XLOC_043936 (gene) - C. hemisphaerica

Overview
NameXLOC_043936
Unique NameXLOC_043936
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_57:6713..10289+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043936 ID=XLOC_043936|Name=XLOC_043936|organism=Clytia hemisphaerica|type=gene|length=3577bp|location=Sequence derived from alignment at scaffold_57:6713..10289+ (Clytia hemisphaerica)
cagaaaaacaaacaaaaataatttaaactaAAAGAAATACAAATTGATTG
GATTGGAGGTTATTGTATAAAAGGATTTGTGTCACAAAGCGTACAGAAGA
ATAAAGTTTTCGTGGATTGGGAAGCAGTTGTATAAAAGTATGAAGAGTGT
AAGAATATGATAAACAATTGTCCGAACCTTTCTTTCGATGTTTTCTGACT
CACGTTTGCATTTGAAATtggcctttttttattttttcctctcCTTCTGA
TTCTATTCAAGATGAGTGATGAGAATGAAGATATAATTGTTATCAACCCA
GATTCAACAGCGGGTAGCACTGAGTTTCATTTTGACCCACCTTCGTTTTT
GATTGGTAATGCTGACTGCAGTGAAAAAACGACAAACAATattattaaaa
atgaaaaatataaaggTTTTTTGATTTTACAATCCAATGAAGGAACGACC
AATCAACAAAATAATGATATTGAACACGAAGAAACTTTTACATGTGATGT
TTGTGATAAATCATTCCCTTCAAGATCGAAACTTAAACGCCATGGATATA
CCCATACTCGCGTCAAAAGATTTGTTTGTAGCATTTGTCACAAAACATTT
AATCAGTCTTATCATTTGAATGTTCACATGAACAGCCATACTGGAATTAA
GCCCTACGAATGCAAGGAATGTGGTAAATTCTTTAGACAAAAGATTAACC
TCAAAAGGCATACCGCAACTCATGAAGGAATCAAGCCTTTCAAATGTGAT
ATTTGTGATAAAACATATGCCTTGAAAGTTGATCTCAACAGACACCTTAA
GACCCATACAGACGTAAAATCTTATGGGTGTGGTGTTTGTGGGAAAACCT
TCGCACGAAAATGTAATCTTACCCAACATCTTGGAACACATGAAAAAGAG
AAGAAGTTTGAATGCaaggaatgtggtaaatgctTTGCACAAAAGGCTCA
CCTCGAAAGGCATATCAACAATCACAAAGGAATCAAGCCTTTTAAATGTG
ATATTTGTGATAAAATGTTTGCCGTGAAAGCTGATATCAGCATACATCTT
AAAACCCATGCAGATGTTAAACCTCATGGGTGCGGTGTTTGTGGGAAAAC
GTTTTCTCAAAAGTCTAATCTTACGCATCATCTTACAACGCATGAAAACG
AGAAGAAGTTTGAATGTAAGGAATGTGGTAAACGATACAGATGGAAAAGA
GACTTCGAAAAGCACATGTTCACCCACCAAACTAGTGTTGAGAGTGCTCC
TGATGAAACTATTGGTACTCTTGTTTCTATGGTTGGTTTATGACAAACCT
TTTTTACAAATGTTTCAATCTTGATACTGGTAGGGTCAGCCTGTCTTCGT
CAATTTTAAACGACAGTTGCCTAACCAAAGGGGTCTCTTCTCTTTCTCCC
AGGATTTCTCATCTTagcattgataaaaaaacataaaacctTTCACACCT
TAGCCTAATGATCATTCTTTTATGTTACAATTGCTTTGTTATAATCatgc
ttattttttgtcatGCCTTTTTTtataggttttatttttatccaTTGCAT
AAACTTTTACTTCCTATCTATCTCAGGTATTCTTTCTAGAGATTTTATAG
TGTTCTGTGCTAATTTTTTACATTAGTAAATTGGAATTGTCCATTTTTTA
TTCTATATTTCTTACATTATTTTGCATATTGTTTTCACAATTTCTCTTCT
CTTCGTTTTAGGTCATTTTGCCCTAAAGTGAAAAGCTGTGGGGGTCTTTT
TAATTAAGTCGATCGATACCTCTGAATTAAGTTATCATTTTTATCCGTTT
TCATATACAATTACCAATAAAAAACGAGTTTTTCTAACcacttttcattt
atttttgttttcacagACCATCATACTAGACATAAATAAAAAGTGTTCAT
ATTCGAAACTGGATTGTCataattttgatttatgatttaatCATTGTTGG
ATTGTGTTGTGTCAATGTCATGTATTTGAAAAATCGACCATTTTACGAAG
GAATTCAATTGGATGCTGAACAGCAAAGTGTGTGGTAAACCGTTTCCATT
GTTATAATTTTATTATTGTACTTTACAGTGACCGATGACTAGTGACTTAT
CTACTTGACTGACTTAGCTGACTTACCAGACAGTAAATAATATGTGAAAT
TGCTTTTCACACCTTGGAACATGCAAGAAATTCCCCTCATTTTTGTTCCA
AGGTATAAAATGCACTTTTCACACCCAAGTGATTTACTCACTTTTTACTA
TGATAcacaaaatatgttttgtttgttttcaatattatttaattgttttc
ttttatcctacttttcaaaaattagtttttgaatGGATGTGAATGATGGC
ACCaacattgaaatcaaaattaaagaagaaCCAATTGATGATGAAGACGA
ACTGTATTTTGACCCAACTCCATTTTTGAATagtgaaatcaaagatgaaa
acCTAAAAGATAGTGATGCTGTAGTTAAGATAGAGTTTGAAGAAGAGAAA
GAAGTTCAAAAGTCAAATATAATTTCTTCAGAATCAACAAATCAACAAGC
TGTACAGAATAACACTAATAGAAAAGGAAAATCTTATAAATGCGATGTAT
GTGGGCAATGCTTTTTACGTAAAATCCATTTCCAGCAGCATGTGGTTACT
CATACCGGATACAAACCCTTTAAGTGTGACACTTGTGGAAAGGGCTTCAA
CAGACCTCGAAATCTTCTCAGACATCATGGTATTCACACAGGCTATAAAC
CGTATAAATGTGAACTTTGTCACATGGCGTTCAGCCAATCAGCGCATCTG
AAGTCACACCTCATTTCTCATTCACCGATTAAACCATTTGAATGCCAAGA
GTGTGGTAAACGCTTTGCACAAAAATTTGATCTCAAAAGACACGATAGGA
ATAATCACAAAGGAATTAAACCATTTGAATGTAAGGAATGTGGTAAGTGC
TTTGCCTTCAAAGTTGATCTTAATAAACACATGACCATACATGCAGAAAT
CAAGCCTCATGTTTGTGATGTATGTGGGAAACGTTTTCCAAGGAAATGTC
ACCTCAATCAACACCTCAGAACAGGCCATGCCAAAAAGGATAAATTTAAT
TGCGGACTTTGTGACATGAACTTCAGATATAAAACTAGCTATGAAAAACA
TGTTAAAACTCATGTACCTCAGAATAATTCTGCTAAACATGAAGCAGGTG
ATTTTGGTTCACGTGTGACTATGGTTGACTTTTCTTAATACTGTTAAAAT
CGATATCAAAATCTTAATATTGACTAACTATATCTGTTttagtttttgta
tttttatataattttttacgAGTAATTTTCTAAAACGATATTTATGAATg
cgtttttaaattttataacaAAACTGTTTTTTATATGCACAAGTACAATC
TCTGTattaaatttctatttttcggttaaagtttgtatttttgatattat
tttcctttgaaatgtATTAAAGgggtgtttatttttgtaatgaCAATAAT
ATGATATTCTTTCATTAATAGtataatttctttgtttttaatttctgtTT
GATTGCTACAAGTTTACTTCTAAAACG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070595TCONS_00070595Clytia hemisphaericatranscript
TCONS_00070596TCONS_00070596Clytia hemisphaericatranscript
TCONS_00070597TCONS_00070597Clytia hemisphaericatranscript
TCONS_00070598TCONS_00070598Clytia hemisphaericatranscript
TCONS_00070599TCONS_00070599Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070596-proteinTCONS_00070596-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:6713..10289 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.64	23.29	10.82	8.68	28.32	21.41	19.87	23.01	19.52	18.14	16.71	17.69	14.33	16.61	13.73	14.48	15.74	14.21	11.52	14.81	13.67	13.78	35.17	32.63	9.26	11.1	17.28	13.94	22.98	26.03