XLOC_045585 (gene) - C. hemisphaerica

Overview
NameXLOC_045585
Unique NameXLOC_045585
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_92:176109..181990+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045585 ID=XLOC_045585|Name=XLOC_045585|organism=Clytia hemisphaerica|type=gene|length=5882bp|location=Sequence derived from alignment at scaffold_92:176109..181990+ (Clytia hemisphaerica)
TGTTTCAATACAGCACAGATATTTCTTCCTACAATGAACATTGGAGGTAG
GCCATGATCATTGCATGAAATCAACGGTAGCCGAAACACGTCAACCACCA
ATAAGGGAAGGTATGAGATGTGTTTTATATAATACCTTATAAATACAGTT
CTTTTATAAACTATGTTAATTGTTTTCTCTTATCAATAAGGGtattaaaa
ttgaaatcaaagaaaatctttgattaaAATTTTGTATCTTTCTACAAAGT
AATTCGTCATTTTATCAGCACGTAGCTTTTATCATCAATCTGCAACGTTT
CATTTGGCCGAAGAAAAAGTATCGTGTATGTGGAGTTTGTGAGCTTTTTG
AGATTATCTCAGCGTTTAAGTTTTTTGGGCCAAGGTATAAGTTTCAAGTA
GAGCAGAAAACCGTTCAACCAAAATTTGAGACATTAGATGATTGACTATA
ACTTTGTGATGTTATTCGAGATCTTTATATctaaggagaaaaaaacaatg
tgGTAGTAATTCGCTTTTGACGTTTTATCAGGGCTGCCACGTCTGTCAGA
AATGTCTGGAATTAGGTAAAAGTCTGCAAATGTTTGGAAAGTCCGGAAAA
AGTCTAAAATTGGTATACTTGTTTAGAAAAGTCTGGAATTAACGTACATA
GTTAACTTTCTGGAGATAGGAAACTTTCCTTCTGTNTAAAATTGGTATAC
TTGTTTAGAAAAGTCTGGAATTAATGTACATAGTTAACTTTCTGGAGATA
GGAAACTTTCATTCTGTCAGcatttgaaatttccaaaaactgGCCTTTCA
AATCACCattaaagaaaaactaaaaacctTCCGAATTGATAAAATGTTTG
GGTAATATTGGGTATTTTACCAAAATATCTGaaacatttttgacattttc
atatAAAATATCTTGAAATATGTGGCTTTTGAGACTAAAAGTCTGGAATT
TCAACTAGGCAAACCTGTAGCAACCTGTTAAAACTATTTGAcatcaaaaa
agtaaaacatatAGATAAAAATTGAGGGAAAAATATTGAGTACTTATTTT
GGAATCCTTATAATTTAGAGACTGAGTGGACGGtgtgtttaaaaatcttt
accggacgtgtccgagaataatttatatattgatgacgtcacaagcaaaa
gtgAAGAATTGATTTTGCAGAATTATAAAGTTTTATATACCATTTAATGC
ATTTTTAGATCACATCagtccaaaaaaataaaaatttgaatatgaaaaat
gacgtcatttttgaagaattttaaaagaatcacaATCTTAATTTTATTGA
GTTAGGTTTAGAAATCGAATATATCCGTCTAAATGTGTTCTATATAGTCG
AGtcgagctttcgaatggtataaaTCGTTTTTCGTTTTGACGACGTTcaa
atttgacattttcaggTTACCTCTAACCCCCTAAAGATTTTAGTCATAGC
TCTTGaaatctagaagagctatggacCTTTATAACTTTTCATATAATCTT
TACTCGTTGAGACTGATGCGATTTGGAATCTACTTGCCATGCgctgaaat
caaattttaagtggtggtgacgtcatcagctgacAAAACATTACCGGACG
TGTCAGTTGAATATTTTGTCGGACGCCGACTAAAATATTTAAGATCAGTT
GATATACAGGAATGCAAGAAAAACCAACTCAGTATTTGTTTCAAACTCAT
CCAAATTTTAGAAATCATCAGCTGCCTGTCTGAAAAACGAGCCACTTTTT
ATAACCATTTGTGAAATAATTTGTGAGCCAGAGGCGTGTACAAATATCAA
AAGGGTTAAAGGCTTGTTTTAATGATATACATAGAAAATTCTGGTCTTAA
AAGGTGAATTTGTTATCAAATCCGAAGAAGAAAATATATTGAAGATATTC
TTCTAACCTTCAAAGGCCAATCTACCTTATTGAACAATAAACGAGATAAG
TCAAGAGCTAATATCGCCTAcaaaaaaatgaattgaatttCGTGCTTAGT
AGTAAACTTTATAGATTACTAAACTATTTTTCCCTCTCTAACTCTTCATA
ACAAGAGCACCTTATTGATCTTTCAAGAAAGGGGAAGATTTTTTCTCCAA
TCAAATCTTGTTTCAAGACCCAAGAATCAGAAAAATAATCTTCTAATCTT
TCTTCGAGTttaacttttcaaaatatttttatcgaAAAGTTTGTTTTATC
TCCTCATGTGAGGAAAGAGTTTTGGACTACCCTCCAGTTAGATGACTTTA
GGGCCCCATTTTGACGTTGTTAAACTATATGACGCTTTATAGCAATGTTT
TTCATGGAGATCATAACTTTCGTATAACATTTTTGTTGATTATTTCCCTT
CAGAGCATCAAGAATATGCAAGTGACGCGGATCAAAGTTCGCGAATTGTG
TCTTCTGTTGTGCCTTCTTTCGCTATGTCTAATTATGGTGGTGCGTTATC
GAGCTCCTGAGGATAAAAAACAGATCCGAAAGAAGAGAGCGCAACATGTT
ATTCCACAAGATAAACCTGTTCCTCCTCGTTATTCAGGAAAGTTGAACTC
GCCGGGCGATCTATTGATAGACTTAGAGAggaaaatacttttgaaaaatg
aagtttcGAATGCAATTTCGGACAGGGAGGCTGAGAACGAGAAACGGATG
TCACAACTAGAGAGTAAATTATTTCAACGTTTGAATATCATTGAAAGCAA
AGTAAACCGAAACGAAGACCTACTTCTTGAAATTGATCGATTGTTGAaaa
cgaaatcgaaagtaaacgAACCAAAACCACCGGCAACAAAGATCAAACTC
CAAACAAGAGATTTTTCTATCATGTACGAAATTCATAAAAAGGTTTGGAA
CAAATTGACTGAAAGTGAAATCAAAGAATTTTACAACCGTGAAAGAATAT
CACATTTGAAATATAACAAGCGCATTTTAGATATTGAAAGGGATCGACAT
TTATTGATGGAGCTATTTCCAGGACCCGACGAGTCGCGAGACCGAGTCAC
CGATCAACTTATGGTCAAAATTAAAGTTAACACAACTAAAACCATTTTCG
TCAGTGGTTCTAATGTGAATAATCAAAAGAAGTTCCAAGCAGACCAGTGC
AACGTTGATAAATGTTTTATAACAAGTAATCCCAAATATGCTTCGGTCGC
AGACGCTCTTTATGTTGAACATAAAATGCCATATCGATTTTTAAGAGAAA
AGAATATTAATAAGAATCGGGTCAATATGGTTTTCCAGTTAGAATCTTCA
AGAAATTACCCATCTATATCTATCTTACCCGATGGATTGAACTGGACAGC
TTCTTATCGCGTCGATAGCGTTCTGTACGCTCCTTATGAACGTTTCACGT
CATTTCTAAATGTGACCGAGCTACCCACCAAACCTAAAGAGAATTATGCC
AAAGgtaaaacaaagatggcggcttGGTATGTTTCGAACTGTGGAGCAGC
AAGTGGTCGTAAAAATTACGTCAAAGAACTACAGAAATATATTTCAGTGG
ATATTTACGGACGCTGTGGTAAACCGTGtccgaaaaataacaaaaaatgc
TATGACCAATTGAACAATGATTACAAATTTTATTTGGCCTTCGAAAATTC
AAATTGTAAAGACTATTTCACTGAGAAAGTCTATTGGAACGGACTTTTGT
AAGTTCAAATTTTTCGTTTTCTGTGTCGTGATACTTTAGGTGTCTGGTAA
ACAAGGTCATTGTGGTTGAGGGCCAGGCCTTTCTTTCttacaaataaaaa
attaatgcCGGTACTGCATTGTacattaagggaagaaatttcggcgggaa
tttaatttggcggatggtggaAAAAAGTAAATTTGGCGAGAAATTATTGT
CGGATTTTGGCCAAATCCACCAAATCCGCCAAGTTTTCTTTTCGCCGAAT
TACCTCTCTGGTAAAGTCCttaattaaattttaattatcttaaattttaa
attttaattaatgaagggagtggtcagaaagtatctactagggggggtTT
GGGCTGGAGGATTTCAGTTGGGgttcgaaattatttttgagggtttaggg
ggggggttccagaaaaaaatcctcAATGGGAAAGGGGGGTGCGAAATATT
TTTGGGCAACTTAGGAGGTCAAATTCCATGACATTATTCGTATTTCGTAT
TATCGTTAATTCTGTCTTCATGAAATATCATTGTGATAGCCTCACCATTT
CGCGATTTCTATAATATAAGACTAAGAAAGGTAGTTTGTTAAGGGATCCC
CCCCTCATACAATTTCACATGTCAGCATAGTCTAGTCGTTTTAAAAAGAG
CTGAAAATACAGTGCTTTTAGCGAACAAAGTGGTcgaaaattgcaatttt
tctcCTGTCgtcgcaaaccatggttgcgcctcccgggggggggggcagcc
aggcaaattgaccgacgggtatgtgcggcggctaagggtctatttttcaa
gatagcagaaatgcactgtaagggtagactTTTTGTTatatgcactgtaa
gggtggaaattttagtaaatcaaggaaaaattaagattttttgcccaaaa
agtctgatttttttgctctaaaagggttgaaaatttgaagaaaatgcact
gtaagggtatgaatttgaCGGAATTTCGCCgattttttgctgcactgtaa
gggtgcgattttaaaagccaattttttcgccgcacataccgtcagttggc
aaacccagtgccccccccccgggttgcGCCTTCTTAATCTTTGATATTAC
TCCTGTTATATTAAGGTATTGTATATGCAAAGAAATAATCTTTACTTTTA
AATTCCATATGGGCAAAATTAAtctcgtcggcgcaaaccatggttgcgcc
tcttTCGTCACTAAATTNcagttgaaaacaaaaataaacgaGGCAAAGTG
GGCCTACTAATTGCGAGGGTGTCGAATACCACGTGATCAATAAACCATGT
TTGCGCCCCCTTCGTCACTAAATTCTTTGCCCCTGCACGTTTGAAATCAA
GCCACTTGCTTTCTTCTTTATATTAATGTAGTCCTCCCCACATGAGTGCA
CAACATTTGATACTGAGGCTTATAGTTATAGGATCACTCATAATCTGGAA
ATTTACTGTAGTTAAACCCGATTTATATGTCTGACAAGTCGCCCTTATCC
AATTTTAGCAAGGAGGGAGGGGTTACGAAggtttttttaacccttttgaa
ggggggggttcgaaaaacAGGTTAAGGGTGCGGgtgtgaattttttttgg
attttttgaaatatcctcaactcccccctagtagatactttctgaccact
ccctaactCATTCTTTCTTAGCTGTTTCATACAGGGTTGTATTGTTTAAA
TCTATTAAAATCTGTTACTTTTCTTGTAATTTGGTGATGTCAATGAGTGT
TCCAGATGATAGCTCTGAAATAAATCCCTCtgataatttcttttctttca
taGTTATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTGACGAATACA
AACGCATTGTCCCTCCACACAGTTACATTCACACCGACCAATTCGCATCG
CCAAAAGAACTGGCGGAATATCTCATCTTTTTAGATCAACATGATGACTT
ATATAATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACACCA
AATTCATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCCCATTTCCCA
ATGTGGTATAGCGACGCAAACAATTGGTGGAGGAGTAAAGACAATTGTGT
TGATCCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAACA
AACCTCTCCCGAAACAACATTCAAACTTTGTGAAATACGGGTACAAGAGA
TACGGCTGATATTTTTACCTCCAATTGTATTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00073444TCONS_00073444Clytia hemisphaericatranscript
TCONS_00073445TCONS_00073445Clytia hemisphaericatranscript
TCONS_00073446TCONS_00073446Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00073445-proteinTCONS_00073445-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:176109..181990 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.32	0.38	0.11	0.31	0.53	0.37	1.18	2.15	1	1.94	2.25	1.47	0.24	0.41	0.12	0.11	12.73	10.95	0.29	0.24	15.38	17.35	7.85	10.85	13.66	11.95	5.17	4.9	0.99	1.01