XLOC_044940 (gene) - C. hemisphaerica

Overview
NameXLOC_044940
Unique NameXLOC_044940
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_77:417940..421666+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044940 ID=XLOC_044940|Name=XLOC_044940|organism=Clytia hemisphaerica|type=gene|length=3727bp|location=Sequence derived from alignment at scaffold_77:417940..421666+ (Clytia hemisphaerica)
CGTTTTATTTGGTTACTAAAGATGGCATCACGTTTTCaacaaaatatatt
tgatttaaaaCCCATGTCGATTGATCCAACGAATTGCAGTACAAAGCAAT
CACTTTACCAGCAAATCCAAAAAAGTTCACAAAAAGTATTGAacgaacaa
aagaaaaagttcaatTTGGGCAATGGACAATTTTTCAACGACCCAATCAA
AGTTGCTGATCAGCTTCTCGAACGTGAGTACGCTGATTCAGCACTTTTCG
ACTCTACCCTCCACGAAGCCATTTTTATTCCACCTCTGTTCGAATCCGAC
CAATATGCGAAAACGGATTCATCGGTGCACATGCTCGATTTCGAAGACGG
CAAAAAATCTTCAATACAGAAATCATTGGATAATTTGAAGTTAAATAACC
CTAACCATTGGTTTACCAAGGAGCTGCAATCTTTCCATGATCTCCAACAA
TCCAATTCTAGCGACGTAATCAACGCCACGGAATTCACAAATTGGATTCG
CAATATCAAACTCAAATATTTACTGATCGAAGAGTTAGGAACGGACCAAG
TGAACCTTCCCGCATCAACATCTGACAACCAAACCTTCAAACAAGCTTGC
ATCCAAAAGCTGACAACGATGCAAGGATCTCAACTCAATGACGCTCTAGA
GGTACGTTTCTCATATGTGTATATATTCATTCTTTAAATGATTAACGTCT
CATTTTCGTAGTCTGTACCGTACAACAACTGTTACTTACtttaaatttcg
cgagcgaaAATATcgtgaaattttctttccgagtcagagttttgaaaaat
ttcgtgtggATTTCATTTCGCGAATAATCCTGAAATCAGCTGAAAAAAGG
TGAAATTCGTATCCCGGTAAGTAGTACTATCCGGGGGGGGAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGGGGGGGAGAGGTAAAAAGTGGTCCTACTTATTAACTGCGATTCAG
AGGCACATCTCAAAGGTAAGAACCAAAGAAAAGTGGCACTGCCTTAATAC
AATTATATAACTACTCGATTTTATAACGCCAATTGGCTACCCTCGCGTTA
ATTATAACCGTTTAATACAATTTGAGCCGGGGTAGTTTTCAAAAGCCCTG
TCTTTCACGTTAAATAAATGTCGCACTCATTTTTCCTGTGTTAAGTACTA
TTATGCTGTTCAGGGTTTCGGTAGCGTGGGAAGATCTATCCCACGACACA
GAAACCCTGAAAGCAGACGGGTAATCTATACCAATCTAATTACCAGTAGT
AggtttgttaaaaaataaaaaaataaaaatttgaagtcagtgcTGCTTAA
GGAAGAGCTGAGAGCAGATTGGGCTGCTTGACAATGAATAGAGAGGGATT
GCTTGAGCATAGAAGGTGTAATCAGAAcaatgttttgaagaaaagaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGGGATTCAAAGACTGTTATGTGC
CTGAGTGAAGCCTCCAGAGGAGAGTGAGAAgattgagaaaaagaaaaaga
gatgtTGAAAGAAATAGGTGTTTTGAAAGCAGTGGGGAAAATGAGATGGT
GGGTAAAAGAACATAGAAATATTCTTACATTGAGATGAAGTTTGCGTGAT
CTTGACAGTAGTCTTGAGTGCAGGATGCAAAGagcgaaaaaagatttttt
ttttccttttttttgaaatttggcgcTGTTGTAAACAACTTGATGTAACC
ATGGAGACTACATTTCGATTGGTTCCTGTTTAGAGATTCTAACCAATCGG
GTGAGAGGGGCGTGTGTGGCGGAAATGTGATGGGCGGGTCAAACGTGTGT
GACGGAGGTAGATACTAGCCAATGTTGAAAATAGTACCAGTTTAGACAGA
GGCAAATTAGAAAATGAAGTAGGAAGAGAGGTCTTGAGGTGAAAGGAGTG
GTGAGAGATAGGGGAAGAAGGAGGAAGatagagttttttttttaatttaa
aattttgagataGAAAAATAGCATCCTCTGGGGGTCGAACACGGGTCATT
GCGGCCCGAGGTGGCAGTGCTAGCAAAAGGCTATTGAAGCTGAACTGATC
ttaagaattgaaaaaaaacattgagaGAGTAGTTTCTATTACGGAGTATG
AAGGAGATAAAGGTGACAGGGCTATGACGGTGTAATCAGAAAGCAATTAT
CTCTCCAATGTGAAAAAAGAGAGGAAGTGGTGCCAGTCNGGTGTAATCAG
AAAGCAATTATCTCTCCAATGTGAAAAAAGAAAGGAAGTGGTGCCAGTCA
GTGAGCACGTTGGAAAAACCAATATGGCGAATCTTGagttagaaattgaa
aaaataagaaattgggAAAAAGAATGGGAAGAGTAAGTATACGAAAAAGG
AGATCCACAAGGAAGTTGACAAAACTGATCTGGAAGCATTGTAGCTTGTA
GCTTCTTTGGAATTATAGTCCAATTTGAGCTGGGGTAATTTCAAAAGCCC
TGTCTTTCACGTTAAATAAATGTCGCACTCATTTTTCCTGCGTTAAGTAC
TTGATAAGTTATAAAAATGTAATGATGTATTTAGGCGCCAACTTCTTATC
CGTAGCCCACATATCCGCAATATGAAATAGTTATCGAGGTTTCACTTTGC
TTATTCTCTTATGATTTTTCAGGTTAACAACTGTAAGAAAGGAATCGAAA
AGCTGGTCAAACAAAATCCACCAAAGGATCCCATCATGAGATGGTATTTC
GGATTCCAACCTTCTGAAATCGGTGAAAAAGCAGAGCATTCTTTTTTTGA
ACAACTTTATTCCCTCAAAGATGACGAAGTGCTCCAAGACACTGTTATTC
TAAATTCTCTTGACTTTCGTACTAATGTGAACAACCGCATGCAACAAGAA
TTTGACGTCCTTTTGTTCTCTTGGTCCAGAAAATTGATCATCGGTATCGA
AATCAAACGAACACTGACCTCGACAAGAGCGTTTGAACAACTCGACAGAT
ATCACGAGTTGATTGAAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGG
ACCTTTTATCCAGCTCTTTGCGTTGATTACGATACTGAACTTTGTGGAAC
TCAACATTACATCAATCTGGACACTGATTTTAAAGGCTGGCTCGCAAACA
TCTTCACAAAATACCCTATTGTACCAACCTTCATCCCCTACGTTCCCCCA
GTCAATCAACTTAAGGATGTTTTACGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00072376TCONS_00072376Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00072376-proteinTCONS_00072376-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:417940..421666 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.59	0.67	0.5	0.3	1.4	1.12	2.38	2.78	2.5	2.49	1.54	0.82	2.56	3.48	2.45	3.1	2.02	3.38	2.3	2.35	2.22	2.08	0.58	1.89	2.63	2.01	7.26	5.72	1.52	1.27