGCAT
GCAAATGAATAAGAACAGATAACTTCAAAGAAAGTAATATTTCTGATCTG
TTCTAGGATCAGTAGGATTGAAAATACTTTCAGTTGGTATAAGAACAGAT
ATCTTAACAGGAAAGTCGATCTGCATTTTTTTCTTCAGAAAATTAAAATT
TGAATAACTCAGCCCAACCTCGTTCCCTGCGTATTATCAGCTTTTTTATG
CTTACTGATGCTAGACGGCTAGATAATACCCTGGCATTGTCTGCTTTTCG
AACGCGTAAGATTACGTAATTCAAAGACAAAACGTCAGATTTCATTTGTT
CCAAGCATAGAATATGATTTAAGGGCTCTGACCATAGTGAATTTTTCATA
ATTTCCGTGTTTAAAATGTATTTTCTGACTGATGTAACCAACAAAACTAT
GACATGTTATACATTTTCTGTTAGACAAACTGTTCCTGAATCTGAAAATT
TAAAGATTGCATTGAAAAAATTTGATGAAGAAGAAAATGAAGACTTTTGC
GACTCGGTTTCTAAACGACGGCATGAGCCGCCAAAAACTTTTTCAAAATC
GGACCCTTGACCCTTACACTACAGTGCATTTAAAAAACATTTCTAACCCT
TACAGTGTAGTTTGACTGCAGTAGCTAACTCGAGATATTGAGCTTCAAAA
AGCGCAAAAACTGGACAAAACAGCTTTTTCTGTCTGAACAACACTGTTTT
TAAGGGTTAATATCTTGAGTTGGATACAGAAATCACCTATACTTGCAATA
TATCTCTAATCTTAATTTTTGAGAGCTTTCTTAAAATATACAACAGGTCT
CCGTTCTTTCAAGCTAAAATTTTCATGAAAATTTTCATGCCTGAGACCGT
CATATTTGTCCGAAAATCACACCAAAGTGCCCGATAAAAATTGGAATCTA
AGTTTATTTTGATTCTCCTATCCCATAGCTTTCCAAAAATGTATAACAAG
TGCTTTGACCGAAACAATCGAGCAATTTTACAAAATGCCCTCTACTATAA
GCTGATACTTCCGATAAGCTGACTCATCTCAGGTTACAGCTGAACCTCAT
ATTGCATAATCACAAATCATTTGATTACTTTTTGTAGGAAAAGTTTATAT
TCTAATAGACAAGACTTTGAAAAGGCCAAACATGTTATTTTTTGCTGTTT
TTTTTACAGTAAGGTTACCTTTGCTTGCCTGCGCCGGTCAAATTATTGCC
AATATCTCAAAGGTTTGAATTTCAAACTATAATCTTCTGTTTTCGAAATT
CTTATAAAAAATTGGTACTCATAAATCTTTAACATAACAAACTCAAACCT
CAATCGATTATATTCCATTTCAGAGACATATAACTGACATTTATTGCAGT
TTGGAGAATGGTAGACAAGACTTGTATGTGTCAAATAAGAACATGGACAC
TTTTCTTAAGAGTTTTTTCATAGTTGCTTTAAGTTGTATAGTTTTTCAAA
ACAGAGTGCATATTAAAAAAATCAGCGTTCAGCTTTACGAAGAACATTTA
AAAAGTTTTTTCAAGGACCCGACTTGGATTAACAAGCTACGGGAAGAAGA
TATTTTCGAACTTGCAAAGATAAATTTAACAAGAGCCGAGGAGAATGAAG
AAGGTTTTCAAGAAGTCTCCAAAATACTATACGATGCTTTTAAAGGTAAA
GATCAGTTTTCGGTACACTAAGACCAAGTTTGCGTCGGTTAAATGGACGA
TGCAATATCGTGATGGAACAATTAAGCGACGGTAGTGAGCACGGAATTTT
TAGATTCGTTCTATTTTTCACTAAAAAAGCTTGCAAAATCCGGCAAAGGA
GTGCAAAATAAGCAATATCTACTGAAACATTTGACACTTCTCGTCTTTTG
GTGCCCCCTTTCTACCTCCACTTCTACCATTAGACTGGAGCAATGGTGAA
TACAGCTAATTTTCAACTCCTATTTTCACCATTTTCTTTTTGTCAACAAA
AGGGGTGTTGATATTTTCCAATTTTGACTTTCCAGTTTTGACTTCCTTAG
GTGTTGGATTCGCATATGTTGTCGAACTAAAGGATTTCAATCCGGACGAA
CTGTTATACTGGACAAAATGGTTTTTCAATTTGCCACCCGATGTAAAAAA
AACAGTGACCAAAAGTACATGGCAACCTGACAATGCGAACACGTATAGAG
GCTTATATCCAAGTATTCCTGGAGGTCATTCTCATAAGGAAGCTTTAGAA
ACAGGTCTTTTCGATATGGAGGAGCCATTAAGAAGAAAAGCCACTTTGGA
AGATCTTGTAAACACAACTAAGAAGGATGGAAAGTAAGTGATGTCTTTTA
GTAGGTTCGTCTTGCAAATCCTGCCTTTGTAACACGCATGCATAAATTGT
CGCTCTGTTAAACTACATGTAGTTAATTCCCGTGTTAAACAAGGAGGAAT
GAATCCGTAGGGGTGTTTCAGTCGATTTCGGTCGGGGTTGTAGACGACAA
AATTTGTCGTTCTTTATGAAATTTGTCGTTCTTTTTGTCTATTTTTAGTA
ATGCAGAATTTGTTACATAGACCCCTTTCTTTCGATCACACCCCTGTCTC
AGCACAAAAGGTTCAAATTCTCCTAGATATAAAAAATATACTGAAGATTG
CCAAGGGTTAAACAACATGCTTAAGAAAGACAAAAAAAGTTTCATATACC
CGCATCACATGTTTGCGTTTTTTTTCCAACAGAGGAAAATGGAAAATTGA
TTGCAATAATTTAGGTAGCTTTCATCATCAAAAAGATTATTTTTATCGAA
AAGATTTAAATTACCGGGAACAACAATGTGATTAAAAGTAGTCTCAGGTT
CCAAAATCAACCCCCCCCCCCCCTTTTTAATTTTTAAAAAATTTTTAATT
TTTTAAAAAAAAAGGGGCCTTTTTTTTTTTTCAAAAAAAAAATTTTTTTT
ATTAAAAAAATTTAAATTATCGGGAACACAAATTGAAATAAAAAAAATTC
CAGGTTCCAAAAAAAACCCCCCCCCCCCGCTTGTTAATTTTTCGAATACT
TTCTAACCCTCCAATCCTTATTAGGAAATCCCCCCCCCCGTTTATTAATT
TTAAAGAATTTTTTCAGCTTTCAAAAAGAAAGGGTCCTTTATTCTACTCT
AAATATCCCGATGTTAGCCTATATTTACCTTATTTTGGGGTTTTCGTAAT
TACAATTTCCCCGTTTATTAAAGTTTTGAAAAATTTCCAGCCCACCCCCT
CCGTTTATTTGGAACCTAAGAGTAGTTAAATGCCATCAATATTTTCTTCT
CTTGTAGATTATATTGTCGTAACATTTTGGAAGAGAAGAACCCATGGCCC
ATTACTGAAGATCAGAAAATGGATGATGGATTTCGAATATTCATGCAAAA
GAATTATAAAATCTATGAAAATGGCTGTCTGACTATTATGAGGATGCTTG
CAAATACTTTAGGTTTACCAACAAACAAATTCTAATAGCGAGTTTATGTA
ATTGCAGCTTTGAGGACGGTAAGGTGACTAGCGCAATTCGGAATAATCCA
TAGCTCAAAAGGCCGGTCTCCACTTCCGCGCTAAGATCGCCCTTTTGGCT
TCAATCCTTTTTGCTTGGAAAATAGATTACGTCATAAAAATGTAGCGCAC
GTTCGAAAAAAAGACCGGCCTTAAATGCATGCTGGTTTACCATTGTCCTC
AGTTAGTCAAGATCTAGTCAATTTAGAACCTTACCGCATCTCCGTCACAG
ACATAAACTCGGTATTACTTCAAATAAGGCCTATAAGAAACTCCTAAACT
TATAATAATTTATTGCTTTGTTTACCAGTTAACAACATCCGTTAGCGATG
CTATACACCTTTAAAAATATAATTCATTGCACTACGATAATACACATTTT
CGACCCGTCGCACGGTCAGGTGCGTGCCACTTAATTATATGATTATCTCC
CTAAACTCGATCCAATCCTGCTTTTACACATTTTTCTATTGTCCATAGGT
GTGAAAAAAGGACTGGGACGGTTTTAGTGGGATAAAGCAGACAAAAAAAT
GCCCGCCTGGCAATTAGTGGCTACGGTCAAAAAGGTGTATAAATTGGAAA
ATGAAATAAAAATTGAAGAAGGAAATAACGGACTTATATGCTTTAATGCT
AGCCGTGTTATACTTGATGGGCTTGTTTGTTTTTGTAGGATTTCTATAGC
ACGTAATCTCAGGGATTTGGGAAAATAAGTAGATTCATCGACTGTAAGAG
CCGACCAACTGACATACAACGTTGTTTCAACGTCTAAAACGTCCATATAA
CACTAGATGAACGTTATGAACGTTGAAACAACGTTCTGTGCCAGCTGGGT
AGGTAAAAAATGATTTTTCTTATCGGATTTTTCTTCATCTTCTGCTATTT
TAGGGTTCGAAAGAAACTTTTTCGATGGTTTATTGTTTGGACCAAAACAT
CTTTCTACGCATCGTTTGATTCACTATCCATCTCGACTTGGTGATCCAGC
CTCGATTCCAAAAGAAGCTTGGGATGGAGATCAAGCTATTGTCACCGGTG
AGTGGTCAAATAAGTAAATGGATTTTTTTTTCAGTTTAAAGCTGCATGAT
CCAAAGCTTACACATCTTTTTTGTAAGAACTTCCGAAATTTTTGAAACTT
TTGGATGTCCTGAACTTTTTGAGTTTTAAGCTTGAAATATTGTTTATTTT
CACGATTCTGTGTTTTTGTGCAATTTCCTAAATAAGGTGTTTTATGGTTT
ATGAAGTCATAAAATGTTCTTAATTTGCCCTAGATATTTTGGTTATTGAA
GCCTTGTGCTCTTATAAAGTTTGATCTTTGTAAAAAAACATGTATTCAAA
AATACTTAAAGGGCATGAGATTAAAGGTTTTATTTTTACATAAGTGCTTC
CGTTTCATATCAGACACATACTTCATATCAGGACAGTGTCTTGCTATTGT
TATATTATGCTTACATAAGCAAAAAAATGTTTTTCTTTTCCTCTTTCTGA
CTAATCTTGCATCACATATGTGTCAATTCAATGTGAATAAGCAAACATTC
TCACTCTTATTTAAAAACAAAACCTTTAAGAGACATTAATTACTCATGTT
TAAGCTTGTTTGGGTTGAACAGGTGGGTTATTGAGAGTCAACTGAGTGCA
AATTGAGAATTTGGGAATCTTAGATGTTGAAATTTAAACTTTTTTCTATT
CCATCAAAATTTTAGGTGAACATTTTGATACTGGAATCTTAACCATCCTT
GCAACCTTCGAAAATGCTGGTTTACAAATCAAACCTAATGGTTACTCAAA
ATGGATAGACGTTCCTGCAAGAAAAGATCATTTGGTGATTAACATTGGTA
ACCTCTTAGCAGATATGGTTGAAAATCGTCTAGTGGCAACGAATCATCGA
GTCGTAGATATTGGAATCTCTCGGTACTCAGTCCCATTCTTTTTAGAACC
ACGTTACGATGGAGATCTATCGAAAACTATTTTCGGTAATAAGTTAAAAA
GTGTCGGAGAGTTTACAACATTTGGTCGGTATATGACAAATCGAACGAGA
ATGTTTGCAGAATATGCGTCTATTGATTGGGGATATATTGACTAATATTG
TTTTACCTAGCAGCGAGCTTATGTATTAGAGAGAAATCAAAGGAGACGGT
ATAAAACAGAGTTAATGTGTCGCAAGAATCGCCATCCACTTTGCTGGACG
ATAGTAAAAACATCAAAAAATGAGCAAAGGTGATATAGAGCCGTCCCGTC
CTTACCATCCCCCTCGTTATCCTCCTATAGATAAACTCGCAATTAATTGT
ATATACATTAATAATTGATTATTTCCTTTAGCCCTATTCAACTTAGGCTT
TTAGGGGCGGTTCAGAACTAGGGGGGCTTTTCCTGTACCACCCCTTAACT
TTTGATCTAGTGGGTCTTTTTGGATAAAATTTGGAACACAAGATCCTTTT
CACGTAAGGTAATTTTTGACCAAAATTTTTTTTGATGACGTCACTCAGCC
CAAAGTGAGCAAAAACCGAAAATTTCCTTTGTTCTTATAAATAGCTATTG
TATTCTAACAAAGGCTTTAGAAAAAAGTTGCCTGAGTTGAAAATGCTTAT
TTTATCCTAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070496TCONS_00070496Clytia hemisphaericatranscript
TCONS_00070495TCONS_00070495Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070495-proteinTCONS_00070495-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:7970..17781 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.44	0.33	0.73	0.81	0.61	0.39	7.22	6.74	6.53	4.46	4.17	4.77	7.12	7.48	5.62	8.56	13.22	14.47	5.28	6.01	7.65	7.39	4.81	6.94	7.03	5.37	4.21	2.66	9.21	6.5