XLOC_044302 (gene) - C. hemisphaerica

Overview
NameXLOC_044302
Unique NameXLOC_044302
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_60:1077571..1088583+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044302 ID=XLOC_044302|Name=XLOC_044302|organism=Clytia hemisphaerica|type=gene|length=11013bp|location=Sequence derived from alignment at scaffold_60:1077571..1088583+ (Clytia hemisphaerica)
agagcacttacaaatcgattgtggtttcaaaacttcccggtggatttccc
ttttttctcaaatattacgaccatgattgtagagtCCGATCTAGGGTCCG
AAATAGGGTCTGGGGTCAGGGTCCAAGGTCCGGGTCCGAGTCCGGGTCCG
ACTTTTACAGTATGAaagtcactttcactttcagtcactCCGCAGCCAGG
GGATCTCAGGAAATCGTCTCCTGCTCTTTAAACAATTTTAACCTAGTGTT
TTTATctgtttgaaaatcaaaatatggCTGGCAGCAGCAAAGAAGAtaaa
tttgaaagtttcatgAAAGATGTGAGTTgttttttcctcttttaaaCTTC
ATAGGTATATATTCTTTTATAccatttcattctttttttatttctttggg
GATGCAAAAGtgttttatatatgaaagtactTGTAGAGAGACATCTACCC
ACAGTCAAACTTACCAAACGTCAAGTtagatcaaaaacaaaaccatggAT
AACGCCAGGAATTTTGAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNatcgttgtttcgtcagccatctttaaatTCGCTACGGCT
TGCTCACGcagtttacatttaaaaaataatggagataatttccaaacttt
tttcagaaagttgccggaattaattatctccataatcaaaatcaacagaa
aagccgcatttcacaaaaaatagaCCGACCGTCggcgaaattcaagggcc
gtgcAGACCGTCTGAACAAAGAAACTCGAGACGTAAacatcgggccgttt
gtttcggttaaaatttttgtaaaatagcAAGCGAACGAATATTTAGGTAT
GTAAAAATAGGAAAAGAAAtgtggaaagtaacatttgtcacggaataaac
gtattaaaaatcgatatttctggggaaatttcttagcgtcaaagactcta
acccacccaccccttcgcgtcaatttgacgttagtcgtgggaagaatcga
tatgtgagtgaccccttattCAAACTTATTCAATAGGCTGTCGCGTTCTC
CAAACAACTTATTGAAGTTCTTACCATTTAAACGTGTATAGATAAGCCTC
TCATTTGATTCCAGTAATGTATTTGGTCCAAGTCCAAGCTTTTCCATGAT
GCCTGGTCTGAAAGGCTCGATAATAACATCAGATGAAGATGccaatcttt
taaaaacattctgtccttttgaagattttaagtCCAAACAAATTGATTGT
TTTCCACGAGAAAGAGAGTCCAAAGTAAAATTCTCATTGGTTCGATTAAC
TCGGCATACTTTAGCTCCAAAATCTGCAAGGATCATTCCTGTAAATGGTA
CAGGGGCAAGCCCGGCAAGCTCCAAAACCTTGATGCCATTCAGGGGCAAT
TTCCTCGTGACCCCTGCTGCagccgccattttgtttgttatgGTTCAGTG
TAAAAGAATCACGAAGTCACGAAAATTAGAAGGCTTGCTTCACACGAAGA
TCTATCTTAAAGCCTGTTTTACATTAGACGTGTCATTATCTTAgttgtca
ttttgaaatttttcataaaagtcAAAAGTTTGACAAAAGTCATGAAAGTG
TGTGTCACAGTGTCTGTAGTGTGCAAGGAAAGTGGGAATCCAGGAACTTG
TACACACTTGTACCTAGTGtctatcatcatcatcatcatcatcattcaat
catcaatcagaCAGCATGGAAATCAGGTCAAAATTCAATCCAGATATATT
ATTAAGTATTATAATGCGTAAGAAGAGTTTGAGGAGGGAAAAAGGTgata
caaacaaacaaacttgaCTTGATGAAGATTTCCATTCCAGATTCCAGGGg
gtttaagcttggatttttCAAGAGGTAAATtgtatttgtcctatttttca
tattttcaaaggcAGGAGCTCTAAAAaactctaaaacagcatctaataac
atgaaaaccagaatatgattcttcaatagaccttttttcaaagaggacgt
cctgttgaataattatgtagtccagagCCATAATAACAATGGTAGAGCcg
tgcataattactgtatcatgcatattgtaataattatgcatggttttatc
attgtttttctgctggactacataattattcaaacgacccacggcatggc
ccaaACATGTTCAGGCCTCTttattaatactttttaaaaatggcccgcgc
gtggcccgcgcagtttcggaccatgttcgggtcagattttcgaaaacttg
ctatgatcgcgcgtgtaatttcagggactcaatatttatattttaaattc
cttattttagcaaacaaatttaaaaatcttcatctttattcattcaaata
tatattgttcaaatataagttaggaaaaataaaaagaatgatttgaatct
tacataatatggtcttctttttattctttatcccgttcccttttctcgtg
gtcttctcctattcgaagcagaatttttctgtatcgttttttgtactgtt
atacaactttgtgaatcaaactggtatttggaactttgaatttgtctaag
gCAGgcagcaatcacaaatatcttcgtttcgcgtcgcccgatcgactctc
gaaaattgagtagaattgagtcggtgagtcggtaaatttgtcggactttt
tctgtcgaTGACGTTTCTTTCGTTCAAAAATgttattattgccgattttt
ttgcgagcgatttctagcgcattcgcagcattttgactttgtccATCatt
acagtgttcaaaggtcataatttgaaaccacccgTAACGCGCGGTCATTT
Tgactggctggctggcagtttccttcaagaatacactccaaaaatggatg
attaAGGTCTGACGAGAAGAAGAAATTCACTGGgtccaattttaagaaaa
cccgaccgaccgactcactttttcgacccaacgaggacgcgaaatgaaga
tatttgtgattgtcgcctagtgaaaatatttaacaatggatgatgataaa
ccaggaaaggtaaataaaatggcccgaacatggtccgaacaaaatgttcg
ggccgattacaataatacttttttgtggcccgagcatggtccgaacatgC
CATGTGTCGTTAGCTACCATCTTGCTTCCGGCATTTTCAGGGAAGTTAAA
AAATGAGCTTTATAAAGTCTCTGACAGTCAACACtagctatttttttatt
tcttatttcttatttctttttttcttttctctaaaGATTCAGTCAGTTAT
CCctgtaaaacaataaaaattcccAGAAAAACTCAGTGAAATCTCAGTCT
GGAAAGTTGAAGCTTTGTGCGCTAAGCTGAATGGTTTGgttacaaaatgc
ataaaacataatgcatattgcataatgcataatagtattgtttaatttac
attacgattttatattttctaaaactctcctttgtagaggctaaaaccgc
gaaaacctctttaaAAGAGCAGAcatgatttttacttttcaaatctgaac
gaaagagaaaacattctaatcataacaacaaagcatTCTCTGTCAGCata
tataaataataaaaagatgcaacagatcagaaaggtttttcccttcttct
ttctcaaaaaaaaggtaaacacataaacattcgaatgtaaaaaaatttga
attctatttttttaaatctagctttcgcatgaagctctttaatttatatt
ggctggatattggcttatctaacaaaaagcattcacatggtttaagaggg
aaaacccgttgaaatttattagcaattgttcgaaaagatctctggaGAAT
CCAGAATCAGAATAAagatattgctataaaatttacgttttcaagttaga
aaagtaatatacggaggagatattttcgtgttttttctacactatactac
gttttctaaaatacaactatgaaaatcaaaacggcgacaagcattttcag
tggatcaaggattttcttcatcatccaaaattctaatttacagctttcta
ccctttattttctggcagaaagtggtatatttgttttgttgaaagtatta
tctttcaaattctccttattatagcctctaaaattgacatttttcagata
ttatgcattatgcatatTATGTTTTGGACCCGCTGGTTTGGTTACATACC
TAGAGCTTCATCTTTTTTGGGATGCCTTTTTTACTGGCTAATTCAGGAAA
GGTAGGGTTGACAGGGTGTGCTATGGCtgacacagacagacagaagaTGT
TAGGTAGGTAGgcagggggggcacgcagttactacaagacatgatgtgta
gtaagtgctttttcaacattttttttcaggaccaccaccctttgcagtta
ctacatcttggtagtaactgttttcagaaaagatttccaggtaccacccc
tgtttttgagtgatatcatcaaaaaaatgctcgaaattaccctaaattgc
gattatttNtttttgagtgatatcatcaaaaaaatgCTCGAAgttaccct
aaattgcgattatttttcaacctaaagccatttttgtgctaaattttctt
ttaatatacttgattaacagctgttgagaacattttaatgataattaggg
aaagcataatttcaaagttgggtctgagaaaaatttcaaattttttttcg
tccatttataacaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtaacaaagaattttttcacaaaaaaattcattt
tttgtgaaaaattttgaaagttctttaaaaagaattaaaatataagcact
tactacaccaaaagtgcgtGTAGtgactgttttcataacttctgaataca
gtaccaccacggtagtaagtgtcatactgtcttgtagtaactgcgtgccc
cccccctggTAGGCAGGTGGAGCTCTAGCTGGAGCTGGCTGGAGCGGAGG
GCTGCACTTTATTCTAAAGATAAACAGTCAGGGAAATTCCTCAATTgtgg
tatactgcaattgcagtagttttcattcgtggttagcctacaaaggctta
taacgactacatatagtgctggtcgacaaagataaacaaacattgACTGT
AAAAAATTGTATGAGTGAGAAGAAAgcttgtaaaaaatattttgtgcgtt
aaaaagatatgatcaactatgtacaaaaattgcctgtcttctccttgaat
cttgaattctgttttatgaatatactgcaattgcggtatataaaaaatat
aaaagtgaTGTTTATACGTGgcaattgcagtaaaaaattactaccgcaat
taagggatttccctgactgataAACCAGAtgtaattaatcgaacagttca
ATTGCCGAACTAATTGAGCTTTGTCAAACTTACTCAAACAACAAAAGTAA
ATTCTTGAATTAAACTTTTTAGAATTTGCTTTaaattgtgagtgttcaat
TAATTTTGACTAAAGATTAAAGGCCATGAGACTCTTATCTTTTTTCAAGG
ATCAATCAAACCTCAGATCGcctaatttttttgcttccgctGACAGAGGC
TGAAAAAGGGTTGctcaatttctttattcaaaattttattcgaactttgt
atttttgaaaaattagtgagtattcgattaaaagTCGACAACCAAAATTA
GTCGAGAATTGATTAAGCTTTGACAACCAAACTTAGTTGAACATTAATTA
TTGGacaacaaagttcgattaggtttgacaaagttcaattaaaaatacag
ttcaattggttcgattaattacgtctagGATAAAGCtataaaaaacatat
ttataTCAGCAGATCTCAAACACTCTGAAAAAGTGGTAAAAGTGACAACT
CTCACCCATTCACGCATTTCCACATTTCTACATTGCCTCACACAATTTTG
ATTTCTCACTTATATTTTGGATTatgagaaaaaattttcgattttcagaa
aaaagtttcCCCGATCTTccgttttttgtaaaaaatttcctgattaatga
tttcaaaaaatcaaagaaatcaggctaaaatttcgaattttgtttCCCAA
TTTTTATCTCATGCAAAATAATCATCTCAAGGTCTAAAAGTGTAAAAATC
ACAATGCCAATAATTTTGttgaagttttgaaaacgaTGAACTTCTTTTAG
TTCCAAAAATGTCACTGAAACTTTTATGACATTTCAATAGACCTTTATTT
ATGTGGTGGATTGTCTGTAGAATAACAAATTACTACCAGCATAATTACAT
AAATTCTTGCCTTCAAACAGCACAAGCAGGatcaataattttctttgaaa
tgaacAGTAGTgctgtaaaagaaaaaatcaattatagatgaagttataat
ttaaGTTAAAATTTATGCTGTGCGTAGTAATTAGTTACCGTGTATACACT
TGCACtgatgttttttaataaaacgaaAAGCTTAAGCCGAAAAATAATtg
tcaaaatgttttttgaatcaaAGTTACCATGAAGGTAAGTTACTCGCCGA
CACAATCGCGGGTAAATGAAACAGTGTggtttgataataaaaaatcatgc
aagatcataaatttcaagatggcgggAATTCAGATGTTTCTTGATGGCTG
CTGGAACCTCAAATTTAATAATGATATTaaacataattatgcatgacatc
TTTTCATGATTAGGAGATATTTATACATTTCACTATCCGCaaattttctt
gtaaatttattttgattcaaCTTTGTATGttatgaccagccaggtcattc
atttgagggctatgcaagtttccttccaaggatgcaagttacccaacttc
acggtatTCAATAGTCTATTGTGAACTCCTAAACAACTCTTGGATTTTTG
tccttttaaaagtttcttctgTTTATTAACCATCAAACCaaaagttggtc
taatgtcgacatttCTAATTCTGACAGTGAGACCCATCTTTAGAGCTGGG
ATTAATAGGAAGATGGGAATTCACTTTCTAccatcaaactaatcaaactt
tttactgacTGATGTTTTGAGtgatttatttgaattttttttttaatttt
tgggttTTCCAGGTATACAACCCCTTATTACCCGGTACAATCTTGATATC
ACCATTGAGAAATGACACACCATCGTTAAGTACCCTGTACTAAAGTCGAT
TTCCCCCTCAAAACAGGTATACCACCCTTTAGTTCTTAGTGATGGTACTT
TCTGGTACACCTCCCCCtcctaaattttctaaaaaacacTGTATTAAAAG
ACATACCACAGCACTCTGTACCGCCCTTAATATCGCGGAAAGAATTCCTG
TCAAGTTAGGTCAAGTCAAATATCATTttgaaaccaattttttttattca
aaagaaataaagtttcaaataaaaaaaaaattataacaagcttgtcaaag
aaatcaaaagaactACAATAAACTAGTCtcgaaaaaaagagaaataagaA
TAACTAGGAAAAAAGTTAAAGATAGTTTTAAAACTGCTCATTCAAAGGTA
AAAATGTAACAACCATCCCAAGAAAATCCTAAGAACTTATAAAGTATACT
ATTGAATTAAAATATAGACTGCCTATAATAAGAAATGGTCCATTGCACCT
CTGCAGTACTCAGCAGTGAAAAAAGGTCCAGAGACTTTATAGGTTTTGAT
CCAAATAGtatcaatattttcataaaagaaTAATAGGGACTCTTAAACAG
TGATCATATTGTTTCAAAAGTAATCAATTCATTGTGGAATGTTCactgta
tttttttaatttgaagcttATTAAGGACCCTAAAATAATATGAAACTGAT
TTTAAAATGCCAAATAAAtaggtgaaaaaataaaagggtacatcttttgt
gattttgtaGGATTTTAAGTACCAGATACTAACTTGATGCCTCATATTTG
GTATTGACACCACTTAGTCCCTTgatacaaatttacaaaaatgttttttc
tcaaTTATGACCACCACTTAGTATCATGTACTAAAttgttttttacttac
cttatcAGACCACCACCCGGCACTGGTCCCCACaacttagtaccgacccc
cccccctgggtttCCCcctaaaaagtgaaattttggaaGATTTAGTTTCC
TGAAGGTAAAATGCCATGGAAAtcgaatgaaaaaaaattgaacctAATGA
TTGAAAAGCTGATGGTTGCTAAggcaaaatgactaaaatttgtgcaaatg
aaaaaaaaatcactttaaaaatgcctaaaaGTACGTTTTCAGCCCAAAAT
CCTTAGATATTAAAAATACATAGGTTCAGGTATATGGATTTAGTCCAGTC
CCAAATTTCACTAGATATCACTGCTAGCTTGTtgactaaaaaaacaaaaa
caattgtgTCAGGGCGATTTCAAGAGTGCGGCTTAGTGAATTTTAGGTCT
TTGATTTTGAAACCTTGCAATAACTTTGAAATAGATCACAGCTAACTTTG
GCATTTCTGAGTACCTTATAATGTGTATTTCCAGGAATATATATGGTTTA
ACCTTTCCAATGCAcaacatattttgaaaaatgtgaagaATTCCAATTAA
AAGCCTTTGTACCTTGAGAGTTAGACATTATTGATCTTGGTACCATtgaa
aaggtatttttataCTCATTCTAAAGGCATTCGATTTCAGGCTAAATTCT
GAGCACTTTTCCCACGTGCCGTTTTTTGATCTAGAAACACCAGTTATTGT
CAGTTACCTTAGTAACACTAAAACATCTTTTTCTGTGTGTGTCTTAAGAC
AAGTTGAGGGCACCCATAGGATCAATAAAAATTCTTAGGAAATCAAGGAA
TATACATTATATGATTACAGGTGAAAGAAATCGAGAAGAGAGATCAAGTA
TTGACAAGTGACAAACAAATTGACAGGTTGACAAAAGCAGGATCAAAATA
TCTTAACTTGAATCCTTACGAGGTGAGTAGTATTTTAGATCCAAAGCAGG
GGCTGTTCTTTCGAAGATTTATCTTGGCTAGCACTTTATAGCTGTCATTG
TTTActattttgatttgttgacCTCCCTAATTAGAAATATATATATCTTC
ATCGTTGTAGGTAATCCTAGACTTTTACCTTGTTTTTCACAATATTATAC
ATATTATTTTGGCATTCTATTTATGGATTTTGAGTACTTTTGGaagaaaa
ttaacaattttattgtttgaaaagtAATGCTACAGCTCAAAGCCTGCATT
GTAAGTAAGATTTATCAAATCATAAAATCAACAACAGCTGTAATAAACAA
CTTTTGGGGCAATTTCACAAAGAAACGCAAAGACCTGTatataaatttat
ataaatttgGTTGTTGACAATTATAATTTATACTCTCTGTCATAGGTTCT
TCAAATTTCACAAGATACAACAGAAGAGGATATGagaaagaaatataaaa
agGTACAAAATCTGTATTGTGAATGTTCTagttttatagatttttggGTT
TGAATACTTGAGAACTAAATCAACTCATCAAAAGTCATGGTAAGATGTTT
CACTTACTGCTTTTAAGATCatagaaatttttaaagagcaAAATGTCACG
TATATTTATTCCAAAACATTTTAACGGTCATTTCTTGTTGTTTGCTTATT
TCTAGCTTTCGATTTTAGTTCATCCAGACAAAAATCCTGATGAAAAAGAA
CGTGCTCAAAAAGCCTTTGATGGTATGGTGATAGAATATATTTCTTACAA
TACTATCATAAAATAAATCTAATCCAAATGATTAAATAACCTTTACTGTT
TAGATCCTTATCTCGTAAAGGTGAATTTTGATCAGACCAATggttgataa
atttattcgaagaAAGAATGTCCCTATAATATACTATATTCTAACTATTA
TTTTATGTATATTCATTGTTCCCAAAACCTTAGAACGAATTGTCTTATAT
TACACTGCTACCTTAATTAGAGCATTTTTTCTGTCTTTTAAAAACTCGAA
ACGGTTCCGAATCTTTAGCCGATGGGGCCCTTACTTACCTGCCATTGACT
GGCTGTTTTTTCTTTAAGACTGTTGATGTTTTCTAATGTTATTTTCAGCT
TTAAAGACTGCAAAGGAAACACTAAGTGACCCTGATCAagtcaaaaagat
caaattatTACTTGAGGAAGCAGCTGCTCTCTTAGAAATGAATGTAAGTG
TTATTGGATGTTGCTGAAGATTTCTTttctacgtcatatcttcctccGTT
TCGATCGTAAAACTCCTAACTCTTTGGGGGTTACTaatggccgcctatag
cagtgcctatagaccaagagtaaggcctaaaagcctggagctatCTCTTG
TGTAGACTAAAGATTTCGCGATAACAAAGACTTTACTCACCAGCTGATAA
ACGATTCTTAGGTTAAACATTTTTATGGAAATCTTTTAGGGCTTGTTTAT
TCTTATTATGTCCTGATTTTCAGGATtagaatgttaaaaaaaaataatct
taATTGTAATGCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00071282TCONS_00071282Clytia hemisphaericatranscript
TCONS_00071283TCONS_00071283Clytia hemisphaericatranscript
TCONS_00071284TCONS_00071284Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00071282-proteinTCONS_00071282-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1077571..1088583 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.97	18.21	29.79	29.55	18.47	15.68	20.74	21.09	22.81	18.42	25.62	18.05	13.81	13.73	13.67	15.36	12.71	21.15	10.62	10.25	20.6	17.17	24.92	24.88	14.35	15.85	24.18	26.32	17.69	14.15