XLOC_044320 (gene) - C. hemisphaerica

Overview
NameXLOC_044320
Unique NameXLOC_044320
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_60:1679715..1690412+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044320 ID=XLOC_044320|Name=XLOC_044320|organism=Clytia hemisphaerica|type=gene|length=10698bp|location=Sequence derived from alignment at scaffold_60:1679715..1690412+ (Clytia hemisphaerica)
GCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATACATAACAATAATAT
GGATTCTGCACATGGAGACGAGAGAAATTTAGCTCACGTCGCAAGTGGGA
GAAATGTGCAAAAAGTTGCTGACGATCAGCAAATCATCAAACTCAAGGAA
GAACACGGaagagaaattcaaaaattgaattatgaGTCAAAGATTGAATT
GATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAAACGT
TAGGTCATCGATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGCTGAA
ACGAAACAAGTTGCCGCTGACAAAGATCTTCAAAATAAACTgactgaaat
ggaaaaacaactTGCTATAAAGGACAAGGAGATATCAGACACGAAAAACC
AGATGGCAGTTAAGGAAAACGAATGTAAAATAAAACTAATGACAAAAGAC
CAGGAAATgctggaaaaagaaaatgagatAAAGGAAAAAGATGCGACAAT
CCAAAcacttcaaaatgaaattgaaaaattgaaaaggagCCACAACCCAA
CAGAATCTAAAATGGCTgtcacaaaagaaaaacatcctCATCTTTTCACG
AAAGAAGAAAAGTTCGCTTGGGGAGCTGATGTTTTCTTCGGATTCAGAGA
GATGAGATGGGAGGAAAGTGCTTACGAGTCTTACGAAGCTTGGTATATAG
GAATCAGTTCAGTTTTGACAAACCGAAGACAAGTTACTATCATCAGTGAT
GGaacaaaatatgttttcatgaAGAAACATGAAAACAAAACTGGTCAAAG
ACTATTTATTGGATTTAGGGAAAAAGTACGTTATAATTATACAGCGCAAG
ACTATGAAATAATCTTTGAAGGTCTGAACGAAGAAACGATGAAAAATGGA
CGATTCCTCCTTCTCCATCCCAAAGTACCTGAAAAGCGTTTGAATTTTGT
GCCATATCATGGTAATAAGGATTTGAATTGGTGGGATCTCGAAAAGGTTA
CTGAAGATTATTACTCTGGTAATGAAAAATCTGTAATCATTTTAGTATTT
TATAATTAATTTGATCATCATACATATTTTTAGGATACATTTGACTCTCA
AACTTGAacggggaattttgttcgaattaaagagagattcaaattataga
aaatatttcaagaggATTTCTCATTGACGGGGgctggaaacaagttcgaa
ttatagaaagattttaataacagaagttcgaataagcgaaagTTGTGctg
taactgttttcataaattcaaaaagtatcaaaatgcTAAATTCAATTTCG
GTTTCCTCTTCCTTTTCCTTCCACTTAAAATAATATGAAAGACGAAATAT
ATATTAAGTAAAATTGAGGaagtccaaaattttcgaagcctgcgaaaaaa
attttttaggcaaatttggccaaaaaaacgggtttttcggactttgtgca
aaattggatcattaattttttttgattttttccatgaaagaaggctacca
tcataggtaaaagatggctgaagcagaattttgcaaaaaaaatttgttgg
ctcaaaaaacgcatgtttatctataagaattactattaataagcatacat
caatgttcttagtcaaattactcaatttttttatgagatagatgtttttt
ttgctcatgaggatttcattttgaagaatatgtgtgtttagacaggaaat
ttgggttgcttggcgtgtttttataaaaaaactgaccaaattcgatattt
ttttataagcacattatcaattacttaggtattagcttttctcgaggtgg
atctttcattctttatgatttattgcacaaacatgcataactataaaccc
tcgaatgtgacggagcttgatttttggataaaaaaattttggggtaaatt
tcagctaaaaaacagctaaaaaacgggttttttggactttgtgaaatatt
ggatcattgtttttttctgatattttgcatgaaagtaggtaaaagatggc
tcaagcagattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ntcactattaataagcatacatcaatgttcttagccaaattactcaattt
tttgatgagatagatgtttgtttttgctcacaaagtcttgaatatgaaag
aatatatcaagagcatgaaattttggtttctaaacgttttgtttataaga
aacaaacgactaattttaatagatcgtcactatttgtgttctgaatgatt
gtttaatggtcacgtcacgtagatatcaattataaatgtgttaaatgcat
aaccaggtaggtccataaaagtatcacttgttaagcCTTAAAAGTAAttt
aggattttattttcactattttgtcaGTATTCTTGTGtaatttcctaaaa
aattttaaaaaccaaaaagcaacctaaaaatgttcgtaatataaagtaaa
attgataaaattgattCATAAATAGACACTATTATAtgcttcttaatttt
tttgtttatcaaaggaatatgttcttgtatagtttgttcttataaaaaag
gtgtattgcatAAACGAGTGAAACTCTGTTCccttcttaaccctattcaa
cctaggcttttagaggcggtttaaaaaaaagggggggaaaaaaaacgccc
cccccccccccctttttaacccctttcaacctaggcttttaggggcggtt
cagaactgggggggggggggggcttttcctgtaccactcCTTaatttttg
atctagtgggtctttttggatgaaatttggcacacaagatccttgtcaca
taaggtaacttttgacaaaaaatttttttgatgacgtcactaatCATGCc
gaaagtgagcaaaaactcaaaatttcctttgttcttaaaAATAGCTATGG
TATTCtaaaaaaagctttagaaaaaagttgcctgagtttaaaatgtttat
tttatcctagatattcaataaattacggtttaaatgatatatttgacatt
aaaaataaattcatattggaaaagtgtcactttttctgacagactttatg
tcagaaatgtcatcatgctcaaagtgtgaaaatttttaggtgtcaatttt
tttttattttaaagctaaataaaagttaggactttacagaaaatttcatg
gcaaaagctctattatttcaggagctattaccaataatttgacctacgaa
cagaaacagccccccccctaggccgaatagggttaaagtttTCATTATAT
TGTTAGCAGAAAGGTCTATTTGGGAATATATTTCACAAAAACTTCTTTCC
ATGAATAATTGTAACCATGTCAATAAGTTTTCATCAAAAATCTTACTTGA
AGTGCAGTTTTACGAAAACTAAACACTTGCCTTGTAACTGTAAAACAGAA
GTATCAAATTGAATGTAGATTTTGAgtttagttttattttttactccTGT
CTTATAGCCCCTGGTGAAACTTCTTTACACatagtggggatgaaaatttt
taattactgtaaGTAGAGGTAATTTTAAGAACTGCTTGAAATCGGGCAAT
ACAAAAATgcatttcttttctttcaatttcttttaacCTTTCGGTACCAT
TGATTTCATTGACTATTTAATAGTCTATTATTAACCAGAGTGATTAACAG
TTTGAAtaatagaaagatttgaataacagaagttcgaataagcgagagtt
tgctgtaactgttttcataaattcaaaaagtatcaaaatccTAAATTCAA
TTTCAGTTTCCTCTTCCTTTTCCTTCCACTTAAAATAATATGAAAGACGA
AATATATATTAAGTTAAATTTGAGGAAGTCCAAAATCTTCGAAACCTGCA
gatcttcttaactttttgagtttttagaaGCTTTACAATGtagtttaaaa
tttcattttcaccattttgtagtTTCCTGAAAATTTTGGGTTTTTTCGAG
ACCAAAAAGtaatcttaaaatgttccttatataaagtacatgttttttta
tcagcattgcacttataagcatatctaggctcagatatggggaaaaatta
agcatatggcaagcatttgcttgagcctacaaaaaatatttttttcctga
taTTGGCTTTTCTTGGCTGGAATTTCACTGATTTTCAGTATtaccctaaa
tttatgctttagatttaagcatcccctcaagcatttttcagcctttttaA
GCGTTCGACCTatgcatctctgagcctgttttcggatttttgtatgctta
taaaaaaaaacatgtaatgtgCTAGCAAGTCGCTGCAGAAAATTGAAATC
TGAAAATATTCATATTTCATATTTGCCTATGAATAGGATTAGGATTAGat
taggggtagaaaccaatcaagtagTCAGACTGCTGAAAAATAAGGTgaaa
tgatgaaatggatttacaccattcttataaaaacaagtaatactttaatg
gacctacctatttataaaacgaataattagaatttaatggaagtaatgta
taattttaaatttcgatttatatatctaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGC
GTGTAGACAAAAGTTCTTAATTAAAAACCCATCTAATGATGTTGAACTGC
tttgcaaataaaaaatgtaataCGAGATTGTCTGTGTTATCTTTATGTTA
TTTGTATGTATTTTATAAAGAGAGACTTTCTGATATTTCGTTGTTGTTGA
AGGGAAAAGCTTGTGAAAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTC
AACATAGATAACAATAATATGGATTCTGCACATGGAGACGAGAGAAATTT
AGCTAACAGTGCAAGTGGGAGAAATGTGCACAAAAGTGCTGACGATGAAG
AAATCATCCAACTCAAAGAAGAACATCaaagagaaattcaaaaattgaat
tatgaGTCAAAGATTGAATTGATGGAAGCTCAAATGAAAAATGTCAGTTT
GGAAAAAGACAATCAAACGTTAGGTCATCAATTGGAGATGTTGAAGTTGA
AGAATTCACATGAAGCTGAAACGAAACAAGTTGCCGCTGACAAAGATCTT
CAAAATAAACTgactgaaatggaaaaacaactTGCTATAAAGGACAAGGA
GATATTAGACACGAAAAACCAGATGGCACTCAAAGAAAACCAATGGGAAA
ACGAATGTAAAATGAAACTAATGAAAAACGACAAGGAAATgctggaaaaa
gaaaatgatttcaaaCTTCAAATCAAAGATTTAGAAAGCTCCAAAAAGAA
CAACAACCAACCGGAATCTAAAATGGCAgtcataaaagaaaaatatcctC
ATGTTTTCacgaaagaagaaaagtttgCTTGGGGAGCTGATGTTTTCTTC
GGATTCAGAGAGATGAGATGGGAGGAAAGTGCTTACGAGTCTTACGAAGC
TTGGTACATAGGAATCAGTTCACTTTTGACAAACAAGAGACAAGTTACTA
TCATCAGTGATGGaataaaatatgttttcatgAAGAAACATGCAAACAAA
ACTTGTCAACAACTACTTATCGGATTTAGGGAAAAAGTAAGTTATAATTA
TACAGAGCCAGACCATCAAATAATCTTTGAAGGTCTGAGCGAAGAAACTA
TGAAAAATGGACGATTCCTCCTTCTCCATCCCAAAGTACCTGAAAAGCGT
TTGAAGTTTGTGCCATATCAGTATGATAAGGATTGGTGGAATCTTGAGAA
TGTTACTGAAGATTATTACTCTGGTAATGAACAATCTGTAATCATTTTag
tattttgaaattaatttgatCATCATACATATTTTTAGGATACAGTTGAC
TCTCAAACTCGAACGGGAAATtctatttgttcgaattacagagaatattc
aaattatagaaaatattttaagagggtttctcattgacggggactggaaa
caagttcgaattatagaaagatttcaaataacagaagttcgaataagcga
gagtttactgtaactgttttcataaattcaaaaagtatcaaaatccTAAA
TTCAATTTCGGTTTCCTCTTTCTTTTCCTTCCACTTAAAATAATATGAAA
GACGAAATATAAATTAAGTTAAATTGAGAACATCCACAATCTTCGATGTC
TGTGAATGTTCttacctttttgagtttttaagctTTACAATATAgtttaa
aactttattttcaccattttgtgagtattcgtGTGTAATTTCCTTAAGAA
TTTTGATCTTTTAGAGACCAAAAAgcaaccttaaaatgttcttaatataa
AGTAATGTGCTATAAAGTCGCTGCAGAAAATTGAAATCTGAAAATATTCA
TAAATAGACACTATTatatactttttaattttttgcctGATCAAAGCAat
atgttcttgtatagtttgttcttataaaaaaagtgtattgcgTAAACGAG
TGAAATTCATTATATTGTTAGCAGACAGGTCTATTTGGGAATATATTTCA
CAAAAACCTCTTTCCATGAATAATTGTTACTATGCCAATAAGTTTTCatc
aaaaatctaatttgaaGTGCAGTTTTACGAAAACTTGTAACTGCAGAAAA
CAGAAGTATCAGATTGAATGTAGATTTGGAgtttagttttattttttact
ccTGTCTTATAGCCCCTGGTGAAACTTCTTTACACATAGTgtggatgaaa
atttttaattactgtaaaTAGAGGTAATTAAGAACTGTTTGAAATCGGGC
AATACAAAAATgcatttcttttctttcaatttcttttaacCTTTCGGTAC
CATTGATTTCATTGACTATTTAATAGTCTATTATTAACCAGAGTGATTAA
CAGTTTGAAtaatagaaagatttgaataacagaagttcgaataagcgaga
gtttgctgtaactgttttcataaattcaaaaagtatcaaaatccTAAATT
CAATTTCAGTTTCCTCTTCCTTTTCCTTCCACTTTAAATAATATGAAAGA
CGAAATATATattactagccggtacccgcgCCGGCGTCGCAcaccggtta
agctgtagctgaacgcactcaAAGTCCTTttgatgttgaagctggcttaa
aaaatgatcaaactaataaaaagatgtcttcaaagtttgactctaaccct
cccccggagatctttttctcgcttcgctcgcattaaatacgccgtccagt
tttcgacaatttgagaaaatgtcatggtaaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgttggattttta
acaactctattgtgagataataactttgttgatcaaaataagaaaaaggt
tgccgtaacaagcacaaaatcctatatttcTAAGGGTCCCTTCTCATAAA
ATaatcgataaatttcaaaaagaattctatattacgaataggtaaccttt
taattaatgatccatcagaatttgaaacccccctcccttttagacgtaaa
gatttataatgaagaaattttcaaggaaaatgtgctgaaactctcaaaat
tagcactgtgttcgcccaaaaatacatcgatatgaaatcatagaactTTT
GTAACTTgactttgagaaaattattttcgtaTCGTgtttgaacaagaact
ttttgcataataagtttatttcaatcaggataacattctcacttctgttc
ttataaatttacatttcggatttttttgcttccaatgaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCaacaaagaaaagccgctttgaatagatttata
aaagatttcaacgatcatttaggtcattaccgagacgttttctctccatc
tatatctttattacctctatgatcagatttaaaaagataaataagtcaat
tctaaattgctttttttaaacccttgtcataacttttcgaaattaaacat
gtaaaatgacgaAGTTTTTAATAGTATCCAccacttgaaaatttttatat
gaagaaaaagatggactaatttcttctcttgctttttatcgccctttgcT
GAAataaaggctgaataaagtctaaaccatgCTCTATTCGATCTgtgaat
caaaacaaacttatcgagaacaaaacattgcttgcgaaatcgaaagtatg
cgcgaatccaatagaacaaatttgtggagcaatagactaaaagtcataat
tttaaaacacaaacaaagcgaaaacgaaagtggtgacacacagacacaca
aagcaccgctattaatatatagaagtTAAATTTGAGGTCCAAAATCTTCG
AAACCTGCAgatcttcttaactttttgagtttttagaaGCTTTACAATGt
agtttaaaatttcattttcaccattttgttagTATACTTGTgtaatttcc
tgaaaattttggGTTTTTTCGAGACCAAAAAgtaaccttaaaatgttcct
tatataaagtacatgtttttttttataagcattgcacttataagcatatc
taggctcagatatggggaaaaattaagcatatggcaagcatttgcttgag
cctacaaaaaatatttttttcctgattttggcttttcttGGCTGGAATTT
CACTGATTTTCAGTATtaccctaaatttatgctttagatttaagcatccc
ctcaagcatttttcagcctttttaAGCGTTCGACCTatgcatctctgagc
ctgttttcggatttttgtatgcttataaaaaaaaaacatgtaatgtgCTA
GCAAGTCGCTGCAGAAAATTGaaatctgaaaatattatatttcatATTTG
CCTATGAATAGGATTAGGATTGGattaggggtagaaaccaatcaagtagT
CAGACTGCTGAAAAATAAGGTgaaatgatgaaatggatttacaccattct
tataaaaaaaaagcgtgtagacaAAAGTTCTTAATTAAAAACCCATCTAA
TGATGTTGAACTGCtttgcaaataaaaaatgtaataCGAGATTGTCTGTG
TTATCTTTATGTTATTTGTATGTATTTTATAAAGAGAGACTTTCTGATAT
TTCGTTGTTGTTGAAGGGAAAAGCTTGTGAAAGTGCGTTTGGTGAATTGC
AACTGAAAGTTCTCAACATAGATATTAATATGGATTCTGCACATGGAGAC
GAGAGAAATTTAGCTCACAGTGCAAGTGGGAGAAATGTGCACAAAGTTGC
TGACGATCAGCAAATCATCAAACTCAGGGAAGAACATGGAAGAGAAATCC
AAAAATTGAACTATGAGTCAAAGATTGAATTGATGGAAGCTCAAATGAAA
AATGTCAGTTTGGAAAAAGACAATCAAACGTTAGGTCATCGATTGGAGAT
GTTGAAGTTGAAGAATTCACATGAAGCTGAAACGAAACAAGTTGCCGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00071314TCONS_00071314Clytia hemisphaericatranscript
TCONS_00071315TCONS_00071315Clytia hemisphaericatranscript
TCONS_00071318TCONS_00071318Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00071318-proteinTCONS_00071318-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1679715..1690412 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.65	0.26	0.65	0.15	0.53	0.14	1.18	1.37	3.71	4.34	1.32	2.21	9.34	8.29	8.69	9.2	3.14	4.18	6.56	7.83	3.07	4.76	4.57	3.24	8.6	5.83	6.36	3.98	0.65	1.17