XLOC_043955 (gene) - C. hemisphaerica

Overview
NameXLOC_043955
Unique NameXLOC_043955
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_57:654352..660096+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043955 ID=XLOC_043955|Name=XLOC_043955|organism=Clytia hemisphaerica|type=gene|length=5745bp|location=Sequence derived from alignment at scaffold_57:654352..660096+ (Clytia hemisphaerica)
GAAAAACTTCATCTTATTGTGTCTTTCATTGAAACCAACTATATAAAAGG
CTCGtggttttatttttcaaatatacaaTCAACCCAAAAGAACATAACAA
GacttgaaaaaataccaaggcTGGACCCTGGTAGAATTCAACTTTAACCT
TTAAACTTCAATATCTGGAGAGGAGTCATTCAACACAATTTTCAGCAGCT
CAAAACACTGAAGAAAGTAGAAGATATAAAGTAAATCACAGTTCTATTGA
AAGATTTGGCAAAAATGCAGCTTTTACCAATTTTAACATTCACAATCATA
TGTACATTCAACCAATTATCAACAGCTTTCAAACACAACGTTGGCAATCC
TGACTTCTTACCCTTTTTTCCGTTTTTCCCGTACGGGAAAGGGTTCGATT
ACGTGCTTACAGATCCACCAAATTATGTGTTCGCCGAGGGAGATGAAGAT
TATGGAATATTTGATCATTACCTGAGTAAAGAGCTcccgatttttcaaaa
tccaaacaCGCGGTGGATATTTGTAAGTTGATTCTTAGTTTtagtatttt
gattttgaaattcacctttcgataatattgaaagccacTGCCAACGAGAA
ACTTTCATAAACGACGCTTTACCATTCGATAcgttcccttattcgatgaa
aatctaatttAGAGACAACAACTGTAAATTAAGTTGGCTCTCTGAATTAA
TTGACCTTCAAtcgacaaaaaatattttcttcaaaatagaGAATTTTAGA
GAGCATTTTATTTGTCTTGAGAGGGCAAatatttagttcgaattatagaa
agactCGAATCcaagaggttcgaattagagagagttgactgtatgaAAAA
ATAGGACATTGGACTGCAATGCTTAATAACATAAACAGACACCCTTATCT
CGTCAAGTGACCTAGCAAGAGGTTTTTTAGGCCGTACTCGTcctctctga
tatgttttgatataggagCTGTGTATcgtataaaaaaaacaaaaatacgg
gtgtaactctcggacgggaattttttacACGATACGCATTCCTTTTATCA
AAATCAAACCTGGATAACACACAGCCTAGAGTTTTTAGCATATAAGGAAA
ATCTTAGGGAGCTGAAATATATCCAGATATGGTTAATGAAGATCATGCTA
CAGTTAGTGCCTTTATCCTAGACCCAGCTGacacgttttttcaacgttta
tctaatattcacaacgtccaaataatattagattaacgttgaaagaacgt
tgtgtgccaagtGGGGAGGGTAGATGACTGAAAACCAAATAACTATTTAC
ATTGGGAAGGGTAAAACCTAGTAACGCTTAAGTGGTTCTTAGTCCACTAT
TTTCACTTCATCAAAATCCTTCACATAAAAAACGTTTGTTGCTTCCTGTT
TAAAATTTACGCGTTAGTTGTCAAATTATATCCAAATGGTTTGTCGTACA
GCTGTCATTAAAATCCGGAAAAAGGGAAAACAATCTCATGCAACCGCAAT
TTTGTTAATGAGTTTTCTAACAATATTGGGAGATGAATAATAACAACGTT
AAGTTCCTGGTTTTGTTTTTCTACGTTTGTCGACAATTTGTCGTAATTTG
ACCTTCTCGTCGACGTCGACGTCGACACCCGGAAAACCGTTAAACTGACC
CTTTTATGTACCGAAATATCCTCATAATGATTTATAACTTTATATGGTAT
ACGTTTCtcgatttttctttttaaacttttactaTGGAACAGGAACTTTT
TCCAATTAAGATCTTGAACTTTGTCTGATTTCACTGTCACACAGATTCtt
gttttgggattttttaccataaaaaattcTAACTTCACTAGCTTTAGCAA
CGACCTATAATTAAACTCGTATTCATTTTTCCATAAATAATCCAACTGAT
GATTGCATAATTGATGCATGATTAAAACAAGCGGTTTtggtcaaagaaaa
attactgtTTCTTAAAATgaattaattatttaattattccACAGGTTGGA
GTCAACGGTTATGTCTCATTCACTGAGCCTTGGTACAGCAACGGTGCAGA
TAAATTCCCTCAGGCTGGTCCTGGAATTAGTCTTTTCCAAACAGACCTTG
TTTTCACGGATGCAAANTTCATTCACCGAGCCTTGGTACAGCAACGGTGC
AGATAAATTCCCTCAGGCTGGTCCTGGAATTAGTCTTTTCCAAACAGACC
TTGTTTTCACGGATGCAAAAGATTCACATCTCTCTTTTAAAGAGTACGAT
GAAGAAGATAAAGACATTATGGAGCATGCGCGAAATGAATTGGAGGTGTA
CGCCAATCTAAAAGATTTCGATCCTAACCACGTGATTGTTGTCACGTGGC
ATAAAGCATCAAAGAAAGACAACAAAGGAAATGTACGTCCATTTTAACCA
GATTTTCTCTAACTAAAAAGCAAACCTTTGATCTCCCTTGTGGATTTCCC
AATACTATGTACACGAGTGTATCCCATGCATAACATAGTGTAATactatg
aattttgaaatttctgattGGTCCACAATCAAGAATAAAAGACAAATCAT
TTTTTGATTGATGCACAGACAGCCCCATTcttaatttccaaaagaaaaaa
actgtctaACTATAAACCCTTATATCTGAAATTTTGAAGTTAGCCTTTAG
GCCCTCAGCTTTACCCTGTTACCTTGCCTCTACTGTTTTGACGTAGTTCG
TGTTTGAATGCAACTGTTAAAGAGATCGTGAGAAAAGAAACCGTTTCCAG
TGTGTCCATACTATCGTAAAAGATATTGGACAAATTGAGTACTTGGAATT
CTAACCGATTTCtctttcctttgttcttttagGTAACTTTCCAACTAGTA
CTTGCTTCAGATGGTTTCAACACCTATGCCATCTTGAATTACGAAGATAT
TACGATTAGTCTCCAGCGAAAAGATTTCTGCCCTGTAACAGTAAGTCAAT
TTTTTGAATGCACCCTAGGTATGGTTACCCGCCATTTTTTATCACAGTCT
TTAGAAATTTGGTACCCTATGTGAGGACTATTCGACGTAATTCAATTTTT
AACACGATATTGTTCGCTCTAAAATAtggttcccttttttgtccaaattc
tgctgtattagcctccttttcaaaaatcttccacccaggacatttttatt
ccaatccACCCGCTTatcaagttttgagattttttccaacccccccccct
cccccccccccccccgcttatcaagttttgagatttttcccaaccccccc
ccctcccccccccccccccgcttatcaagttttgagatttttcccaaccc
ccccccctcccccccccccccccgcttatcaagttttgagattttttccc
ccccccccccccgcttattccaatccccccggctattatGTACCCGAGAG
TGTTCCATGAGGATATCATATTCAAACATTTCGTTCAGGCAGCATCGAAG
AACTGTCTTCAGGGTTTTATATATAGCTCTTCAGTGGATCATAATAgtga
ataatttcaatttcttcttttaataaCAGATTGGTTGGCAAGAAGACCTC
CAACGTTATGTtgaacatgaaaacatgcaactCACCCAAGCCTTCCCTTA
TAGACCAATCAGAATGTCTAAGAAATCAAACATCGGTTTCCCTGGAAAAT
GGATTTATAAACTCTTTGGAACCAGTAAGTCACTATGATAGGTTTTCAGC
AAATTCAAATGTTTTCCATTCTTGTATAGggtttttcttataagctttTT
GTCAGTTCCTTGTTTCTGTATAGACCGATTCGTGTGACAACATTTTCACC
CACGATcagccatttttctaagaaatgttTCTACCAATATGCACAAGATG
ATTTCCCTAACTGGATTTAGCCCAATCGGTCTATACAGTTGGCTGTGACT
CTCACTAATTCGAGCCTGATAATCTGACTGACGGAGAGACtcggaaaata
gaaaaaaaccctgtgtcacagacccgctgggaacccagccccactggaaa
attgactttcatttcatccccattcgaaattcaatgtttataaATTGCAC
TCCagaaccatccccactggattttataccttggaacaatagaataaTTA
TCCCCTGTAtaatttcgatagaaattttaatccccactgaggaaaaagtt
ccatcGGGATGTGAGAAAGCAGGAAAGAGAAGACGCTTGAGTATGAGATT
AGAGATGAATTAGCAAAAAACTCTAAATAAAAGATTGCTAGAtagattct
ttttttaaaggatgtactatcagaaaaatgtttAAACAAGCAATTTTATC
ATTTCTTCTTCATAGAAATTGCAGAAGAAAACAAACCATCGCCAGTGCCA
ACTCGACCAGCAAACATCAAACATCTTCCCGCTGAATGCCCTGGAAACGA
TTTCTGCCAAAATACCAAAAACGTTTTAAATGTATGGCCCGGTTATTCCA
CCTTCTATGTAGTATGTCCACCCGGTGGCGCACCCGTATGTATGCCATGT
GCGGAAGGGACCGCCTTTAGTCCGGAATGCAGGACGTGCGTTCATACAAG
TCAACTTGGACAGCCAAAGGATAAACGTAAgtcaaatctttgtcaaattc
aaaaaatcttaaagatTTAAACAAGTTATCTTTCCCgaaaaatattactt
ttcattCCTAGATACTTATCAAAATAGGCTCAATTATATTATATCCCTTG
TGCCATCATATCTCATTAGCCTAAAGCCCAAAGCCCAAAACTTTCTCCCT
TGAAAACCATAAACTAAACTCACAATATTAATTATTCACATTTTTCTTAA
TCTTTTCTACAGTTTGTCCACAACCATCGAAGAAGATGGAAGATCGAGTG
AAACAAACTGCAAGATGCAACCATGCTGATGGTAAGACAATATTTTCCAT
TGAAACTCTCTCATGTCCTTCAAATAGTTTTTCTTCAGTCACGAATACTT
GAGGCAGAGGAATGTCTGtaatttcaaaggaaaatctcttcattttcaaa
gaaaagtgTCTGGTTTTTAATAGAATCAGCCAAAGTTGTATTCCAAAGCT
TTTTGTTGTTAGATGAAATTTTTACGGCTTGAAAATTCTTCTATTTATGC
TTTAAAGACgctttaaaacactttaaaaattacctcaaaagtttactttt
ttcaataatttttgaaatgtaaGGCTCGGATTTTTCTTAATTTAAtaagt
ttttgccaaattttagtctcattttcttatgaaaatgtaaccaaaaaggt
ttttcaaagactTATTTTCAACTAACTTTTTTGTCACTTTAGCATTACGT
CACTGTACCATGCGTGAGAACCAATTACATGACGGTCAAAAGAAAACACA
ACACACCACAAGCTACCGAAACCATAACGACGTCAATGGAGCGTCATATT
ATCTTTGTGCCGGTGCTGTTGGTAGTTTTTGTATGCCTTGCCCTGCAGGG
ACCGTTTTTCAACAGTATGAGCATGATAAGAATAACGGCGCATGCGTACA
TAAAAGCCCAAAGACGCATGCTGAATGGATTTAGATTGACCATGGAAGAT
TGGAACTTTGTATGGTAAAAACACGAAAAACGAAAACAGTTAATCAATGA
CACTGCCTCACTACATCTTATTTGATTTTGTtaaccaatgacgtcacggT
TTGATGATAGCATAGGATGTCATATACATATATTGACATTAAACCATTAC
AATTAGCAGCACGTTTCAGAGAACCTTTTTGTAAGGGAAAATGTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070647TCONS_00070647Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070647-proteinTCONS_00070647-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:654352..660096 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13	0.87	0.52	0.36	2.4	2.08	1.65	1.46	1.32	3.17	2.44	1.59	72.04	40.8	104.43	59.12	6.32	20.03	2.05	3.16	0.86	0.46	0.72	0.63	1.38	1.31	1.4	2.38	3.93	3.39